FvH4_4g07960

Cytochrome b-c1 complex, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0004343
Physical Location & Seq
Forward (+)
7504866 .. 7506624
1759 bp
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UTR
Exon/CDS
Intron
FvH4_4g07960.t1

Sequence Viewer

Length: 219 bp
ATGGGGAAGGTATCGGTGAGGATGAAGGCAGTGGTCTACGGGCTGTCTCCCTTTCAGCAAAAGGTGATGCCTGATCTCTGGAAAGATCTGCCGACGAAGATCCACCACAAGATCTCCAAGAACTGGCACAACACTATCTTCACCCTCGGACCCATCGTCAGAATCTATGCGTATGTCCAGAACTACGAGGAAAAGGAGAAATTGGAGCATAGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyt_b-c1_8

Protein Analysis

73

Amino Acids

8.61

Weight (kDa)

9.79

Isoelectric Point (pI)

36.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyt_b-c1_8 PF10890 1 - 72 2.5e-31 Cytochrome b-c1 complex subunit 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 123
AccI GTMKAC 1 cut(s) 36
AclWI GGATC 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 123
AhdI GACNNNNNGTC 1 cut(s) 155
AloI GAACNNNNNNTCC 1 cut(s) 197
Alw26I GTCTC 1 cut(s) 51
AlwI GGATC 1 cut(s) 94
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 3 cut(s) 28, 76, 133
AvaII GGWCC 1 cut(s) 149
BccI CCATC 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 51
BglII AGATCT 2 cut(s) 85, 111
Bme18I GGWCC 1 cut(s) 149
BmeRI GACNNNNNGTC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 151
BmsI GCATC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 145
BsaXI ACNNNNNCTCC 3 cut(s) 98, 128, 197
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 51
Bsp143I GATC 4 cut(s) 73, 85, 99, 111
BspLI GGNNCC 1 cut(s) 151
BspPI GGATC 1 cut(s) 94
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 4 cut(s) 73, 85, 99, 111
BstF5I GGATG 1 cut(s) 27
BstKTI GATC 4 cut(s) 76, 88, 102, 114
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 4 cut(s) 73, 85, 99, 111
BstX2I RGATCY 3 cut(s) 85, 99, 111
BstYI RGATCY 3 cut(s) 85, 99, 111
BtsCI GGATG 1 cut(s) 27
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 149
CviJI RGCY 1 cut(s) 43
CviKI_1 RGCY 1 cut(s) 43
DpnI GATC 4 cut(s) 75, 87, 101, 113
DpnII GATC 4 cut(s) 73, 85, 99, 111
DriI GACNNNNNGTC 1 cut(s) 155
Eam1105I GACNNNNNGTC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 149
FaiI YATR 3 cut(s) 168, 174, 210
FblI GTMKAC 1 cut(s) 36
FokI GGATG 1 cut(s) 34
HinfI GANTC 1 cut(s) 162
HphI GGTGA 3 cut(s) 28, 76, 133
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 3 cut(s) 149, 161, 218
Hpy188III TCNNGA 2 cut(s) 79, 178
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 19
Kzo9I GATC 4 cut(s) 73, 85, 99, 111
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 4 cut(s) 64, 84, 109, 191
LweI GCATC 1 cut(s) 57
MalI GATC 4 cut(s) 75, 87, 101, 113
MboI GATC 4 cut(s) 73, 85, 99, 111
MboII GAAGA 2 cut(s) 109, 130
MflI RGATCY 3 cut(s) 85, 99, 111
MluCI AATT 1 cut(s) 200
MnlI CCTC 3 cut(s) 12, 155, 181
NdeII GATC 4 cut(s) 73, 85, 99, 111
NlaIV GGNNCC 1 cut(s) 151
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PfeI GAWTC 1 cut(s) 162
PflMI CCANNNNNTGG 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 149
PsuI RGATCY 3 cut(s) 85, 99, 111
Sau3AI GATC 4 cut(s) 73, 85, 99, 111
Sau96I GGNCC 1 cut(s) 149
SetI ASST 3 cut(s) 12, 66, 215
SfaNI GCATC 1 cut(s) 57
SgeI CNNG 9 cut(s) 52, 83, 91, 121, 130, 136, 158, 190, 199
SinI GGWCC 1 cut(s) 149
Sse9I AATT 1 cut(s) 200
TasI AATT 1 cut(s) 200
TfiI GAWTC 1 cut(s) 162
TscAI CASTG 1 cut(s) 36
TspDTI ATGAA 1 cut(s) 38
TspRI CASTG 1 cut(s) 36
Van91I CCANNNNNTGG 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.