Rroxscaffold_1G00007570

Cytochrome b-c1 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004343
Physical Location & Seq
Forward (+)
9699626 .. 9701837
2212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00007570.1

Sequence Viewer

Length: 306 bp
ATGGGGAAGCAACCGGTGAGGATGAAGGCGGTGGTATACGCGCTGTCGCCGTTTCAGCAGAAGGTGATGCCGGGTCTCTGGAAAGATCTGCCTACGAAGATCCACCACAAGATCTCCGAGAACTGGCACAGCGCTATCTTCCTCCTCGGACCCGTCGTCGGAACCTATGCGTTAGGAAGAAAATGGAAGGTGGCTGCTTTTGGTTTTTGTTATGATGGATTGGTTTATAACAGTGTTGATTACAGAGGATTCACATGGTATGTTCAGAACTACAAGGAAAAGGAGAAGTTGGAGCATAGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyt_b-c1_8

Protein Analysis

101

Amino Acids

11.84

Weight (kDa)

9.71

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyt_b-c1_8 PF10890 1 - 57 2.3e-28 Cytochrome b-c1 complex subunit 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 228
AccI GTMKAC 1 cut(s) 36
AccII CGCG 1 cut(s) 41
AciI CCGC 1 cut(s) 29
AclWI GGATC 1 cut(s) 94
AfeI AGCGCT 1 cut(s) 133
AfiI CCNNNNNNNGG 2 cut(s) 123, 158
AgeI ACCGGT 1 cut(s) 13
AhdI GACNNNNNGTC 1 cut(s) 155
AloI GAACNNNNNNTCC 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 1 cut(s) 94
Aor51HI AGCGCT 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 194
AsiGI ACCGGT 1 cut(s) 13
AspLEI GCGC 2 cut(s) 43, 134
AspS9I GGNCC 1 cut(s) 149
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 2 cut(s) 28, 76
AvaII GGWCC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 181
BccI CCATC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 34
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 135
BglII AGATCT 2 cut(s) 85, 111
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 149
BmeRI GACNNNNNGTC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 151, 163
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 57
BpuMI CCSGG 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 145
BsaWI WCCGGW 1 cut(s) 13
BsaXI ACNNNNNCTCC 3 cut(s) 98, 128, 284
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 158
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 1 cut(s) 27
BseLI CCNNNNNNNGG 2 cut(s) 123, 158
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 41
BshTI ACCGGT 1 cut(s) 13
BsiSI CCGG 2 cut(s) 14, 71
BslI CCNNNNNNNGG 2 cut(s) 123, 158
BsmAI GTCTC 1 cut(s) 80
Bso31I GGTCTC 1 cut(s) 80
Bsp143I GATC 3 cut(s) 85, 99, 111
BspACI CCGC 1 cut(s) 29
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 2 cut(s) 151, 163
BspPI GGATC 1 cut(s) 94
BspTNI GGTCTC 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 13
BsrI ACTGG 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 3 cut(s) 85, 99, 111
BssNAI GTATAC 1 cut(s) 37
Bst1107I GTATAC 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 233
BstF5I GGATG 1 cut(s) 27
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 2 cut(s) 43, 134
BstKTI GATC 3 cut(s) 88, 102, 114
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 3 cut(s) 85, 99, 111
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 70
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 181
BstX2I RGATCY 3 cut(s) 85, 99, 111
BstYI RGATCY 3 cut(s) 85, 99, 111
BstZ17I GTATAC 1 cut(s) 37
BtsCI GGATG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 238
CfoI GCGC 2 cut(s) 43, 134
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 149
CspAI ACCGGT 1 cut(s) 13
CviAII CATG 1 cut(s) 255
CviJI RGCY 1 cut(s) 194
CviKI_1 RGCY 1 cut(s) 194
DpnI GATC 3 cut(s) 87, 101, 113
DpnII GATC 3 cut(s) 85, 99, 111
DriI GACNNNNNGTC 1 cut(s) 155
Eam1105I GACNNNNNGTC 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 149
Eco47III AGCGCT 1 cut(s) 133
FaeI CATG 1 cut(s) 258
FaiI YATR 7 cut(s) 37, 168, 213, 228, 256, 261, 297
FatI CATG 1 cut(s) 254
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 195
GlaI GCGC 2 cut(s) 42, 133
GluI GCNGC 1 cut(s) 195
HaeII RGCGCY 1 cut(s) 135
HapII CCGG 2 cut(s) 14, 71
HhaI GCGC 2 cut(s) 43, 134
Hin1II CATG 1 cut(s) 258
Hin6I GCGC 2 cut(s) 41, 132
HinP1I GCGC 2 cut(s) 41, 132
HinfI GANTC 1 cut(s) 249
HpaII CCGG 2 cut(s) 14, 71
HphI GGTGA 2 cut(s) 28, 76
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 5 cut(s) 118, 149, 161, 267, 305
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 2 cut(s) 158, 161
HpyAV CCTTC 3 cut(s) 19, 55, 181
HpyCH4III ACNGT 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
Hsp92II CATG 1 cut(s) 258
HspAI GCGC 2 cut(s) 41, 132
Kzo9I GATC 3 cut(s) 85, 99, 111
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 4 cut(s) 27, 64, 84, 109
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 1 cut(s) 57
MalI GATC 3 cut(s) 87, 101, 113
MboI GATC 3 cut(s) 85, 99, 111
MboII GAAGA 3 cut(s) 109, 130, 189
MflI RGATCY 3 cut(s) 85, 99, 111
MmeI TCCRAC 2 cut(s) 139, 270
MnlI CCTC 4 cut(s) 12, 152, 155, 239
MspI CCGG 2 cut(s) 14, 71
MspR9I CCNGG 1 cut(s) 72
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 55
NciI CCSGG 1 cut(s) 72
NdeII GATC 3 cut(s) 85, 99, 111
NlaIII CATG 1 cut(s) 258
NlaIV GGNNCC 2 cut(s) 151, 163
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PfeI GAWTC 1 cut(s) 249
PinAI ACCGGT 1 cut(s) 13
PkrI GCNGC 1 cut(s) 196
PsiI TTATAA 1 cut(s) 228
PspN4I GGNNCC 2 cut(s) 151, 163
PspPI GGNCC 1 cut(s) 149
PsuI RGATCY 3 cut(s) 85, 99, 111
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 3 cut(s) 85, 99, 111
Sau96I GGNCC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 72
SetI ASST 4 cut(s) 66, 167, 192, 302
SfaNI GCATC 1 cut(s) 57
SinI GGWCC 1 cut(s) 149
SsiI CCGC 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 233
TfiI GAWTC 1 cut(s) 249
TscAI CASTG 1 cut(s) 238
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 38
TspRI CASTG 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.