Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003945

Physical Location & Seq

Genomic Coordinates Reverse (-)

4402263 .. 4402766

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05081.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGAGAACAGAGGTATGGCTCATTCTAAAGTGACGTATACGATTGTAATTGATGTTTTGGTTCGATATGATGATATGGAAAGAGCGTTTCATGTGTTCTCCTCTAAGGAGAAGTCTGGTCTGCCAAGTGATGTCATATTTAATATAATGATTCATGGCTACTACAAAGAAGGTAGCTCTTACAGGGCATTGAGGTTGGTCAAAGAAATGAGAAAGAAGGGAATGGTTCTGAATGTGGCTAGTTACAGTTCGACCATTGGAGTTCTTTGTAATGATGGGAAATGGGACGAGGCTGAAATGCTACTTAAAGACATGATGGAGTCAGATTTGAAACCATCAGTTTCTTTGTATAATATAACCTCTAGAGCGAAAAATGATACACCGGTGATGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:1900864 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

132

Amino Acids

14.94

Weight (kDa)

7.82

Isoelectric Point (pI)

23.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	42 - 91	6.4e-12	PPR repeat family
PPR	PF01535	45 - 75	4.9e-07	PPR repeat
PPR_3	PF13812	65 - 119	3.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	73 - 105	6.3e-06	PPR repeat
PPR_2	PF13041	78 - 119	6.8e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003945)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05081
malus_domestica	MD10G1101700.v1.1
pyrus_communis	pycom09g04910 pycom15g38900
rosa_chinensis	RchiOBHm_Chr2g0123831 RchiOBHm_Chr4g0385181 RchiOBHm_Chr5g0064611
rosa_laevigata	RLG00000008165 RLG00000018415 RLG00000019614
rosa_multiflora	Rmu_sc0000571.1_g000023 Rmu_sc0001609.1_g000009 Rmu_sc0002893.1_g000021 Rmu_sc0003314.1_g000036 Rmu_sc0004010.1_g000014 Rmu_sc0008955.1_g000004 Rmu_sc0026245.1_g000002 Rmu_sc0027612.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379810 Rroxscaffold_7G00189080
rosa_rugosa	Rorug03G0223000 Rorug06G0045100
rosa_samantha	Rh1CG355700 Rh1DG373200 Rh2BG315600 Rh3BG307100 Rh3CG368600 Rh3DG369600 Rh6BG404300 Rh6DG233700 Rh6DG396800 Rh6DG396900 Rh7AG211300 Rh7CG234500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	394
AccI	GTMKAC	1 cut(s)	38
AgeI	ACCGGT	1 cut(s)	382
AgsI	TTSAA	1 cut(s)	331
AluBI	AGCT	1 cut(s)	177
AluI	AGCT	1 cut(s)	177
AsiGI	ACCGGT	1 cut(s)	382
BaeI	ACNNNNGTAYC	1 cut(s)	369
BccI	CCATC	3 cut(s)	269, 310, 343
BfaI	CTAG	2 cut(s)	240, 363
BsaWI	WCCGGW	1 cut(s)	382
Bse118I	RCCGGY	1 cut(s)	382
BseRI	GAGGAG	1 cut(s)	91
BshTI	ACCGGT	1 cut(s)	382
BsiSI	CCGG	1 cut(s)	383
BslFI	GGGAC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	382
BssAI	RCCGGY	1 cut(s)	382
BssNAI	GTATAC	1 cut(s)	39
Bst1107I	GTATAC	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	248
BstDEI	CTNAG	1 cut(s)	105
BstZ17I	GTATAC	1 cut(s)	39
Cfr10I	RCCGGY	1 cut(s)	382
CspAI	ACCGGT	1 cut(s)	382
CviAII	CATG	3 cut(s)	92, 155, 313
CviJI	RGCY	5 cut(s)	20, 159, 177, 239, 293
CviKI_1	RGCY	5 cut(s)	20, 159, 177, 239, 293
DdeI	CTNAG	1 cut(s)	105
FaeI	CATG	3 cut(s)	95, 158, 316
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	3 cut(s)	91, 154, 312
FblI	GTMKAC	1 cut(s)	38
FspBI	CTAG	2 cut(s)	240, 363
HapII	CCGG	1 cut(s)	383
Hin1II	CATG	3 cut(s)	95, 158, 316
HinfI	GANTC	2 cut(s)	151, 320
HpaII	CCGG	1 cut(s)	383
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	2 cut(s)	231, 325
Hpy188III	TCNNGA	1 cut(s)	363
Hpy8I	GTNNAC	1 cut(s)	39
HpyAV	CCTTC	2 cut(s)	164, 211
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	1 cut(s)	35
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	3 cut(s)	95, 158, 316
LpnPI	CCDG	2 cut(s)	102, 169
MaeI	CTAG	2 cut(s)	240, 363
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	31, 242
MluCI	AATT	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	5 cut(s)	5, 112, 186, 283, 370
MseI	TTAA	2 cut(s)	141, 306
MspI	CCGG	1 cut(s)	383
NlaIII	CATG	3 cut(s)	95, 158, 316
NmuCI	GTSAC	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	151
PinAI	ACCGGT	1 cut(s)	382
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PsiI	TTATAA	1 cut(s)	394
SaqAI	TTAA	2 cut(s)	141, 306
SchI	GAGTC	1 cut(s)	329
SetI	ASST	6 cut(s)	16, 38, 175, 179, 197, 362
SgeI	CNNG	9 cut(s)	104, 129, 138, 167, 196, 252, 301, 325, 375
SgrAI	CRCCGGYG	1 cut(s)	382
Sse9I	AATT	1 cut(s)	48
SspMI	CTAG	2 cut(s)	240, 363
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	2 cut(s)	64, 251
TasI	AATT	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	2 cut(s)	141, 306
Tru9I	TTAA	2 cut(s)	141, 306
TseFI	GTSAC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	2 cut(s)	80, 143
XbaI	TCTAGA	1 cut(s)	362
XmiI	GTMKAC	1 cut(s)	38
XspI	CTAG	2 cut(s)	240, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.