MD13G1094500.v1.1

Cytochrome b-c1 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0004343
Physical Location & Seq
Forward (+)
6656976 .. 6657958
983 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1094500.v1.1.491

Sequence Viewer

Length: 219 bp
ATGGGGAAGATTCCGGTGAAGATGAGAGCAGTGGTGTACGCGCTGTCGCCGTTTCAGCAGAAGGTGATGCCCGGCCTCTGGAAGGATTTCACCGGCAAGATCCACCACAAGGTCTCCGAGAACTGGCTCAGCGCCACCCTCCTCCTCACTCCTCTCGTCGCCACCTACTCGTATGTGCAGTATTACCAGGAGCAGGAGAAGTTGGAACACAGGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyt_b-c1_8

Protein Analysis

73

Amino Acids

8.49

Weight (kDa)

9.48

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyt_b-c1_8 PF10890 1 - 72 1.2e-36 Cytochrome b-c1 complex subunit 8
UcrQ PF02939 10 - 66 4.8e-06 UcrQ family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 41
AclWI GGATC 1 cut(s) 94
AfaI GTAC 2 cut(s) 38, 215
AfiI CCNNNNNNNGG 5 cut(s) 78, 82, 109, 123, 193
AjnI CCWGG 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 118
AlwI GGATC 1 cut(s) 94
AlwNI CAGNNNCTG 1 cut(s) 216
AoxI GGCC 1 cut(s) 73
Asp700I GAANNNNTTC 1 cut(s) 86
AspLEI GCGC 2 cut(s) 43, 134
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 3 cut(s) 28, 76, 82
BceAI ACGGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 188
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 118
BfoI RGCGCY 1 cut(s) 135
BlpI GCTNAGC 1 cut(s) 128
Bme1390I CCNGG 2 cut(s) 72, 188
BmrFI CCNGG 2 cut(s) 72, 188
BmsI GCATC 1 cut(s) 57
Bpu1102I GCTNAGC 1 cut(s) 128
BpuMI CCSGG 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 118
BsaWI WCCGGW 1 cut(s) 13
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 5 cut(s) 78, 82, 109, 123, 193
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 188
BseLI CCNNNNNNNGG 5 cut(s) 78, 82, 109, 123, 193
BseMII CTCAG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 3 cut(s) 131, 134, 141
BsgI GTGCAG 1 cut(s) 197
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 1 cut(s) 75
BsiSI CCGG 3 cut(s) 14, 72, 93
BslI CCNNNNNNNGG 5 cut(s) 78, 82, 109, 123, 193
BsmAI GTCTC 1 cut(s) 118
BsnI GGCC 1 cut(s) 75
Bso31I GGTCTC 1 cut(s) 118
Bsp143I GATC 1 cut(s) 99
Bsp1720I GCTNAGC 1 cut(s) 128
BspANI GGCC 1 cut(s) 75
BspCNI CTCAG 1 cut(s) 141
BspFNI CGCG 1 cut(s) 41
BspPI GGATC 1 cut(s) 94
BspTNI GGTCTC 1 cut(s) 118
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 92
BssMI GATC 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 188
BstDEI CTNAG 1 cut(s) 128
BstENI CCTNNNNNAGG 1 cut(s) 80
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 2 cut(s) 43, 134
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 2 cut(s) 70, 186
BstUI CGCG 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BsuRI GGCC 1 cut(s) 75
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
CaiI CAGNNNCTG 1 cut(s) 216
CfoI GCGC 2 cut(s) 43, 134
Cfr10I RCCGGY 1 cut(s) 92
Csp6I GTAC 2 cut(s) 37, 214
CviJI RGCY 2 cut(s) 75, 127
CviKI_1 RGCY 2 cut(s) 75, 127
CviQI GTAC 2 cut(s) 37, 214
DdeI CTNAG 1 cut(s) 128
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 118
EcoNI CCTNNNNNAGG 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 186
FaiI YATR 1 cut(s) 174
GlaI GCGC 2 cut(s) 42, 133
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 1 cut(s) 75
HapII CCGG 3 cut(s) 14, 72, 93
HhaI GCGC 2 cut(s) 43, 134
Hin6I GCGC 2 cut(s) 41, 132
HinP1I GCGC 2 cut(s) 41, 132
HinfI GANTC 1 cut(s) 10
HpaII CCGG 3 cut(s) 14, 72, 93
HphI GGTGA 3 cut(s) 28, 76, 82
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 55, 76
HpyCH4V TGCA 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
HpyF3I CTNAG 1 cut(s) 128
HspAI GCGC 2 cut(s) 41, 132
Kzo9I GATC 1 cut(s) 99
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 9 cut(s) 27, 64, 85, 106, 109, 173, 179, 196, 200
LweI GCATC 1 cut(s) 57
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 2 cut(s) 19, 31
MflI RGATCY 1 cut(s) 99
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 5 cut(s) 86, 149, 152, 155, 162
MroXI GAANNNNTTC 1 cut(s) 86
MspI CCGG 3 cut(s) 14, 72, 93
MspR9I CCNGG 2 cut(s) 72, 188
MvaI CCWGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 55
NciI CCSGG 1 cut(s) 72
NdeII GATC 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 216
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 2 cut(s) 38, 215
RsaNI GTAC 2 cut(s) 37, 214
Sau3AI GATC 1 cut(s) 99
ScrFI CCNGG 2 cut(s) 72, 188
SetI ASST 4 cut(s) 66, 114, 167, 215
SfaNI GCATC 1 cut(s) 57
StyD4I CCNGG 2 cut(s) 70, 186
TfiI GAWTC 1 cut(s) 10
TscAI CASTG 1 cut(s) 36
TspRI CASTG 1 cut(s) 36
XagI CCTNNNNNAGG 1 cut(s) 80
XmnI GAANNNNTTC 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.