Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004343

Physical Location & Seq

Genomic Coordinates Forward (+)

3841683 .. 3843392

Gene Structure 1710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1047800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGGGAAGCTGCCGGTGAAGATGAAGGCGGTGGTGTACGCCCTGTCGCCGTTCCAGCAGAAGGTGATGCCGGGACTCTGGAAAGATCTGCCCAACAAGATCCACCACAAGGTCTCCGAGAACTGGATTAGCGCCACCCTCCTCCTCGGCCCTCTCGTCGGCGTCTACACGTATGTTAATGCCTACCAGGAAAAGGAGAAGATGGAGCACAGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt_b-c1_8

Protein Analysis

73

Amino Acids

8.34

Weight (kDa)

9.6

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyt_b-c1_8	PF10890	1 - 72	1.3e-36	Cytochrome b-c1 complex subunit 8
UcrQ	PF02939	8 - 65	3.6e-06	UcrQ family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10860 AT3G10860 AT5G05370
fragaria_vesca	FvH4_3g40960 FvH4_4g07960 FvH4_4g32870
malus_domestica	MD03G1047800.v1.1 MD13G1094500.v1.1 MD16G1095600.v1.1
prunus_persica	Prupe.1G250900_v2.0.a1 Prupe.1G250900_v2.0.a1 Prupe.6G038800_v2.0.a1
pyrus_communis	pycom03g03770 pycom13g08230 pycom16g08160
rosa_chinensis	RchiOBHm_Chr4g0441891 RchiOBHm_Chr5g0073771
rosa_multiflora	Rmu_co8104398.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007570 Rroxscaffold_5G00382700
rosa_rugosa	Rorug04G0336800 Rorug04G0336800 Rorug05G0426200.1
rosa_samantha	Rh4BG402100 Rh4CG417200 Rh4DG395500 Rh5AG483300 Rh5BG504200 Rh5CG527800 Rh5DG516300
rosa_wichuraiana	Rw4G033540 Rw5G044950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	165
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	1 cut(s)	94
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	2 cut(s)	38, 215
AfiI	CCNNNNNNNGG	5 cut(s)	61, 109, 123, 158, 193
AflIII	ACRYGT	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	118
AlwI	GGATC	1 cut(s)	94
AlwNI	CAGNNNCTG	1 cut(s)	216
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	149
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	2 cut(s)	28, 76
Bbv12I	GWGCWC	1 cut(s)	210
BccI	CCATC	1 cut(s)	196
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	188
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	118
BfoI	RGCGCY	1 cut(s)	135
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme1390I	CCNGG	2 cut(s)	72, 188
BmgT120I	GGNCC	1 cut(s)	149
BmrFI	CCNGG	2 cut(s)	72, 188
BmsI	GCATC	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	145
BsaXI	ACNNNNNCTCC	3 cut(s)	98, 128, 197
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 109, 123, 158, 193
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	145
BseLI	CCNNNNNNNGG	5 cut(s)	61, 109, 123, 158, 193
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	2 cut(s)	131, 134
BshFI	GGCC	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	14, 71
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	5 cut(s)	61, 109, 123, 158, 193
BsmAI	GTCTC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	150
Bso31I	GGTCTC	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	85, 99
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	2 cut(s)	85, 99
BssNI	GRCGYC	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	188
BstACI	GRCGYC	1 cut(s)	162
BstBAI	YACGTR	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	2 cut(s)	88, 102
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	2 cut(s)	85, 99
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	2 cut(s)	70, 186
BstX2I	RGATCY	2 cut(s)	85, 99
BstYI	RGATCY	2 cut(s)	85, 99
BsuRI	GGCC	1 cut(s)	150
CaiI	CAGNNNCTG	1 cut(s)	216
CfoI	GCGC	1 cut(s)	134
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	149
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	2 cut(s)	37, 214
CviJI	RGCY	2 cut(s)	10, 150
CviKI_1	RGCY	2 cut(s)	10, 150
CviQI	GTAC	2 cut(s)	37, 214
DpnI	GATC	2 cut(s)	87, 101
DpnII	GATC	2 cut(s)	85, 99
Eco31I	GGTCTC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	186
FaiI	YATR	1 cut(s)	174
FaqI	GGGAC	1 cut(s)	87
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	11
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	1 cut(s)	11
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	2 cut(s)	14, 71
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	162
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HinfI	GANTC	1 cut(s)	75
HpaII	CCGG	2 cut(s)	14, 71
HphI	GGTGA	2 cut(s)	28, 76
Hpy166II	GTNNAC	2 cut(s)	37, 166
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	2 cut(s)	37, 166
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	19, 55
HpyCH4IV	ACGT	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpySE526I	ACGT	1 cut(s)	170
Hsp92I	GRCGYC	1 cut(s)	162
HspAI	GCGC	1 cut(s)	132
Kzo9I	GATC	2 cut(s)	85, 99
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	9 cut(s)	27, 56, 64, 68, 84, 109, 173, 196, 200
LweI	GCATC	1 cut(s)	57
MaeII	ACGT	1 cut(s)	170
MalI	GATC	2 cut(s)	87, 101
MboI	GATC	2 cut(s)	85, 99
MboII	GAAGA	2 cut(s)	31, 211
MflI	RGATCY	2 cut(s)	85, 99
MhlI	GDGCHC	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	69
MnlI	CCTC	4 cut(s)	149, 152, 155, 162
MseI	TTAA	1 cut(s)	177
MspI	CCGG	2 cut(s)	14, 71
MspR9I	CCNGG	2 cut(s)	72, 188
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	2 cut(s)	85, 99
NmeAIII	GCCGAG	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	12
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
Ppu21I	YACGTR	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	149
PstNI	CAGNNNCTG	1 cut(s)	216
PsuI	RGATCY	2 cut(s)	85, 99
RsaI	GTAC	2 cut(s)	38, 215
RsaNI	GTAC	2 cut(s)	37, 214
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	2 cut(s)	85, 99
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	2 cut(s)	72, 188
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	5 cut(s)	12, 66, 114, 173, 215
SfaNI	GCATC	1 cut(s)	57
SsiI	CCGC	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	70, 186
TaiI	ACGT	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseI	GCWGC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	38
XmiI	GTMKAC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.