Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004343

Physical Location & Seq

Genomic Coordinates Forward (+)

2998802 .. 3000021

Gene Structure 1220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g03770.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGGCAAAGCGGTTTCATTTGACATCAGAGAGGACGGAGAAGAAGGGAAGTTGAGAAGTTTCTGGAGAGGACTGAGAAAAATGGGGAAGCTGCCGGTGAAGATGAAGGCGGTGGTGTACGCCCTGTCGCCGTTCCAGCAGAAGGTGATGCCGGGACTCTGGAAAGATCTGCCCAACAAGATCCACCACAAGGTCTCCGAGAACTGGATTAGCGCCACCCTCCTCCTCGGCCCTCTCGTCGGCGTCTACACGTATGTTAATGCCTACCAGGAAAAGGAGAAGATGGAGCACAGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt_b-c1_8

Protein Analysis

100

Amino Acids

11.49

Weight (kDa)

9.73

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10860 AT3G10860 AT5G05370
fragaria_vesca	FvH4_3g40960 FvH4_4g07960 FvH4_4g32870
malus_domestica	MD03G1047800.v1.1 MD13G1094500.v1.1 MD16G1095600.v1.1
prunus_persica	Prupe.1G250900_v2.0.a1 Prupe.1G250900_v2.0.a1 Prupe.6G038800_v2.0.a1
pyrus_communis	pycom03g03770 pycom13g08230 pycom16g08160
rosa_chinensis	RchiOBHm_Chr4g0441891 RchiOBHm_Chr5g0073771
rosa_multiflora	Rmu_co8104398.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007570 Rroxscaffold_5G00382700
rosa_rugosa	Rorug04G0336800 Rorug04G0336800 Rorug05G0426200.1
rosa_samantha	Rh4BG402100 Rh4CG417200 Rh4DG395500 Rh5AG483300 Rh5BG504200 Rh5CG527800 Rh5DG516300
rosa_wichuraiana	Rw4G033540 Rw5G044950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	246
AciI	CCGC	2 cut(s)	11, 110
AclWI	GGATC	1 cut(s)	175
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	2 cut(s)	119, 296
AfiI	CCNNNNNNNGG	5 cut(s)	142, 190, 204, 239, 274
AflIII	ACRYGT	1 cut(s)	249
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	175
AlwNI	CAGNNNCTG	1 cut(s)	297
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	91
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	230
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	2 cut(s)	109, 157
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	1 cut(s)	277
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	269
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	199
BfoI	RGCGCY	1 cut(s)	216
BglII	AGATCT	1 cut(s)	166
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	2 cut(s)	153, 269
BmgT120I	GGNCC	1 cut(s)	230
BmrFI	CCNGG	2 cut(s)	153, 269
BmsI	GCATC	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	85
BpuMI	CCSGG	1 cut(s)	153
BsaAI	YACGTR	1 cut(s)	252
BsaHI	GRCGYC	1 cut(s)	243
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	1 cut(s)	226
BsaXI	ACNNNNNCTCC	3 cut(s)	179, 209, 278
Bsc4I	CCNNNNNNNGG	5 cut(s)	142, 190, 204, 239, 274
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	226
BseLI	CCNNNNNNNGG	5 cut(s)	142, 190, 204, 239, 274
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	2 cut(s)	212, 215
BseXI	GCAGC	1 cut(s)	78
BshFI	GGCC	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	2 cut(s)	95, 152
BslFI	GGGAC	1 cut(s)	168
BslI	CCNNNNNNNGG	5 cut(s)	142, 190, 204, 239, 274
BsmAI	GTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	231
Bso31I	GGTCTC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	166, 180
BspACI	CCGC	2 cut(s)	11, 110
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	1 cut(s)	66
BspPI	GGATC	1 cut(s)	175
BspTNI	GGTCTC	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	2 cut(s)	166, 180
BssNI	GRCGYC	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	269
BstACI	GRCGYC	1 cut(s)	243
BstBAI	YACGTR	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	74
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	2 cut(s)	169, 183
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	2 cut(s)	166, 180
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	151, 267
BstV1I	GCAGC	1 cut(s)	78
BstX2I	RGATCY	2 cut(s)	166, 180
BstYI	RGATCY	2 cut(s)	166, 180
BsuRI	GGCC	1 cut(s)	231
CaiI	CAGNNNCTG	1 cut(s)	297
CfoI	GCGC	1 cut(s)	215
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	230
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	118, 295
CviJI	RGCY	2 cut(s)	91, 231
CviKI_1	RGCY	2 cut(s)	91, 231
CviQI	GTAC	2 cut(s)	118, 295
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	2 cut(s)	168, 182
DpnII	GATC	2 cut(s)	166, 180
Eco31I	GGTCTC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	267
FaiI	YATR	1 cut(s)	255
FaqI	GGGAC	1 cut(s)	168
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	92
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	1 cut(s)	92
GsuI	CTGGAG	1 cut(s)	85
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	2 cut(s)	95, 152
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	1 cut(s)	215
Hin1I	GRCGYC	1 cut(s)	243
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HinfI	GANTC	1 cut(s)	156
HpaII	CCGG	2 cut(s)	95, 152
HphI	GGTGA	2 cut(s)	109, 157
Hpy166II	GTNNAC	2 cut(s)	118, 247
Hpy188I	TCNGA	2 cut(s)	29, 199
Hpy188III	TCNNGA	2 cut(s)	64, 160
Hpy8I	GTNNAC	2 cut(s)	118, 247
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	3 cut(s)	38, 100, 136
HpyCH4IV	ACGT	1 cut(s)	251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	251
Hsp92I	GRCGYC	1 cut(s)	243
HspAI	GCGC	1 cut(s)	213
Kzo9I	GATC	2 cut(s)	166, 180
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	1 cut(s)	138
MaeII	ACGT	1 cut(s)	251
MalI	GATC	2 cut(s)	168, 182
MboI	GATC	2 cut(s)	166, 180
MboII	GAAGA	3 cut(s)	53, 112, 292
MflI	RGATCY	2 cut(s)	166, 180
MhlI	GDGCHC	1 cut(s)	291
MlyI	GAGTC	1 cut(s)	150
MnlI	CCTC	6 cut(s)	25, 62, 230, 233, 236, 243
MseI	TTAA	1 cut(s)	258
MspI	CCGG	2 cut(s)	95, 152
MspR9I	CCNGG	2 cut(s)	153, 269
MvaI	CCWGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	136
NciI	CCSGG	1 cut(s)	153
NdeII	GATC	2 cut(s)	166, 180
NmeAIII	GCCGAG	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
Ppu21I	YACGTR	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	230
PstNI	CAGNNNCTG	1 cut(s)	297
PsuI	RGATCY	2 cut(s)	166, 180
RsaI	GTAC	2 cut(s)	119, 296
RsaNI	GTAC	2 cut(s)	118, 295
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	2 cut(s)	166, 180
Sau96I	GGNCC	1 cut(s)	230
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	2 cut(s)	153, 269
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	5 cut(s)	93, 147, 195, 254, 296
SfaNI	GCATC	1 cut(s)	138
SsiI	CCGC	2 cut(s)	11, 110
StyD4I	CCNGG	2 cut(s)	151, 267
TaiI	ACGT	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TseI	GCWGC	1 cut(s)	91
TspDTI	ATGAA	2 cut(s)	6, 119
TspGWI	ACGGA	1 cut(s)	51
XmiI	GTMKAC	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.