Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003945

Physical Location & Seq

Genomic Coordinates Forward (+)

37100523 .. 37100891

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49610

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGTTGATGCGTATGAGCTGTTGAAGGAGCTGAGGAGGAAGGGTTGTGAGTCCAATGCGGGTTCGTATACGACTATGATTCAGGTACTTTGCGGGCAGGAGAAGATGGAGGAGGCGATGAGGGTGTTTGTGGAGATGGAGAAGAGTGGTTGTGAGATTGTGAGGAGTTATGAGATTTTGGAGAGTATAATAAGGAAAGGGTTTACGCCGAGTCAGATGACTTACTTGCAGATTATGTTGGCTCATGAGAAGAAGGAAGACTTTGAGGAGTGTATAATTGATGGGGCAGATGAGGAAGATTGGTTGCATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

104

Amino Acids

12.08

Weight (kDa)

4.61

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	2 - 31	5.3e-06	PPR repeat family
PPR_3	PF13812	7 - 52	3.7e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	14 - 47	5.9e-08	PPR repeat
PPR_2	PF13041	20 - 52	4e-09	PPR repeat family
PPR	PF01535	22 - 51	5.5e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003945)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05081
malus_domestica	MD10G1101700.v1.1
pyrus_communis	pycom09g04910 pycom15g38900
rosa_chinensis	RchiOBHm_Chr2g0123831 RchiOBHm_Chr4g0385181 RchiOBHm_Chr5g0064611
rosa_laevigata	RLG00000008165 RLG00000018415 RLG00000019614
rosa_multiflora	Rmu_sc0000571.1_g000023 Rmu_sc0001609.1_g000009 Rmu_sc0002893.1_g000021 Rmu_sc0003314.1_g000036 Rmu_sc0004010.1_g000014 Rmu_sc0008955.1_g000004 Rmu_sc0026245.1_g000002 Rmu_sc0027612.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379810 Rroxscaffold_7G00189080
rosa_rugosa	Rorug03G0223000 Rorug06G0045100
rosa_samantha	Rh1CG355700 Rh1DG373200 Rh2BG315600 Rh3BG307100 Rh3CG368600 Rh3DG369600 Rh6BG404300 Rh6DG233700 Rh6DG396800 Rh6DG396900 Rh7AG211300 Rh7CG234500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	68
AciI	CCGC	2 cut(s)	59, 93
AfaI	GTAC	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	25
AluBI	AGCT	2 cut(s)	19, 31
AluI	AGCT	2 cut(s)	19, 31
BbsI	GAAGAC	1 cut(s)	264
BbvCI	CCTCAGC	1 cut(s)	32
BccI	CCATC	3 cut(s)	100, 130, 275
BpiI	GAAGAC	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 58
BseMII	CTCAG	1 cut(s)	23
BseRI	GAGGAG	4 cut(s)	49, 125, 178, 281
BspACI	CCGC	2 cut(s)	59, 93
BspCNI	CTCAG	1 cut(s)	24
BspHI	TCATGA	1 cut(s)	244
BssNAI	GTATAC	1 cut(s)	69
Bst1107I	GTATAC	1 cut(s)	69
Bst6I	CTCTTC	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	95, 309
BstDEI	CTNAG	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	311
BstV2I	GAAGAC	1 cut(s)	264
BstZ17I	GTATAC	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	131
Cac8I	GCNNGC	2 cut(s)	95, 309
CciI	TCATGA	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	2 cut(s)	245, 308
CviJI	RGCY	3 cut(s)	19, 31, 242
CviKI_1	RGCY	3 cut(s)	19, 31, 242
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	1 cut(s)	32
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
FaeI	CATG	2 cut(s)	248, 311
FaiI	YATR	9 cut(s)	15, 69, 77, 171, 188, 236, 246, 275, 309
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FatI	CATG	2 cut(s)	244, 307
FauI	CCCGC	2 cut(s)	52, 86
FblI	GTMKAC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	248, 311
HinfI	GANTC	3 cut(s)	50, 79, 211
Hpy166II	GTNNAC	2 cut(s)	69, 204
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	2 cut(s)	69, 204
HpyAV	CCTTC	3 cut(s)	19, 34, 247
HpyCH4V	TGCA	2 cut(s)	229, 307
HpyF3I	CTNAG	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	248, 311
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	2 cut(s)	68, 83
MboII	GAAGA	5 cut(s)	115, 154, 262, 269, 308
MluCI	AATT	1 cut(s)	276
MlyI	GAGTC	2 cut(s)	59, 220
MnlI	CCTC	8 cut(s)	27, 30, 103, 106, 114, 156, 259, 286
NlaIII	CATG	2 cut(s)	248, 311
NmeAIII	GCCGAG	1 cut(s)	234
NspI	RCATGY	1 cut(s)	311
PaeI	GCATGC	1 cut(s)	311
PagI	TCATGA	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	79
PleI	GAGTC	2 cut(s)	58, 219
PpsI	GAGTC	2 cut(s)	58, 219
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SchI	GAGTC	2 cut(s)	59, 220
SetI	ASST	3 cut(s)	21, 33, 87
SgeI	CNNG	7 cut(s)	72, 95, 106, 110, 222, 238, 257
SphI	GCATGC	1 cut(s)	311
Sse9I	AATT	1 cut(s)	276
SsiI	CCGC	2 cut(s)	59, 93
TasI	AATT	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	79
XceI	RCATGY	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.