Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001609.1

Orthogroup ID

OG0003945

Physical Location & Seq

Genomic Coordinates Forward (+)

46014 .. 46520

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001609.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ctggtccccaaactagagctcgctctacatcaatccggcgtcgttttgcactccgacttaaccgagcgagtgctgtctcgacgctcgctctatattgtggggtataacaatttgcttggtgagtatgctcaggctgagatggtggttgatgcgtatgagctgttgaaggagttgaggaggaagggttgtgagtccaatgcgggtttgtatatgattatgattcaggtactttgcgggcaggagaagatggaggaggcgatgagggtgtttgtggagatggagaggagtggttgtgaggttgatgttgtgacttctactttgattagtggattttgtaagtgggggaagattgtgaggagttatgagattttggagagtataataaggaaagggtttacgccgagtcagatgacttacttgcagattatgttggctcatgagaagaaggaagacttggaggagtgtataattgatggggcaggtaaggaagattggttgcatgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

168

Amino Acids

19.15

Weight (kDa)

5.18

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003945)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05081
malus_domestica	MD10G1101700.v1.1
pyrus_communis	pycom09g04910 pycom15g38900
rosa_chinensis	RchiOBHm_Chr2g0123831 RchiOBHm_Chr4g0385181 RchiOBHm_Chr5g0064611
rosa_laevigata	RLG00000008165 RLG00000018415 RLG00000019614
rosa_multiflora	Rmu_sc0000571.1_g000023 Rmu_sc0001609.1_g000009 Rmu_sc0002893.1_g000021 Rmu_sc0003314.1_g000036 Rmu_sc0004010.1_g000014 Rmu_sc0008955.1_g000004 Rmu_sc0026245.1_g000002 Rmu_sc0027612.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379810 Rroxscaffold_7G00189080
rosa_rugosa	Rorug03G0223000 Rorug06G0045100
rosa_samantha	Rh1CG355700 Rh1DG373200 Rh2BG315600 Rh3BG307100 Rh3CG368600 Rh3DG369600 Rh6BG404300 Rh6DG233700 Rh6DG396800 Rh6DG396900 Rh7AG211300 Rh7CG234500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	470
AciI	CCGC	2 cut(s)	200, 234
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	166
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	2 cut(s)	19, 160
AluI	AGCT	2 cut(s)	19, 160
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	81
ArsI	GACNNNNNNTTYG	2 cut(s)	301, 333
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	21
BccI	CCATC	4 cut(s)	133, 241, 271, 467
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	470
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	456
Bpu10I	CCTNAGC	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	39
BsaXI	ACNNNNNCTCC	4 cut(s)	169, 199, 277, 307
BseMII	CTCAG	2 cut(s)	126, 143
BseRI	GAGGAG	5 cut(s)	190, 266, 298, 370, 473
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	36
BsmAI	GTCTC	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	21
BspACI	CCGC	2 cut(s)	200, 234
BspCNI	CTCAG	2 cut(s)	127, 142
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	470
BssNI	GRCGYC	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	4 cut(s)	21, 86, 236, 501
BstDEI	CTNAG	2 cut(s)	129, 135
BstMAI	GTCTC	1 cut(s)	81
BstNSI	RCATGY	1 cut(s)	503
BstV2I	GAAGAC	1 cut(s)	456
BtgZI	GCGATG	1 cut(s)	272
BveI	ACCTGC	1 cut(s)	470
Cac8I	GCNNGC	4 cut(s)	21, 86, 236, 501
CciI	TCATGA	1 cut(s)	436
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	2 cut(s)	28, 90
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	2 cut(s)	437, 500
CviJI	RGCY	4 cut(s)	19, 134, 160, 434
CviKI_1	RGCY	4 cut(s)	19, 134, 160, 434
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	2 cut(s)	129, 135
Ecl136II	GAGCTC	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	19
EcoICRI	GAGCTC	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	2 cut(s)	440, 503
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FatI	CATG	2 cut(s)	436, 499
FauI	CCCGC	2 cut(s)	193, 227
FriOI	GRGCYC	1 cut(s)	21
FspBI	CTAG	1 cut(s)	14
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	2 cut(s)	28, 90
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	440, 503
HinfI	GANTC	3 cut(s)	191, 220, 403
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	396
Hpy188I	TCNGA	2 cut(s)	55, 408
Hpy188III	TCNNGA	2 cut(s)	78, 437
Hpy8I	GTNNAC	1 cut(s)	396
Hpy99I	CGWCG	2 cut(s)	44, 84
HpyAV	CCTTC	3 cut(s)	160, 175, 439
HpyCH4V	TGCA	3 cut(s)	49, 421, 499
HpyF3I	CTNAG	2 cut(s)	129, 135
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	440, 503
LpnPI	CCDG	5 cut(s)	49, 116, 209, 224, 465
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	307
MboII	GAAGA	5 cut(s)	256, 358, 454, 461, 500
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	2 cut(s)	109, 468
MlyI	GAGTC	2 cut(s)	200, 412
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	9 cut(s)	168, 171, 244, 247, 255, 276, 289, 348, 451
MseI	TTAA	1 cut(s)	59
MspI	CCGG	1 cut(s)	36
NlaIII	CATG	2 cut(s)	440, 503
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	426
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	1 cut(s)	503
PaeI	GCATGC	1 cut(s)	503
PagI	TCATGA	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	220
PleI	GAGTC	2 cut(s)	199, 411
PpsI	GAGTC	2 cut(s)	199, 411
Psp124BI	GAGCTC	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SacI	GAGCTC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	59
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	200, 412
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	5 cut(s)	21, 162, 228, 300, 484
SfaNI	GCATC	1 cut(s)	139
SinI	GGWCC	1 cut(s)	4
SphI	GCATGC	1 cut(s)	503
Sse9I	AATT	2 cut(s)	109, 468
SsiI	CCGC	2 cut(s)	200, 234
SspMI	CTAG	1 cut(s)	14
SstI	GAGCTC	1 cut(s)	21
TaqI	TCGA	1 cut(s)	79
TasI	AATT	2 cut(s)	109, 468
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TseFI	GTSAC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	4
XceI	RCATGY	1 cut(s)	503
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.