Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004010.1

Orthogroup ID

OG0003945

Physical Location & Seq

Genomic Coordinates Forward (+)

49278 .. 49646

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004010.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atggtggttgatgcgtatgagctgttgaaggagctgaggaggaagggttgcgagtccaatgcaggttcgtatacgactatgcttcaggtacttggcaggcaggagaagatggaggaggcgctgagggtgtttgtggagatggagaggagtggttgtgaggttgatgttgtgacttctactttgattagtggattttgtaagtgggggaagattgtgaggagttatgagattttggagagtataataaggaaagggtttacgccgagtcagatgacttacttgcagattatgttggctcatgagaagaaggaagacttggaggagtgtataattgatggggcaggtgaggaagattggttgcatgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

122

Amino Acids

13.97

Weight (kDa)

4.89

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003945)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05081
malus_domestica	MD10G1101700.v1.1
pyrus_communis	pycom09g04910 pycom15g38900
rosa_chinensis	RchiOBHm_Chr2g0123831 RchiOBHm_Chr4g0385181 RchiOBHm_Chr5g0064611
rosa_laevigata	RLG00000008165 RLG00000018415 RLG00000019614
rosa_multiflora	Rmu_sc0000571.1_g000023 Rmu_sc0001609.1_g000009 Rmu_sc0002893.1_g000021 Rmu_sc0003314.1_g000036 Rmu_sc0004010.1_g000014 Rmu_sc0008955.1_g000004 Rmu_sc0026245.1_g000002 Rmu_sc0027612.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379810 Rroxscaffold_7G00189080
rosa_rugosa	Rorug03G0223000 Rorug06G0045100
rosa_samantha	Rh1CG355700 Rh1DG373200 Rh2BG315600 Rh3BG307100 Rh3CG368600 Rh3DG369600 Rh6BG404300 Rh6DG233700 Rh6DG396800 Rh6DG396900 Rh7AG211300 Rh7CG234500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	332
Acc36I	ACCTGC	2 cut(s)	53, 332
AccI	GTMKAC	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	68
AfaI	GTAC	1 cut(s)	90
AgsI	TTSAA	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AluBI	AGCT	2 cut(s)	22, 34
AluI	AGCT	2 cut(s)	22, 34
ArsI	GACNNNNNNTTYG	2 cut(s)	163, 195
AspLEI	GCGC	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	356
BbsI	GAAGAC	1 cut(s)	318
BbvCI	CCTCAGC	2 cut(s)	35, 122
BccI	CCATC	3 cut(s)	103, 133, 329
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BfoI	RGCGCY	1 cut(s)	122
BfuAI	ACCTGC	2 cut(s)	53, 332
BpiI	GAAGAC	1 cut(s)	318
Bpu10I	CCTNAGC	2 cut(s)	35, 122
BsaXI	ACNNNNNCTCC	4 cut(s)	31, 61, 139, 169
BseMII	CTCAG	2 cut(s)	26, 113
BseRI	GAGGAG	5 cut(s)	52, 128, 160, 232, 335
BspCNI	CTCAG	2 cut(s)	27, 114
BspHI	TCATGA	1 cut(s)	298
BspMI	ACCTGC	2 cut(s)	53, 332
BssNAI	GTATAC	1 cut(s)	72
Bst1107I	GTATAC	1 cut(s)	72
BstC8I	GCNNGC	2 cut(s)	98, 363
BstDEI	CTNAG	2 cut(s)	35, 122
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstNSI	RCATGY	1 cut(s)	365
BstV2I	GAAGAC	1 cut(s)	318
BstZ17I	GTATAC	1 cut(s)	72
BveI	ACCTGC	2 cut(s)	53, 332
Cac8I	GCNNGC	2 cut(s)	98, 363
CciI	TCATGA	1 cut(s)	298
CfoI	GCGC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	2 cut(s)	299, 362
CviJI	RGCY	3 cut(s)	22, 34, 296
CviKI_1	RGCY	3 cut(s)	22, 34, 296
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	2 cut(s)	35, 122
Eco57I	CTGAAG	1 cut(s)	68
FaeI	CATG	2 cut(s)	302, 365
FaiI	YATR	9 cut(s)	18, 72, 80, 225, 242, 290, 300, 329, 363
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FatI	CATG	2 cut(s)	298, 361
FblI	GTMKAC	1 cut(s)	71
GlaI	GCGC	1 cut(s)	120
HaeII	RGCGCY	1 cut(s)	122
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	2 cut(s)	302, 365
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HinfI	GANTC	2 cut(s)	53, 265
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	2 cut(s)	72, 258
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	1 cut(s)	299
Hpy8I	GTNNAC	2 cut(s)	72, 258
HpyAV	CCTTC	3 cut(s)	22, 37, 301
HpyCH4V	TGCA	3 cut(s)	62, 283, 361
HpyF3I	CTNAG	2 cut(s)	35, 122
Hsp92II	CATG	2 cut(s)	302, 365
HspAI	GCGC	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	5 cut(s)	48, 71, 82, 86, 327
MaeIII	GTNAC	1 cut(s)	169
MboII	GAAGA	5 cut(s)	118, 220, 316, 323, 362
MluCI	AATT	1 cut(s)	330
MlyI	GAGTC	2 cut(s)	62, 274
NlaIII	CATG	2 cut(s)	302, 365
NmeAIII	GCCGAG	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	1 cut(s)	365
PaeI	GCATGC	1 cut(s)	365
PagI	TCATGA	1 cut(s)	298
PaqCI	CACCTGC	1 cut(s)	332
PleI	GAGTC	2 cut(s)	61, 273
PpsI	GAGTC	2 cut(s)	61, 273
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
SchI	GAGTC	2 cut(s)	62, 274
SetI	ASST	6 cut(s)	24, 36, 67, 90, 162, 346
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	1 cut(s)	330
TasI	AATT	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	169
XceI	RCATGY	1 cut(s)	365
XmiI	GTMKAC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.