Rmu_co8104398.1_g000001

Cytochrome b-c1 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8104398.1
OG0004343
Physical Location & Seq
Forward (+)
1 .. 518
518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8104398.1_g000001.1.cds

Sequence Viewer

Length: 228 bp
accaaaaaattaggtcttggaaatttgggagagaagaagaagaggagagagaaaatggggaagcaaccggtgaagatgagggcggtggtgtacgcgctgtcgccgtttcagcagaaggtgatgcccggactctggaaggaccttccggccaagctccaccacaaggtctccgagaactggctcagcgccactctcctcatcgctcctctcgttgccgtccacacgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyt_b-c1_8

Protein Analysis

75

Amino Acids

8.44

Weight (kDa)

10.51

Isoelectric Point (pI)

64.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 95
AciI CCGC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 1 cut(s) 22
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 3 cut(s) 132, 163, 177
AflIII ACRYGT 1 cut(s) 222
AgeI ACCGGT 1 cut(s) 67
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 172
AoxI GGCC 1 cut(s) 147
ApoI RAATTY 1 cut(s) 22
AsiGI ACCGGT 1 cut(s) 67
AspLEI GCGC 2 cut(s) 97, 188
AspS9I GGNCC 1 cut(s) 139
AsuC2I CCSGG 1 cut(s) 126
AsuHPI GGTGA 2 cut(s) 82, 130
AvaII GGWCC 1 cut(s) 139
BceAI ACGGC 2 cut(s) 88, 200
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 172
BfoI RGCGCY 1 cut(s) 189
BlpI GCTNAGC 1 cut(s) 182
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 1 cut(s) 111
Bpu1102I GCTNAGC 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 126
BsaAI YACGTR 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 172
BsaWI WCCGGW 1 cut(s) 67
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 163, 177
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 182
BseLI CCNNNNNNNGG 3 cut(s) 132, 163, 177
BseMII CTCAG 1 cut(s) 196
BseNI ACTGG 1 cut(s) 182
BseRI GAGGAG 3 cut(s) 58, 185, 195
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 1 cut(s) 149
BshTI ACCGGT 1 cut(s) 67
BsiSI CCGG 3 cut(s) 68, 126, 146
BslI CCNNNNNNNGG 3 cut(s) 132, 163, 177
BsmAI GTCTC 1 cut(s) 172
BsnI GGCC 1 cut(s) 149
Bso31I GGTCTC 1 cut(s) 172
Bsp1720I GCTNAGC 1 cut(s) 182
BspACI CCGC 1 cut(s) 83
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 1 cut(s) 195
BspFNI CGCG 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 67
BsrI ACTGG 1 cut(s) 182
BssAI RCCGGY 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 35
BstBAI YACGTR 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 182
BstFNI CGCG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 2 cut(s) 97, 188
BstMAI GTCTC 1 cut(s) 172
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstSCI CCNGG 1 cut(s) 124
BstUI CGCG 1 cut(s) 95
BsuRI GGCC 1 cut(s) 149
BtgZI GCGATG 1 cut(s) 184
CfoI GCGC 2 cut(s) 97, 188
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 91
CspAI ACCGGT 1 cut(s) 67
CviJI RGCY 3 cut(s) 149, 154, 181
CviKI_1 RGCY 3 cut(s) 149, 154, 181
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 1 cut(s) 182
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco31I GGTCTC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 139
GlaI GCGC 2 cut(s) 96, 187
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 1 cut(s) 149
HapII CCGG 3 cut(s) 68, 126, 146
HhaI GCGC 2 cut(s) 97, 188
Hin6I GCGC 2 cut(s) 95, 186
HinP1I GCGC 2 cut(s) 95, 186
HinfI GANTC 1 cut(s) 129
HpaII CCGG 3 cut(s) 68, 126, 146
HphI GGTGA 2 cut(s) 82, 130
Hpy166II GTNNAC 2 cut(s) 91, 220
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 2 cut(s) 91, 220
HpyAV CCTTC 3 cut(s) 109, 130, 152
HpyCH4IV ACGT 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 1 cut(s) 182
HpySE526I ACGT 1 cut(s) 224
HspAI GCGC 2 cut(s) 95, 186
LmnI GCTCC 2 cut(s) 159, 208
LpnPI CCDG 5 cut(s) 81, 118, 139, 159, 163
LweI GCATC 1 cut(s) 111
MaeII ACGT 1 cut(s) 224
MboII GAAGA 4 cut(s) 46, 49, 52, 85
MluCI AATT 2 cut(s) 8, 22
MlyI GAGTC 1 cut(s) 123
MnlI CCTC 4 cut(s) 36, 72, 206, 216
MspI CCGG 3 cut(s) 68, 126, 146
MspR9I CCNGG 1 cut(s) 126
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 109
NciI CCSGG 1 cut(s) 126
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PinAI ACCGGT 1 cut(s) 67
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
Ppu21I YACGTR 1 cut(s) 225
PpuMI RGGWCCY 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 139
PspPI GGNCC 1 cut(s) 139
PspPPI RGGWCCY 1 cut(s) 139
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
Sau96I GGNCC 1 cut(s) 139
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 1 cut(s) 126
SetI ASST 6 cut(s) 16, 120, 144, 156, 168, 227
SfaNI GCATC 1 cut(s) 111
SinI GGWCC 1 cut(s) 139
Sse9I AATT 2 cut(s) 8, 22
SsiI CCGC 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 124
TaiI ACGT 1 cut(s) 227
TasI AATT 2 cut(s) 8, 22
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.