Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g05081 |
| malus_domestica | MD10G1101700.v1.1 |
| pyrus_communis | pycom09g04910 pycom15g38900 |
| rosa_chinensis | RchiOBHm_Chr2g0123831 RchiOBHm_Chr4g0385181 RchiOBHm_Chr5g0064611 |
| rosa_laevigata | RLG00000008165 RLG00000018415 RLG00000019614 |
| rosa_multiflora | Rmu_sc0000571.1_g000023 Rmu_sc0001609.1_g000009 Rmu_sc0002893.1_g000021 Rmu_sc0003314.1_g000036 Rmu_sc0004010.1_g000014 Rmu_sc0008955.1_g000004 Rmu_sc0026245.1_g000002 Rmu_sc0027612.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00379810 Rroxscaffold_7G00189080 |
| rosa_rugosa | Rorug03G0223000 Rorug06G0045100 |
| rosa_samantha | Rh1CG355700 Rh1DG373200 Rh2BG315600 Rh3BG307100 Rh3CG368600 Rh3DG369600 Rh6BG404300 Rh6DG233700 Rh6DG396800 Rh6DG396900 Rh7AG211300 Rh7CG234500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 188 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 219 |
| AflII | CTTAAG | 1 cut(s) | 341 |
| AgsI | TTSAA | 1 cut(s) | 355 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 146, 178 |
| AluBI | AGCT | 1 cut(s) | 369 |
| AluI | AGCT | 1 cut(s) | 369 |
| Alw26I | GTCTC | 1 cut(s) | 304 |
| Ama87I | CYCGRG | 1 cut(s) | 319 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 276 |
| AsuHPI | GGTGA | 2 cut(s) | 247, 277 |
| AvaI | CYCGRG | 1 cut(s) | 319 |
| BbsI | GAAGAC | 1 cut(s) | 165 |
| BccI | CCATC | 2 cut(s) | 25, 176 |
| BcoDI | GTCTC | 1 cut(s) | 304 |
| BfaI | CTAG | 1 cut(s) | 327 |
| BfrI | CTTAAG | 1 cut(s) | 341 |
| BglII | AGATCT | 1 cut(s) | 323 |
| BmeT110I | CYCGRG | 1 cut(s) | 319 |
| BpiI | GAAGAC | 1 cut(s) | 165 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 31, 61 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 219 |
| Bse1I | ACTGG | 1 cut(s) | 303 |
| BseGI | GGATG | 2 cut(s) | 123, 196 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 219 |
| BseNI | ACTGG | 1 cut(s) | 303 |
| BseRI | GAGGAG | 4 cut(s) | 20, 52, 79, 182 |
| BsiHKCI | CYCGRG | 1 cut(s) | 319 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 219 |
| BsmAI | GTCTC | 1 cut(s) | 304 |
| BsmBI | CGTCTC | 1 cut(s) | 304 |
| BsoBI | CYCGRG | 1 cut(s) | 319 |
| Bsp143I | GATC | 2 cut(s) | 215, 323 |
| BspACI | CCGC | 1 cut(s) | 188 |
| BspHI | TCATGA | 1 cut(s) | 145 |
| BspTI | CTTAAG | 1 cut(s) | 341 |
| BsrI | ACTGG | 1 cut(s) | 303 |
| BssMI | GATC | 2 cut(s) | 215, 323 |
| Bst4CI | ACNGT | 1 cut(s) | 235 |
| Bst6I | CTCTTC | 1 cut(s) | 302 |
| BstAFI | CTTAAG | 1 cut(s) | 341 |
| BstC8I | GCNNGC | 1 cut(s) | 210 |
| BstF5I | GGATG | 2 cut(s) | 123, 196 |
| BstKTI | GATC | 2 cut(s) | 218, 326 |
| BstMAI | GTCTC | 1 cut(s) | 304 |
| BstMBI | GATC | 2 cut(s) | 215, 323 |
| BstNSI | RCATGY | 1 cut(s) | 212 |
| BstV2I | GAAGAC | 1 cut(s) | 165 |
| BstX2I | RGATCY | 1 cut(s) | 323 |
| BstYI | RGATCY | 1 cut(s) | 323 |
| BtsCI | GGATG | 2 cut(s) | 123, 196 |
| BtsIMutI | CAGTG | 1 cut(s) | 296 |
| Cac8I | GCNNGC | 1 cut(s) | 210 |
| CciI | TCATGA | 1 cut(s) | 145 |
| CviAII | CATG | 2 cut(s) | 146, 209 |
| CviJI | RGCY | 2 cut(s) | 143, 369 |
| CviKI_1 | RGCY | 2 cut(s) | 143, 369 |
| DpnI | GATC | 2 cut(s) | 217, 325 |
| DpnII | GATC | 2 cut(s) | 215, 323 |
| DraI | TTTAAA | 1 cut(s) | 228 |
| Eam1104I | CTCTTC | 1 cut(s) | 302 |
| EarI | CTCTTC | 1 cut(s) | 302 |
| EciI | GGCGGA | 1 cut(s) | 203 |
| Eco88I | CYCGRG | 1 cut(s) | 319 |
| Esp3I | CGTCTC | 1 cut(s) | 304 |
| FaeI | CATG | 2 cut(s) | 149, 212 |
| FaiI | YATR | 6 cut(s) | 72, 89, 137, 147, 176, 210 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 146, 178 |
| FatI | CATG | 2 cut(s) | 145, 208 |
| FokI | GGATG | 2 cut(s) | 130, 203 |
| FspBI | CTAG | 1 cut(s) | 327 |
| Hin1II | CATG | 2 cut(s) | 149, 212 |
| HinfI | GANTC | 1 cut(s) | 238 |
| HphI | GGTGA | 2 cut(s) | 247, 277 |
| Hpy166II | GTNNAC | 1 cut(s) | 105 |
| Hpy188I | TCNGA | 2 cut(s) | 117, 282 |
| Hpy188III | TCNNGA | 1 cut(s) | 146 |
| Hpy8I | GTNNAC | 1 cut(s) | 105 |
| HpyAV | CCTTC | 2 cut(s) | 148, 266 |
| HpyCH4III | ACNGT | 1 cut(s) | 235 |
| HpyCH4V | TGCA | 3 cut(s) | 130, 208, 252 |
| Hsp92II | CATG | 2 cut(s) | 149, 212 |
| Kzo9I | GATC | 2 cut(s) | 215, 323 |
| LpnPI | CCDG | 1 cut(s) | 284 |
| MaeI | CTAG | 1 cut(s) | 327 |
| MalI | GATC | 2 cut(s) | 217, 325 |
| MboI | GATC | 2 cut(s) | 215, 323 |
| MboII | GAAGA | 5 cut(s) | 67, 163, 170, 209, 319 |
| MflI | RGATCY | 1 cut(s) | 323 |
| MluCI | AATT | 2 cut(s) | 177, 254 |
| MmeI | TCCRAC | 2 cut(s) | 95, 225 |
| MnlI | CCTC | 6 cut(s) | 30, 43, 57, 160, 187, 256 |
| MroXI | GAANNNNTTC | 1 cut(s) | 276 |
| MseI | TTAA | 2 cut(s) | 227, 342 |
| MspCI | CTTAAG | 1 cut(s) | 341 |
| NdeII | GATC | 2 cut(s) | 215, 323 |
| NlaIII | CATG | 2 cut(s) | 149, 212 |
| NspI | RCATGY | 1 cut(s) | 212 |
| PaeI | GCATGC | 1 cut(s) | 212 |
| PagI | TCATGA | 1 cut(s) | 145 |
| PdmI | GAANNNNTTC | 1 cut(s) | 276 |
| PfeI | GAWTC | 1 cut(s) | 238 |
| PsuI | RGATCY | 1 cut(s) | 323 |
| SaqAI | TTAA | 2 cut(s) | 227, 342 |
| Sau3AI | GATC | 2 cut(s) | 215, 323 |
| SetI | ASST | 3 cut(s) | 267, 277, 371 |
| SmlI | CTYRAG | 1 cut(s) | 341 |
| SmoI | CTYRAG | 1 cut(s) | 341 |
| SphI | GCATGC | 1 cut(s) | 212 |
| Sse9I | AATT | 2 cut(s) | 177, 254 |
| SsiI | CCGC | 1 cut(s) | 188 |
| SspMI | CTAG | 1 cut(s) | 327 |
| TaaI | ACNGT | 1 cut(s) | 235 |
| TasI | AATT | 2 cut(s) | 177, 254 |
| TfiI | GAWTC | 1 cut(s) | 238 |
| Tru1I | TTAA | 2 cut(s) | 227, 342 |
| Tru9I | TTAA | 2 cut(s) | 227, 342 |
| TscAI | CASTG | 1 cut(s) | 303 |
| TspDTI | ATGAA | 1 cut(s) | 306 |
| TspRI | CASTG | 1 cut(s) | 303 |
| Vha464I | CTTAAG | 1 cut(s) | 341 |
| XceI | RCATGY | 1 cut(s) | 212 |
| XmnI | GAANNNNTTC | 1 cut(s) | 276 |
| XspI | CTAG | 1 cut(s) | 327 |