Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004343

Physical Location & Seq

Genomic Coordinates Forward (+)

62540418 .. 62541878

Gene Structure 1461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00382700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGGGAAGCAACCGGTGAAGATGAGGGCGGTGGTGTACGCGCTGTCGCCGTTTCAGCAGAAGGTGATGCCCGGCCTCTGGAAGGACCTTCCGGCCAAGCTCCACCACAAGGTCTCCGAGAACTGGCTCAGCGCCACTCTCCTCCTCGCTCCTCTCGTCGCCGTCCACACGTATGTGCAGAATTACCAGGAGAAGGAGAAGCTGGAACACAGGCCCGAAAATGATATCCCTAATGGTTCCTTAATATCTACTGGTTGTGTCGGGTTGGTGGCACAGTATGAAGTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt_b-c1_8

Protein Analysis

96

Amino Acids

10.79

Weight (kDa)

8.76

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyt_b-c1_8	PF10890	1 - 71	1.4e-34	Cytochrome b-c1 complex subunit 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10860 AT3G10860 AT5G05370
fragaria_vesca	FvH4_3g40960 FvH4_4g07960 FvH4_4g32870
malus_domestica	MD03G1047800.v1.1 MD13G1094500.v1.1 MD16G1095600.v1.1
prunus_persica	Prupe.1G250900_v2.0.a1 Prupe.1G250900_v2.0.a1 Prupe.6G038800_v2.0.a1
pyrus_communis	pycom03g03770 pycom13g08230 pycom16g08160
rosa_chinensis	RchiOBHm_Chr4g0441891 RchiOBHm_Chr5g0073771
rosa_multiflora	Rmu_co8104398.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007570 Rroxscaffold_5G00382700
rosa_rugosa	Rorug04G0336800 Rorug04G0336800 Rorug05G0426200.1
rosa_samantha	Rh4BG402100 Rh4CG417200 Rh4DG395500 Rh5AG483300 Rh5BG504200 Rh5CG527800 Rh5DG516300
rosa_wichuraiana	Rw4G033540 Rw5G044950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	41
AciI	CCGC	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	93
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	5 cut(s)	78, 82, 109, 123, 193
AflIII	ACRYGT	1 cut(s)	168
AgeI	ACCGGT	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	186
AleI	CACNNNNGTG	1 cut(s)	173
AluBI	AGCT	2 cut(s)	100, 202
AluI	AGCT	2 cut(s)	100, 202
Alw26I	GTCTC	1 cut(s)	118
AoxI	GGCC	3 cut(s)	73, 93, 212
AsiGI	ACCGGT	1 cut(s)	13
AspLEI	GCGC	2 cut(s)	43, 134
AspS9I	GGNCC	2 cut(s)	85, 213
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	2 cut(s)	28, 76
AvaII	GGWCC	1 cut(s)	85
BceAI	ACGGC	2 cut(s)	34, 146
BciT130I	CCWGG	1 cut(s)	188
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	118
BfoI	RGCGCY	1 cut(s)	135
BlpI	GCTNAGC	1 cut(s)	128
Bme1390I	CCNGG	2 cut(s)	72, 188
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	2 cut(s)	85, 213
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	2 cut(s)	72, 188
BmsI	GCATC	1 cut(s)	57
Bpu1102I	GCTNAGC	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	118
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	5 cut(s)	78, 82, 109, 123, 193
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	2 cut(s)	128, 256
BseBI	CCWGG	1 cut(s)	188
BseLI	CCNNNNNNNGG	5 cut(s)	78, 82, 109, 123, 193
BseMII	CTCAG	1 cut(s)	142
BseNI	ACTGG	2 cut(s)	128, 256
BseRI	GAGGAG	3 cut(s)	131, 134, 141
BsgI	GTGCAG	1 cut(s)	197
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	3 cut(s)	75, 95, 214
BshTI	ACCGGT	1 cut(s)	13
BsiSI	CCGG	3 cut(s)	14, 72, 92
BslI	CCNNNNNNNGG	5 cut(s)	78, 82, 109, 123, 193
BsmAI	GTCTC	1 cut(s)	118
BsnI	GGCC	3 cut(s)	75, 95, 214
Bso31I	GGTCTC	1 cut(s)	118
Bsp1720I	GCTNAGC	1 cut(s)	128
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	3 cut(s)	75, 95, 214
BspCNI	CTCAG	1 cut(s)	141
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	238
BspTNI	GGTCTC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	13
BsrI	ACTGG	2 cut(s)	128, 256
BssAI	RCCGGY	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	276
BstBAI	YACGTR	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	128
BstENI	CCTNNNNNAGG	1 cut(s)	80
BstFNI	CGCG	1 cut(s)	41
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	2 cut(s)	43, 134
BstMAI	GTCTC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	2 cut(s)	70, 186
BstUI	CGCG	1 cut(s)	41
BsuRI	GGCC	3 cut(s)	75, 95, 214
CfoI	GCGC	2 cut(s)	43, 134
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	2 cut(s)	85, 213
Csp6I	GTAC	1 cut(s)	37
CspAI	ACCGGT	1 cut(s)	13
CviJI	RGCY	6 cut(s)	75, 95, 100, 127, 202, 214
CviKI_1	RGCY	6 cut(s)	75, 95, 100, 127, 202, 214
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	85
EcoNI	CCTNNNNNAGG	1 cut(s)	80
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	186
EcoRV	GATATC	1 cut(s)	226
FaiI	YATR	2 cut(s)	174, 279
GlaI	GCGC	2 cut(s)	42, 133
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	3 cut(s)	75, 95, 214
HapII	CCGG	3 cut(s)	14, 72, 92
HhaI	GCGC	2 cut(s)	43, 134
Hin6I	GCGC	2 cut(s)	41, 132
HinP1I	GCGC	2 cut(s)	41, 132
HpaII	CCGG	3 cut(s)	14, 72, 92
HphI	GGTGA	2 cut(s)	28, 76
Hpy166II	GTNNAC	2 cut(s)	37, 166
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	2 cut(s)	37, 166
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	4 cut(s)	55, 76, 98, 187
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4IV	ACGT	1 cut(s)	170
HpyCH4V	TGCA	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	170
HspAI	GCGC	2 cut(s)	41, 132
LmnI	GCTCC	2 cut(s)	105, 154
LweI	GCATC	1 cut(s)	57
MaeII	ACGT	1 cut(s)	170
MboII	GAAGA	1 cut(s)	31
MluCI	AATT	1 cut(s)	181
MnlI	CCTC	5 cut(s)	18, 86, 152, 155, 162
MseI	TTAA	1 cut(s)	242
MslI	CAYNNNNRTG	2 cut(s)	171, 173
MspI	CCGG	3 cut(s)	14, 72, 92
MspR9I	CCNGG	2 cut(s)	72, 188
MvaI	CCWGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	72
NlaIV	GGNNCC	1 cut(s)	238
OliI	CACNNNNGTG	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PinAI	ACCGGT	1 cut(s)	13
Ppu21I	YACGTR	1 cut(s)	171
PpuMI	RGGWCCY	1 cut(s)	85
Psp5II	RGGWCCY	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	2 cut(s)	85, 213
PspPPI	RGGWCCY	1 cut(s)	85
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	2 cut(s)	171, 173
SaqAI	TTAA	1 cut(s)	242
Sau96I	GGNCC	2 cut(s)	85, 213
ScrFI	CCNGG	2 cut(s)	72, 188
SetI	ASST	6 cut(s)	66, 90, 102, 114, 173, 204
SfaNI	GCATC	1 cut(s)	57
SinI	GGWCC	1 cut(s)	85
SmiMI	CAYNNNNRTG	2 cut(s)	171, 173
Sse9I	AATT	1 cut(s)	181
SsiI	CCGC	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	70, 186
TaaI	ACNGT	1 cut(s)	276
TaiI	ACGT	1 cut(s)	173
TasI	AATT	1 cut(s)	181
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	85
XagI	CCTNNNNNAGG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.