Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004343

Physical Location & Seq

Genomic Coordinates Forward (+)

2921591 .. 2923162

Gene Structure 1572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G038800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGGGAAGCAGCCGGTGAGGATGAAGGCAGTGGTGTACGCGCTGTCACCGTTTCAGCAGAAGGTGATGCCTGGTCTCTGGAAAGATCTGCCGACGAAGATCCACCACAAGATCTCCGAGAACTGGATCAGCGCCACCCTCCTTCTCGGCCCACTCGTCGGCGTCTACTCGTATGTTCAGAGCTACCAGGAAAAGGAGAAGTTGGAGCACAGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt_b-c1_8

Protein Analysis

73

Amino Acids

8.39

Weight (kDa)

9.65

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10860 AT3G10860 AT5G05370
fragaria_vesca	FvH4_3g40960 FvH4_4g07960 FvH4_4g32870
malus_domestica	MD03G1047800.v1.1 MD13G1094500.v1.1 MD16G1095600.v1.1
prunus_persica	Prupe.1G250900_v2.0.a1 Prupe.1G250900_v2.0.a1 Prupe.6G038800_v2.0.a1
pyrus_communis	pycom03g03770 pycom13g08230 pycom16g08160
rosa_chinensis	RchiOBHm_Chr4g0441891 RchiOBHm_Chr5g0073771
rosa_multiflora	Rmu_co8104398.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007570 Rroxscaffold_5G00382700
rosa_rugosa	Rorug04G0336800 Rorug04G0336800 Rorug05G0426200.1
rosa_samantha	Rh4BG402100 Rh4CG417200 Rh4DG395500 Rh5AG483300 Rh5BG504200 Rh5CG527800 Rh5DG516300
rosa_wichuraiana	Rw4G033540 Rw5G044950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	1 cut(s)	41
AclWI	GGATC	2 cut(s)	94, 134
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	2 cut(s)	38, 215
AfiI	CCNNNNNNNGG	3 cut(s)	123, 158, 193
AjnI	CCWGG	2 cut(s)	70, 186
AluBI	AGCT	1 cut(s)	183
AluI	AGCT	1 cut(s)	183
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	2 cut(s)	94, 134
AlwNI	CAGNNNCTG	1 cut(s)	216
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	10
AspLEI	GCGC	2 cut(s)	43, 134
AspS9I	GGNCC	1 cut(s)	149
AsuHPI	GGTGA	3 cut(s)	28, 39, 76
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	22
BciT130I	CCWGG	2 cut(s)	72, 188
BcoDI	GTCTC	1 cut(s)	80
BfoI	RGCGCY	1 cut(s)	135
BglII	AGATCT	2 cut(s)	85, 111
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme1390I	CCNGG	2 cut(s)	72, 188
BmgT120I	GGNCC	1 cut(s)	149
BmrFI	CCNGG	2 cut(s)	72, 188
BmsI	GCATC	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	80
BsaXI	ACNNNNNCTCC	3 cut(s)	98, 128, 197
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 158, 193
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	72, 188
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	3 cut(s)	123, 158, 193
BseNI	ACTGG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	14
BslI	CCNNNNNNNGG	3 cut(s)	123, 158, 193
BsmAI	GTCTC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	150
Bso31I	GGTCTC	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	4 cut(s)	85, 99, 111, 126
BspANI	GGCC	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	41
BspPI	GGATC	2 cut(s)	94, 134
BspTNI	GGTCTC	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	13
BssMI	GATC	4 cut(s)	85, 99, 111, 126
BssNI	GRCGYC	1 cut(s)	162
Bst2UI	CCWGG	2 cut(s)	72, 188
Bst4CI	ACNGT	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	41
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	2 cut(s)	43, 134
BstKTI	GATC	4 cut(s)	88, 102, 114, 129
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	4 cut(s)	85, 99, 111, 126
BstNI	CCWGG	2 cut(s)	72, 188
BstSCI	CCNGG	2 cut(s)	70, 186
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	3 cut(s)	85, 99, 111
BstYI	RGATCY	3 cut(s)	85, 99, 111
BsuRI	GGCC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	27
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	36
CaiI	CAGNNNCTG	1 cut(s)	216
CfoI	GCGC	2 cut(s)	43, 134
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	149
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	2 cut(s)	37, 214
CviJI	RGCY	3 cut(s)	13, 150, 183
CviKI_1	RGCY	3 cut(s)	13, 150, 183
CviQI	GTAC	2 cut(s)	37, 214
DpnI	GATC	4 cut(s)	87, 101, 113, 128
DpnII	GATC	4 cut(s)	85, 99, 111, 126
Eco31I	GGTCTC	1 cut(s)	80
EcoRII	CCWGG	2 cut(s)	70, 186
FaiI	YATR	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	11
GlaI	GCGC	2 cut(s)	42, 133
GluI	GCNGC	1 cut(s)	11
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	1 cut(s)	14
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	2 cut(s)	43, 134
Hin1I	GRCGYC	1 cut(s)	162
Hin6I	GCGC	2 cut(s)	41, 132
HinP1I	GCGC	2 cut(s)	41, 132
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	3 cut(s)	28, 39, 76
Hpy166II	GTNNAC	2 cut(s)	37, 166
Hpy188I	TCNGA	2 cut(s)	118, 180
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	2 cut(s)	37, 166
Hpy99I	CGWCG	2 cut(s)	97, 161
HpyAV	CCTTC	3 cut(s)	19, 55, 152
HpyCH4III	ACNGT	1 cut(s)	51
Hsp92I	GRCGYC	1 cut(s)	162
HspAI	GCGC	2 cut(s)	41, 132
Kzo9I	GATC	4 cut(s)	85, 99, 111, 126
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	8 cut(s)	27, 57, 64, 84, 109, 173, 196, 200
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	45
MalI	GATC	4 cut(s)	87, 101, 113, 128
MboI	GATC	4 cut(s)	85, 99, 111, 126
MboII	GAAGA	1 cut(s)	109
MflI	RGATCY	3 cut(s)	85, 99, 111
MhlI	GDGCHC	1 cut(s)	210
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	2 cut(s)	12, 149
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	2 cut(s)	72, 188
MvaI	CCWGG	2 cut(s)	72, 188
MvnI	CGCG	1 cut(s)	41
NdeII	GATC	4 cut(s)	85, 99, 111, 126
NmeAIII	GCCGAG	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	70, 186
PspGI	CCWGG	2 cut(s)	70, 186
PspPI	GGNCC	1 cut(s)	149
PstNI	CAGNNNCTG	1 cut(s)	216
PsuI	RGATCY	3 cut(s)	85, 99, 111
RsaI	GTAC	2 cut(s)	38, 215
RsaNI	GTAC	2 cut(s)	37, 214
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	4 cut(s)	85, 99, 111, 126
Sau96I	GGNCC	1 cut(s)	149
ScrFI	CCNGG	2 cut(s)	72, 188
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	3 cut(s)	66, 185, 215
SfaNI	GCATC	1 cut(s)	57
StyD4I	CCNGG	2 cut(s)	70, 186
TaaI	ACNGT	1 cut(s)	51
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	45
TspDTI	ATGAA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	36
XmiI	GTMKAC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.