Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027612.1

Orthogroup ID

OG0003945

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 370

Gene Structure 370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027612.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 370 bp

agaagaggctaagaggttctgggatgaggttatttggccctcacagatccatgacaattttgtatacgcagccatcatcaaagggatttgccattcaggaaattttgatgaggcatgtcatttcctctacgaacttgtagactctggggtctgtccgaatatattcagttacaacattgtgatcgacactgcttacaaactaggtctgaagaaagaggcatatgaagttgtgagagagatgagaagaaatgggctggctccggattctgtaacttggaggattcttgacaagttacacagcaactcaagaaaacaatatggggatgatgaggcttcaaatttgcaattcgtaagtggaccgcatggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

122

Amino Acids

14.0

Weight (kDa)

5.46

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003945)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05081
malus_domestica	MD10G1101700.v1.1
pyrus_communis	pycom09g04910 pycom15g38900
rosa_chinensis	RchiOBHm_Chr2g0123831 RchiOBHm_Chr4g0385181 RchiOBHm_Chr5g0064611
rosa_laevigata	RLG00000008165 RLG00000018415 RLG00000019614
rosa_multiflora	Rmu_sc0000571.1_g000023 Rmu_sc0001609.1_g000009 Rmu_sc0002893.1_g000021 Rmu_sc0003314.1_g000036 Rmu_sc0004010.1_g000014 Rmu_sc0008955.1_g000004 Rmu_sc0026245.1_g000002 Rmu_sc0027612.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379810 Rroxscaffold_7G00189080
rosa_rugosa	Rorug03G0223000 Rorug06G0045100
rosa_samantha	Rh1CG355700 Rh1DG373200 Rh2BG315600 Rh3BG307100 Rh3CG368600 Rh3DG369600 Rh6BG404300 Rh6DG233700 Rh6DG396800 Rh6DG396900 Rh7AG211300 Rh7CG234500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	147
AccI	GTMKAC	2 cut(s)	64, 139
AccIII	TCCGGA	1 cut(s)	260
AciI	CCGC	1 cut(s)	360
AclWI	GGATC	1 cut(s)	41
AcsI	RAATTY	2 cut(s)	101, 338
AcuI	CTGAAG	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	337
AlwI	GGATC	1 cut(s)	41
Aor13HI	TCCGGA	1 cut(s)	260
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	69
ApoI	RAATTY	2 cut(s)	101, 338
Asp700I	GAANNNNTTC	1 cut(s)	162
AspS9I	GGNCC	2 cut(s)	37, 357
AvaII	GGWCC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	81
BccI	CCATC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	201
BisI	GCNGC	1 cut(s)	70
BlsI	GCNGC	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	357
BmgT120I	GGNCC	2 cut(s)	37, 357
BmiI	GGNNCC	1 cut(s)	259
BpuEI	CTTGAG	1 cut(s)	290
BsaWI	WCCGGW	1 cut(s)	260
BseAI	TCCGGA	1 cut(s)	260
BseGI	GGATG	2 cut(s)	29, 329
BseXI	GCAGC	1 cut(s)	81
BshFI	GGCC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	261
BsnI	GGCC	1 cut(s)	38
Bsp13I	TCCGGA	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	46, 181
BspACI	CCGC	1 cut(s)	360
BspANI	GGCC	1 cut(s)	38
BspEI	TCCGGA	1 cut(s)	260
BspLI	GGNNCC	1 cut(s)	259
BspPI	GGATC	1 cut(s)	41
BssMI	GATC	2 cut(s)	46, 181
BssNAI	GTATAC	1 cut(s)	65
Bst1107I	GTATAC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	29, 329
BstKTI	GATC	2 cut(s)	49, 184
BstMBI	GATC	2 cut(s)	46, 181
BstNSI	RCATGY	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BstZ17I	GTATAC	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	29, 329
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	256
Cfr13I	GGNCC	2 cut(s)	37, 357
CviAII	CATG	3 cut(s)	51, 115, 363
CviJI	RGCY	6 cut(s)	9, 38, 72, 254, 258, 333
CviKI_1	RGCY	6 cut(s)	9, 38, 72, 254, 258, 333
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	2 cut(s)	48, 183
DpnII	GATC	2 cut(s)	46, 181
DrdI	GACNNNNNNGTC	1 cut(s)	147
DseDI	GACNNNNNNGTC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	228
FaeI	CATG	3 cut(s)	54, 118, 366
FaiI	YATR	8 cut(s)	52, 65, 116, 162, 221, 223, 319, 364
FatI	CATG	3 cut(s)	50, 114, 362
FauNDI	CATATG	1 cut(s)	221
FblI	GTMKAC	2 cut(s)	64, 139
Fnu4HI	GCNGC	1 cut(s)	70
FokI	GGATG	2 cut(s)	36, 336
Fsp4HI	GCNGC	1 cut(s)	70
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	1 cut(s)	261
Hin1II	CATG	3 cut(s)	54, 118, 366
HinfI	GANTC	3 cut(s)	141, 264, 281
HpaII	CCGG	1 cut(s)	261
Hpy166II	GTNNAC	3 cut(s)	65, 140, 357
Hpy188I	TCNGA	2 cut(s)	157, 208
Hpy188III	TCNNGA	4 cut(s)	97, 261, 285, 307
Hpy8I	GTNNAC	3 cut(s)	65, 140, 357
HpyCH4V	TGCA	1 cut(s)	344
HpyF3I	CTNAG	1 cut(s)	10
Hsp92II	CATG	3 cut(s)	54, 118, 366
Kpn2I	TCCGGA	1 cut(s)	260
Kzo9I	GATC	2 cut(s)	46, 181
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	5 cut(s)	5, 82, 130, 240, 274
Lsp1109I	GCAGC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	201
MaeIII	GTNAC	3 cut(s)	168, 269, 292
MalI	GATC	2 cut(s)	48, 183
MboI	GATC	2 cut(s)	46, 181
MboII	GAAGA	3 cut(s)	15, 221, 256
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	4 cut(s)	56, 101, 338, 345
MlyI	GAGTC	1 cut(s)	135
MnlI	CCTC	8 cut(s)	7, 20, 50, 104, 135, 209, 271, 323
MroI	TCCGGA	1 cut(s)	260
MroXI	GAANNNNTTC	1 cut(s)	162
MspI	CCGG	1 cut(s)	261
NdeI	CATATG	1 cut(s)	221
NdeII	GATC	2 cut(s)	46, 181
NlaIII	CATG	3 cut(s)	54, 118, 366
NlaIV	GGNNCC	1 cut(s)	259
NspI	RCATGY	1 cut(s)	118
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	264, 281
PkrI	GCNGC	1 cut(s)	71
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	2 cut(s)	37, 357
PsuI	RGATCY	1 cut(s)	46
SatI	GCNGC	1 cut(s)	70
Sau3AI	GATC	2 cut(s)	46, 181
Sau96I	GGNCC	2 cut(s)	37, 357
SchI	GAGTC	1 cut(s)	135
SetI	ASST	3 cut(s)	18, 31, 206
SinI	GGWCC	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	4 cut(s)	56, 101, 338, 345
SsiI	CCGC	1 cut(s)	360
SspMI	CTAG	1 cut(s)	201
TaqI	TCGA	1 cut(s)	184
TasI	AATT	4 cut(s)	56, 101, 338, 345
TfiI	GAWTC	2 cut(s)	264, 281
TscAI	CASTG	1 cut(s)	194
TseI	GCWGC	1 cut(s)	69
TspDTI	ATGAA	1 cut(s)	238
TspRI	CASTG	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	357
XapI	RAATTY	2 cut(s)	101, 338
XceI	RCATGY	1 cut(s)	118
XmiI	GTMKAC	2 cut(s)	64, 139
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.