FvH4_4g32870

Cytochrome b-c1 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0004343
Physical Location & Seq
Forward (+)
31321345 .. 31322316
972 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32870.t1

Sequence Viewer

Length: 219 bp
ATGGGGAAGACTCCGGTGAAGATGAGGGCGGTGGTGTACGCGCTGTCGCCGTTCCAGCAGAAGGTGATGCCCGGCCTCTGGAAGGACCTTCCGGCCAAGCTCCACCACAAGGTCTCCGAGAACTGGCTCAGCGCCACTCTCCTCCTCGCTCCTCTCATCGCCGTCCGCATGTATGTGGATAATTACCAAGAGAAGGAGAAGCTGGCACACAGGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyt_b-c1_8

Protein Analysis

73

Amino Acids

8.35

Weight (kDa)

9.85

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyt_b-c1_8 PF10890 1 - 72 2.7e-35 Cytochrome b-c1 complex subunit 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 41
AciI CCGC 2 cut(s) 29, 166
AcoI YGGCCR 1 cut(s) 93
AfaI GTAC 2 cut(s) 38, 215
AfiI CCNNNNNNNGG 6 cut(s) 61, 78, 82, 109, 123, 193
AluBI AGCT 2 cut(s) 100, 202
AluI AGCT 2 cut(s) 100, 202
Alw26I GTCTC 1 cut(s) 118
AlwNI CAGNNNCTG 1 cut(s) 216
AoxI GGCC 2 cut(s) 73, 93
AspLEI GCGC 2 cut(s) 43, 134
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 2 cut(s) 28, 76
AvaII GGWCC 1 cut(s) 85
BbsI GAAGAC 1 cut(s) 14
BceAI ACGGC 2 cut(s) 34, 146
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 118
BfoI RGCGCY 1 cut(s) 135
BlpI GCTNAGC 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 14
Bpu1102I GCTNAGC 1 cut(s) 128
BpuMI CCSGG 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 118
BsaWI WCCGGW 1 cut(s) 13
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 6 cut(s) 61, 78, 82, 109, 123, 193
Bse1I ACTGG 1 cut(s) 128
BseLI CCNNNNNNNGG 6 cut(s) 61, 78, 82, 109, 123, 193
BseMII CTCAG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 3 cut(s) 131, 134, 141
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 2 cut(s) 75, 95
BsiSI CCGG 3 cut(s) 14, 72, 92
BslI CCNNNNNNNGG 6 cut(s) 61, 78, 82, 109, 123, 193
BsmAI GTCTC 1 cut(s) 118
BsnI GGCC 2 cut(s) 75, 95
Bso31I GGTCTC 1 cut(s) 118
Bsp1720I GCTNAGC 1 cut(s) 128
BspACI CCGC 2 cut(s) 29, 166
BspANI GGCC 2 cut(s) 75, 95
BspCNI CTCAG 1 cut(s) 141
BspFNI CGCG 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 118
BsrI ACTGG 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 1 cut(s) 128
BstENI CCTNNNNNAGG 1 cut(s) 80
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 2 cut(s) 43, 134
BstMAI GTCTC 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 70
BstUI CGCG 1 cut(s) 41
BstV2I GAAGAC 1 cut(s) 14
BsuRI GGCC 2 cut(s) 75, 95
BtgZI GCGATG 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 204
CaiI CAGNNNCTG 1 cut(s) 216
CfoI GCGC 2 cut(s) 43, 134
Cfr13I GGNCC 1 cut(s) 85
Csp6I GTAC 2 cut(s) 37, 214
CviAII CATG 1 cut(s) 169
CviJI RGCY 5 cut(s) 75, 95, 100, 127, 202
CviKI_1 RGCY 5 cut(s) 75, 95, 100, 127, 202
CviQI GTAC 2 cut(s) 37, 214
DdeI CTNAG 1 cut(s) 128
EaeI YGGCCR 1 cut(s) 93
Eco31I GGTCTC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 85
EcoNI CCTNNNNNAGG 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 85
FaeI CATG 1 cut(s) 172
FaiI YATR 2 cut(s) 170, 174
FatI CATG 1 cut(s) 168
GlaI GCGC 2 cut(s) 42, 133
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 2 cut(s) 75, 95
HapII CCGG 3 cut(s) 14, 72, 92
HhaI GCGC 2 cut(s) 43, 134
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 2 cut(s) 41, 132
HinP1I GCGC 2 cut(s) 41, 132
HinfI GANTC 1 cut(s) 10
HpaII CCGG 3 cut(s) 14, 72, 92
HphI GGTGA 2 cut(s) 28, 76
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 4 cut(s) 55, 76, 98, 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 2 cut(s) 41, 132
LmnI GCTCC 2 cut(s) 105, 154
LpnPI CCDG 8 cut(s) 27, 64, 68, 85, 105, 109, 188, 196
LweI GCATC 1 cut(s) 57
MboII GAAGA 2 cut(s) 19, 31
MluCI AATT 1 cut(s) 181
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 5 cut(s) 18, 86, 152, 155, 162
MslI CAYNNNNRTG 1 cut(s) 173
MspI CCGG 3 cut(s) 14, 72, 92
MspR9I CCNGG 1 cut(s) 72
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 55
NciI CCSGG 1 cut(s) 72
NlaIII CATG 1 cut(s) 172
NspI RCATGY 1 cut(s) 172
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PpuMI RGGWCCY 1 cut(s) 85
Psp5II RGGWCCY 1 cut(s) 85
PspPI GGNCC 1 cut(s) 85
PspPPI RGGWCCY 1 cut(s) 85
PstNI CAGNNNCTG 1 cut(s) 216
RsaI GTAC 2 cut(s) 38, 215
RsaNI GTAC 2 cut(s) 37, 214
RseI CAYNNNNRTG 1 cut(s) 173
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 72
SetI ASST 6 cut(s) 66, 90, 102, 114, 204, 215
SfaNI GCATC 1 cut(s) 57
SinI GGWCC 1 cut(s) 85
SmiMI CAYNNNNRTG 1 cut(s) 173
Sse9I AATT 1 cut(s) 181
SsiI CCGC 2 cut(s) 29, 166
StyD4I CCNGG 1 cut(s) 70
TasI AATT 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 85
XagI CCTNNNNNAGG 1 cut(s) 80
XceI RCATGY 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.