Prupe.1G250900_v2.0.a1

Cytochrome b-c1 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0004343
Physical Location & Seq
Reverse (-)
26260900 .. 26262034
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G250900.2

Sequence Viewer

Length: 219 bp
ATGGGGAAGCATCCGGTGCAGATGAGAGCAGTGGTGTACTCGCTGTCGCCGTTCCAGCAGAAGGTGATGCCTGGGCTGTGGAAGGACTTCACCGGCAAGATCCACCACAAGGTCTCCGAGAACTGGCTCAGCGCCACTCTCCTTCTCGCTCCTCTCGTCGCCACCTACACGTATGTGCAGCAATACCAAGAGAAGGAGAAGTTGGAACACAGGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyt_b-c1_8

Protein Analysis

73

Amino Acids

8.48

Weight (kDa)

9.52

Isoelectric Point (pI)

33.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 94
AfaI GTAC 2 cut(s) 38, 215
AfiI CCNNNNNNNGG 4 cut(s) 61, 109, 123, 193
AflIII ACRYGT 1 cut(s) 168
AjnI CCWGG 1 cut(s) 70
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AleI CACNNNNGTG 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 118
AlwI GGATC 1 cut(s) 94
AlwNI CAGNNNCTG 1 cut(s) 216
ApeKI GCWGC 1 cut(s) 178
Asp700I GAANNNNTTC 1 cut(s) 86
AspLEI GCGC 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 76, 82
BbvI GCAGC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 118
BfoI RGCGCY 1 cut(s) 135
BisI GCNGC 1 cut(s) 179
BlpI GCTNAGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 180
Bme1390I CCNGG 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 2 cut(s) 19, 57
Bpu1102I GCTNAGC 1 cut(s) 128
BsaAI YACGTR 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 71
BsaWI WCCGGW 1 cut(s) 13
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 109, 123, 193
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 71
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 4 cut(s) 61, 109, 123, 193
BseMII CTCAG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 190
BsgI GTGCAG 2 cut(s) 38, 197
BsiSI CCGG 2 cut(s) 14, 93
BslI CCNNNNNNNGG 4 cut(s) 61, 109, 123, 193
BsmAI GTCTC 1 cut(s) 118
Bso31I GGTCTC 1 cut(s) 118
Bsp143I GATC 1 cut(s) 99
Bsp1720I GCTNAGC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 141
BspPI GGATC 1 cut(s) 94
BspTNI GGTCTC 1 cut(s) 118
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 16
BstBAI YACGTR 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 2 cut(s) 16, 55
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
CaiI CAGNNNCTG 1 cut(s) 216
CfoI GCGC 1 cut(s) 134
Cfr10I RCCGGY 1 cut(s) 92
Csp6I GTAC 2 cut(s) 37, 214
CviJI RGCY 2 cut(s) 76, 127
CviKI_1 RGCY 2 cut(s) 76, 127
CviQI GTAC 2 cut(s) 37, 214
DdeI CTNAG 1 cut(s) 128
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 70
FaiI YATR 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 179
GlaI GCGC 1 cut(s) 133
GluI GCNGC 1 cut(s) 179
HaeII RGCGCY 1 cut(s) 135
HapII CCGG 2 cut(s) 14, 93
HhaI GCGC 1 cut(s) 134
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HpaII CCGG 2 cut(s) 14, 93
HphI GGTGA 2 cut(s) 76, 82
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 118
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 4 cut(s) 55, 76, 152, 187
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 2 cut(s) 19, 178
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 55
HpyF3I CTNAG 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 170
HspAI GCGC 1 cut(s) 132
Kzo9I GATC 1 cut(s) 99
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 7 cut(s) 27, 57, 68, 84, 106, 109, 196
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 2 cut(s) 19, 57
MaeII ACGT 1 cut(s) 170
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MflI RGATCY 1 cut(s) 99
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 1 cut(s) 162
MroXI GAANNNNTTC 1 cut(s) 86
MslI CAYNNNNRTG 1 cut(s) 173
MspI CCGG 2 cut(s) 14, 93
MspR9I CCNGG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 16, 55
NdeII GATC 1 cut(s) 99
OliI CACNNNNGTG 1 cut(s) 173
PcsI WCGNNNNNNNCGW 2 cut(s) 47, 153
PdmI GAANNNNTTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 180
Ppu21I YACGTR 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 216
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 2 cut(s) 38, 215
RsaNI GTAC 2 cut(s) 37, 214
RseI CAYNNNNRTG 1 cut(s) 173
SatI GCNGC 1 cut(s) 179
Sau3AI GATC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 72
SetI ASST 5 cut(s) 66, 114, 167, 173, 215
SfaNI GCATC 2 cut(s) 19, 57
SmiMI CAYNNNNRTG 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 70
TaiI ACGT 1 cut(s) 173
TatI WGTACW 1 cut(s) 36
TscAI CASTG 1 cut(s) 36
TseI GCWGC 1 cut(s) 178
TspRI CASTG 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.