RchiOBHm_Chr5g0073771

Cytochrome b-c1 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004343
Physical Location & Seq
Reverse (-)
79797915 .. 79799507
1593 bp
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UTR
Exon/CDS
Intron
PRQ34865

Sequence Viewer

Length: 219 bp
ATGGGGAAGCAACCGGTGAGGATGAAGGCGGTGGTATACGCGCTCTCGCCGTTTCAGCAGAAGGTGATGCCGGGTCTCTGGAAAGATCTGCCGACGAAGATCCACCACAAGATCTCCGAGAACTGGCACAGCGCTATCTTCCTCCTCGGACCCGTCGTCGGAACCTATGCGTATGTCCAGAACTACAAGGAAAAGGAGAAGTTGGAGCATAGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyt_b-c1_8

Protein Analysis

72

Amino Acids

8.44

Weight (kDa)

9.79

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyt_b-c1_8 PF10890 1 - 72 2.5e-38 Cytochrome b-c1 complex subunit 8
UcrQ PF02939 9 - 65 5.9e-06 UcrQ family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 36
AccII CGCG 1 cut(s) 41
AciI CCGC 1 cut(s) 29
AclWI GGATC 1 cut(s) 94
AfeI AGCGCT 1 cut(s) 133
AfiI CCNNNNNNNGG 2 cut(s) 123, 158
AgeI ACCGGT 1 cut(s) 13
AhdI GACNNNNNGTC 1 cut(s) 155
AloI GAACNNNNNNTCC 1 cut(s) 197
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 1 cut(s) 94
Aor51HI AGCGCT 1 cut(s) 133
AsiGI ACCGGT 1 cut(s) 13
AspLEI GCGC 2 cut(s) 43, 134
AspS9I GGNCC 1 cut(s) 149
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 2 cut(s) 28, 76
AvaII GGWCC 1 cut(s) 149
BceAI ACGGC 1 cut(s) 34
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 135
BglII AGATCT 2 cut(s) 85, 111
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 149
BmeRI GACNNNNNGTC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 151, 163
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 57
BpuMI CCSGG 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 145
BsaWI WCCGGW 1 cut(s) 13
BsaXI ACNNNNNCTCC 3 cut(s) 98, 128, 197
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 158
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 1 cut(s) 27
BseLI CCNNNNNNNGG 2 cut(s) 123, 158
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 134
Bsh1236I CGCG 1 cut(s) 41
BshTI ACCGGT 1 cut(s) 13
BsiSI CCGG 2 cut(s) 14, 71
BslI CCNNNNNNNGG 2 cut(s) 123, 158
BsmAI GTCTC 1 cut(s) 80
Bso31I GGTCTC 1 cut(s) 80
Bsp143I GATC 3 cut(s) 85, 99, 111
BspACI CCGC 1 cut(s) 29
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 2 cut(s) 151, 163
BspPI GGATC 1 cut(s) 94
BspTNI GGTCTC 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 13
BsrI ACTGG 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 3 cut(s) 85, 99, 111
BssNAI GTATAC 1 cut(s) 37
Bst1107I GTATAC 1 cut(s) 37
BstF5I GGATG 1 cut(s) 27
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 2 cut(s) 43, 134
BstKTI GATC 3 cut(s) 88, 102, 114
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 3 cut(s) 85, 99, 111
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 70
BstUI CGCG 1 cut(s) 41
BstX2I RGATCY 3 cut(s) 85, 99, 111
BstYI RGATCY 3 cut(s) 85, 99, 111
BstZ17I GTATAC 1 cut(s) 37
BtsCI GGATG 1 cut(s) 27
CfoI GCGC 2 cut(s) 43, 134
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 149
CspAI ACCGGT 1 cut(s) 13
DpnI GATC 3 cut(s) 87, 101, 113
DpnII GATC 3 cut(s) 85, 99, 111
DriI GACNNNNNGTC 1 cut(s) 155
Eam1105I GACNNNNNGTC 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 149
Eco47III AGCGCT 1 cut(s) 133
FaiI YATR 4 cut(s) 37, 168, 174, 210
FblI GTMKAC 1 cut(s) 36
FokI GGATG 1 cut(s) 34
GlaI GCGC 2 cut(s) 42, 133
HaeII RGCGCY 1 cut(s) 135
HapII CCGG 2 cut(s) 14, 71
HhaI GCGC 2 cut(s) 43, 134
Hin6I GCGC 2 cut(s) 41, 132
HinP1I GCGC 2 cut(s) 41, 132
HpaII CCGG 2 cut(s) 14, 71
HphI GGTGA 2 cut(s) 28, 76
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 4 cut(s) 118, 149, 161, 218
Hpy188III TCNNGA 2 cut(s) 79, 178
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 3 cut(s) 97, 158, 161
HpyAV CCTTC 2 cut(s) 19, 55
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
HspAI GCGC 2 cut(s) 41, 132
Kzo9I GATC 3 cut(s) 85, 99, 111
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 5 cut(s) 27, 64, 84, 109, 191
LweI GCATC 1 cut(s) 57
MalI GATC 3 cut(s) 87, 101, 113
MboI GATC 3 cut(s) 85, 99, 111
MboII GAAGA 2 cut(s) 109, 130
MflI RGATCY 3 cut(s) 85, 99, 111
MmeI TCCRAC 2 cut(s) 139, 183
MnlI CCTC 3 cut(s) 12, 152, 155
MspI CCGG 2 cut(s) 14, 71
MspR9I CCNGG 1 cut(s) 72
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 55
NciI CCSGG 1 cut(s) 72
NdeII GATC 3 cut(s) 85, 99, 111
NlaIV GGNNCC 2 cut(s) 151, 163
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PinAI ACCGGT 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 151, 163
PspPI GGNCC 1 cut(s) 149
PsuI RGATCY 3 cut(s) 85, 99, 111
Sau3AI GATC 3 cut(s) 85, 99, 111
Sau96I GGNCC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 72
SetI ASST 3 cut(s) 66, 167, 215
SfaNI GCATC 1 cut(s) 57
SinI GGWCC 1 cut(s) 149
SsiI CCGC 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.