FvH4_3g40960

Cytochrome b-c1 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004343
Physical Location & Seq
Reverse (-)
34461625 .. 34463590
1966 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40960.t1

Sequence Viewer

Length: 339 bp
ATGAAAGCCAAACGAGATCTCTATTGTAAAAGTTGTGCACGAGTGTTTCTTACTTCTTCTCTTCCATTTGGGGGACTCAACATCTCAGAGAGCCGAAGAGAATTTGAGAAGAAGAAGAAGATGGGGAAGGTACCTGTGAGGATGAAGGCGGTGGTCTACGGGCTGTCTCCGTTTCAGCAGAAGGTGATGCCGGGTCTCTGGAAAGATCTGCCGTCCAAGATCCACCACAAGATCTCGGAGAACTGGCACAGCGCTATCTTCGCCGTCGGACCCGTCGTCGGAACCTATGCGTATGTCCAGAACTACAAGGAAAAGGAGAAATTGGAGCATAGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyt_b-c1_8

Protein Analysis

113

Amino Acids

12.96

Weight (kDa)

9.97

Isoelectric Point (pI)

60.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyt_b-c1_8 PF10890 41 - 112 1.4e-36 Cytochrome b-c1 complex subunit 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 130
AccB1I GGYRCC 1 cut(s) 130
AccI GTMKAC 1 cut(s) 156
AciI CCGC 1 cut(s) 149
AclWI GGATC 1 cut(s) 214
AcsI RAATTY 1 cut(s) 101
AfaI GTAC 1 cut(s) 132
AfeI AGCGCT 1 cut(s) 253
AfiI CCNNNNNNNGG 2 cut(s) 71, 278
AhdI GACNNNNNGTC 1 cut(s) 275
AloI GAACNNNNNNTCC 1 cut(s) 317
Alw21I GWGCWC 1 cut(s) 40
Alw26I GTCTC 2 cut(s) 171, 200
Alw44I GTGCAC 1 cut(s) 36
AlwI GGATC 1 cut(s) 214
Aor51HI AGCGCT 1 cut(s) 253
ApaLI GTGCAC 1 cut(s) 36
ApoI RAATTY 1 cut(s) 101
Asp718I GGTACC 1 cut(s) 130
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 269
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 196
AvaII GGWCC 1 cut(s) 269
BaeGI GKGCMC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 130
BauI CACGAG 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 40
BccI CCATC 1 cut(s) 115
BceAI ACGGC 2 cut(s) 196, 248
BcnI CCSGG 1 cut(s) 192
BcoDI GTCTC 2 cut(s) 171, 200
BfoI RGCGCY 1 cut(s) 255
BglII AGATCT 3 cut(s) 16, 205, 231
Bme1390I CCNGG 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 269
BmeRI GACNNNNNGTC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 3 cut(s) 132, 271, 283
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 1 cut(s) 177
BpuMI CCSGG 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 200
BsaXI ACNNNNNCTCC 1 cut(s) 317
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 278
Bse1I ACTGG 1 cut(s) 248
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 2 cut(s) 71, 278
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 40
BshNI GGYRCC 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 40
BsiSI CCGG 1 cut(s) 191
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 2 cut(s) 71, 278
BsmAI GTCTC 2 cut(s) 171, 200
BsmFI GGGAC 1 cut(s) 87
Bso31I GGTCTC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 4 cut(s) 16, 205, 219, 231
BspACI CCGC 1 cut(s) 149
BspCNI CTCAG 1 cut(s) 98
BspLI GGNNCC 3 cut(s) 132, 271, 283
BspPI GGATC 1 cut(s) 214
BspT107I GGYRCC 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 200
BsrI ACTGG 1 cut(s) 248
BssMI GATC 4 cut(s) 16, 205, 219, 231
BssSI CACGAG 1 cut(s) 39
Bst2BI CACGAG 1 cut(s) 39
Bst6I CTCTTC 2 cut(s) 66, 91
BstDEI CTNAG 1 cut(s) 85
BstF5I GGATG 1 cut(s) 147
BstH2I RGCGCY 1 cut(s) 255
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 4 cut(s) 19, 208, 222, 234
BstMAI GTCTC 2 cut(s) 171, 200
BstMBI GATC 4 cut(s) 16, 205, 219, 231
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 40
BstX2I RGATCY 4 cut(s) 16, 205, 219, 231
BstYI RGATCY 4 cut(s) 16, 205, 219, 231
BtsCI GGATG 1 cut(s) 147
CfoI GCGC 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 131
CviJI RGCY 3 cut(s) 8, 93, 163
CviKI_1 RGCY 3 cut(s) 8, 93, 163
CviQI GTAC 1 cut(s) 131
DdeI CTNAG 1 cut(s) 85
DpnI GATC 4 cut(s) 18, 207, 221, 233
DpnII GATC 4 cut(s) 16, 205, 219, 231
DriI GACNNNNNGTC 1 cut(s) 275
Eam1104I CTCTTC 2 cut(s) 66, 91
Eam1105I GACNNNNNGTC 1 cut(s) 275
EarI CTCTTC 2 cut(s) 66, 91
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 269
Eco47III AGCGCT 1 cut(s) 253
FaiI YATR 3 cut(s) 288, 294, 330
FaqI GGGAC 1 cut(s) 87
FblI GTMKAC 1 cut(s) 156
FokI GGATG 1 cut(s) 154
GlaI GCGC 1 cut(s) 253
HaeII RGCGCY 1 cut(s) 255
HapII CCGG 1 cut(s) 191
HhaI GCGC 1 cut(s) 254
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HinfI GANTC 1 cut(s) 75
HpaII CCGG 1 cut(s) 191
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 2 cut(s) 38, 157
Hpy188I TCNGA 5 cut(s) 88, 238, 269, 281, 338
Hpy188III TCNNGA 2 cut(s) 199, 298
Hpy8I GTNNAC 2 cut(s) 38, 157
Hpy99I CGWCG 3 cut(s) 269, 278, 281
HpyAV CCTTC 3 cut(s) 121, 139, 175
HpyCH4V TGCA 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 1 cut(s) 85
HspAI GCGC 1 cut(s) 252
KpnI GGTACC 1 cut(s) 134
Kzo9I GATC 4 cut(s) 16, 205, 219, 231
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 5 cut(s) 147, 184, 204, 229, 311
LweI GCATC 1 cut(s) 177
MalI GATC 4 cut(s) 18, 207, 221, 233
MboI GATC 4 cut(s) 16, 205, 219, 231
MboII GAAGA 8 cut(s) 48, 53, 108, 121, 124, 127, 130, 250
MflI RGATCY 4 cut(s) 16, 205, 219, 231
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 2 cut(s) 101, 320
MlyI GAGTC 1 cut(s) 69
MmeI TCCRAC 2 cut(s) 247, 259
MnlI CCTC 1 cut(s) 132
MspI CCGG 1 cut(s) 191
MspR9I CCNGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 260
NciI CCSGG 1 cut(s) 192
NdeII GATC 4 cut(s) 16, 205, 219, 231
NlaIV GGNNCC 3 cut(s) 132, 271, 283
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
PspN4I GGNNCC 3 cut(s) 132, 271, 283
PspPI GGNCC 1 cut(s) 269
PsuI RGATCY 4 cut(s) 16, 205, 219, 231
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
Sau3AI GATC 4 cut(s) 16, 205, 219, 231
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 1 cut(s) 40
SetI ASST 5 cut(s) 132, 136, 186, 287, 335
SfaNI GCATC 1 cut(s) 177
SinI GGWCC 1 cut(s) 269
Sse9I AATT 2 cut(s) 101, 320
SsiI CCGC 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 190
TasI AATT 2 cut(s) 101, 320
TspDTI ATGAA 2 cut(s) 17, 158
TspGWI ACGGA 1 cut(s) 159
VneI GTGCAC 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 269
XapI RAATTY 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.