Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g05081 |
| malus_domestica | MD10G1101700.v1.1 |
| pyrus_communis | pycom09g04910 pycom15g38900 |
| rosa_chinensis | RchiOBHm_Chr2g0123831 RchiOBHm_Chr4g0385181 RchiOBHm_Chr5g0064611 |
| rosa_laevigata | RLG00000008165 RLG00000018415 RLG00000019614 |
| rosa_multiflora | Rmu_sc0000571.1_g000023 Rmu_sc0001609.1_g000009 Rmu_sc0002893.1_g000021 Rmu_sc0003314.1_g000036 Rmu_sc0004010.1_g000014 Rmu_sc0008955.1_g000004 Rmu_sc0026245.1_g000002 Rmu_sc0027612.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00379810 Rroxscaffold_7G00189080 |
| rosa_rugosa | Rorug03G0223000 Rorug06G0045100 |
| rosa_samantha | Rh1CG355700 Rh1DG373200 Rh2BG315600 Rh3BG307100 Rh3CG368600 Rh3DG369600 Rh6BG404300 Rh6DG233700 Rh6DG396800 Rh6DG396900 Rh7AG211300 Rh7CG234500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 86 |
| AciI | CCGC | 2 cut(s) | 319, 337 |
| AcsI | RAATTY | 1 cut(s) | 387 |
| AflIII | ACRYGT | 1 cut(s) | 84 |
| AgsI | TTSAA | 2 cut(s) | 70, 115 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 71, 103 |
| Alw26I | GTCTC | 2 cut(s) | 182, 338 |
| ApoI | RAATTY | 1 cut(s) | 387 |
| AseI | ATTAAT | 1 cut(s) | 156 |
| AsuHPI | GGTGA | 3 cut(s) | 163, 253, 281 |
| BccI | CCATC | 3 cut(s) | 70, 100, 319 |
| BcoDI | GTCTC | 2 cut(s) | 182, 338 |
| BfaI | CTAG | 1 cut(s) | 383 |
| BmiI | GGNNCC | 1 cut(s) | 126 |
| BmsI | GCATC | 2 cut(s) | 43, 306 |
| BpuEI | CTTGAG | 1 cut(s) | 224 |
| Bsa29I | ATCGAT | 1 cut(s) | 104 |
| BsaAI | YACGTR | 1 cut(s) | 36 |
| Bse1I | ACTGG | 1 cut(s) | 196 |
| BseCI | ATCGAT | 1 cut(s) | 104 |
| BseGI | GGATG | 4 cut(s) | 81, 85, 186, 330 |
| BseNI | ACTGG | 1 cut(s) | 196 |
| BseRI | GAGGAG | 2 cut(s) | 221, 326 |
| Bsh1236I | CGCG | 1 cut(s) | 86 |
| BshVI | ATCGAT | 1 cut(s) | 104 |
| BsmAI | GTCTC | 2 cut(s) | 182, 338 |
| Bsp143I | GATC | 1 cut(s) | 101 |
| BspACI | CCGC | 2 cut(s) | 319, 337 |
| BspDI | ATCGAT | 1 cut(s) | 104 |
| BspFNI | CGCG | 1 cut(s) | 86 |
| BspLI | GGNNCC | 1 cut(s) | 126 |
| BsrI | ACTGG | 1 cut(s) | 196 |
| BssMI | GATC | 1 cut(s) | 101 |
| Bst6I | CTCTTC | 1 cut(s) | 65 |
| BstBAI | YACGTR | 1 cut(s) | 36 |
| BstF5I | GGATG | 4 cut(s) | 81, 85, 186, 330 |
| BstFNI | CGCG | 1 cut(s) | 86 |
| BstKTI | GATC | 1 cut(s) | 104 |
| BstMAI | GTCTC | 2 cut(s) | 182, 338 |
| BstMBI | GATC | 1 cut(s) | 101 |
| BstNSI | RCATGY | 1 cut(s) | 343 |
| BstSNI | TACGTA | 1 cut(s) | 36 |
| BstUI | CGCG | 1 cut(s) | 86 |
| Bsu15I | ATCGAT | 1 cut(s) | 104 |
| BsuTUI | ATCGAT | 1 cut(s) | 104 |
| BtsCI | GGATG | 4 cut(s) | 81, 85, 186, 330 |
| ClaI | ATCGAT | 1 cut(s) | 104 |
| CseI | GACGC | 1 cut(s) | 92 |
| CviAII | CATG | 2 cut(s) | 340, 372 |
| CviJI | RGCY | 3 cut(s) | 127, 329, 382 |
| CviKI_1 | RGCY | 3 cut(s) | 127, 329, 382 |
| DpnI | GATC | 1 cut(s) | 103 |
| DpnII | GATC | 1 cut(s) | 101 |
| Eam1104I | CTCTTC | 1 cut(s) | 65 |
| EarI | CTCTTC | 1 cut(s) | 65 |
| Eco105I | TACGTA | 1 cut(s) | 36 |
| FaeI | CATG | 2 cut(s) | 343, 375 |
| FaiI | YATR | 5 cut(s) | 39, 144, 341, 353, 373 |
| FatI | CATG | 2 cut(s) | 339, 371 |
| FokI | GGATG | 4 cut(s) | 88, 92, 193, 337 |
| FspBI | CTAG | 1 cut(s) | 383 |
| HgaI | GACGC | 1 cut(s) | 92 |
| Hin1II | CATG | 2 cut(s) | 343, 375 |
| HinfI | GANTC | 1 cut(s) | 199 |
| HphI | GGTGA | 3 cut(s) | 163, 253, 281 |
| Hpy188I | TCNGA | 2 cut(s) | 92, 198 |
| Hpy188III | TCNNGA | 3 cut(s) | 170, 203, 233 |
| HpyAV | CCTTC | 4 cut(s) | 109, 167, 214, 272 |
| HpyCH4IV | ACGT | 2 cut(s) | 35, 44 |
| HpyCH4V | TGCA | 2 cut(s) | 273, 307 |
| HpySE526I | ACGT | 2 cut(s) | 35, 44 |
| Hsp92II | CATG | 2 cut(s) | 343, 375 |
| Kzo9I | GATC | 1 cut(s) | 101 |
| LmnI | GCTCC | 1 cut(s) | 124 |
| LpnPI | CCDG | 2 cut(s) | 177, 246 |
| LweI | GCATC | 2 cut(s) | 43, 306 |
| MaeI | CTAG | 1 cut(s) | 383 |
| MaeII | ACGT | 2 cut(s) | 35, 44 |
| MaeIII | GTNAC | 3 cut(s) | 31, 241, 345 |
| MalI | GATC | 1 cut(s) | 103 |
| MboI | GATC | 1 cut(s) | 101 |
| MboII | GAAGA | 1 cut(s) | 82 |
| MluCI | AATT | 3 cut(s) | 130, 283, 387 |
| MluI | ACGCGT | 1 cut(s) | 84 |
| MnlI | CCTC | 6 cut(s) | 66, 171, 199, 232, 304, 315 |
| MseI | TTAA | 1 cut(s) | 156 |
| MvnI | CGCG | 1 cut(s) | 86 |
| NdeII | GATC | 1 cut(s) | 101 |
| NlaIII | CATG | 2 cut(s) | 343, 375 |
| NlaIV | GGNNCC | 1 cut(s) | 126 |
| NmuCI | GTSAC | 2 cut(s) | 241, 345 |
| NspI | RCATGY | 1 cut(s) | 343 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 41 |
| PfeI | GAWTC | 1 cut(s) | 199 |
| Ppu21I | YACGTR | 1 cut(s) | 36 |
| PshBI | ATTAAT | 1 cut(s) | 156 |
| PspN4I | GGNNCC | 1 cut(s) | 126 |
| SaqAI | TTAA | 1 cut(s) | 156 |
| Sau3AI | GATC | 1 cut(s) | 101 |
| SetI | ASST | 4 cut(s) | 38, 47, 243, 283 |
| SfaNI | GCATC | 2 cut(s) | 43, 306 |
| SmlI | CTYRAG | 1 cut(s) | 203 |
| SmoI | CTYRAG | 1 cut(s) | 203 |
| SnaBI | TACGTA | 1 cut(s) | 36 |
| Sse9I | AATT | 3 cut(s) | 130, 283, 387 |
| SsiI | CCGC | 2 cut(s) | 319, 337 |
| SspMI | CTAG | 1 cut(s) | 383 |
| TaiI | ACGT | 2 cut(s) | 38, 47 |
| TaqI | TCGA | 2 cut(s) | 104, 169 |
| TasI | AATT | 3 cut(s) | 130, 283, 387 |
| TfiI | GAWTC | 1 cut(s) | 199 |
| Tru1I | TTAA | 1 cut(s) | 156 |
| Tru9I | TTAA | 1 cut(s) | 156 |
| TseFI | GTSAC | 2 cut(s) | 241, 345 |
| Tsp45I | GTSAC | 2 cut(s) | 241, 345 |
| TspDTI | ATGAA | 2 cut(s) | 197, 227 |
| VspI | ATTAAT | 1 cut(s) | 156 |
| XapI | RAATTY | 1 cut(s) | 387 |
| XceI | RCATGY | 1 cut(s) | 343 |
| XspI | CTAG | 1 cut(s) | 383 |