Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003945

Physical Location & Seq

Genomic Coordinates Reverse (-)

41627702 .. 41628055

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG233700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAAGATCAGTTCTCGGCGCCTCGAAACTGACCCGAAACCGACCCAAGACAACTCGACCCATTGCGAGTTCGCCGCCGACTTGGAGAAGATATACAGAATATTACGGAAATTCCACTCCTATGTCCCCAAACTAGAGCTCGCTCTACATCAATCCGGTATTGTTTTACGCTCCGGCTTAACCGAGCAAGTGTTGAACCTGTGCGGCGACGCCGACAACTTGGGGTATAGATTCTTCGTTTGGGCTTCAATGCCGGACAGATTTCTGCCTCGACGACTACGCTGGAGTCTCTGTCTGAGTCGAAACTATGCTGCACGACGACATATTGAGAGCCTCGATGCCGGACCGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

117

Amino Acids

13.59

Weight (kDa)

9.4

Isoelectric Point (pI)

62.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003945)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05081
malus_domestica	MD10G1101700.v1.1
pyrus_communis	pycom09g04910 pycom15g38900
rosa_chinensis	RchiOBHm_Chr2g0123831 RchiOBHm_Chr4g0385181 RchiOBHm_Chr5g0064611
rosa_laevigata	RLG00000008165 RLG00000018415 RLG00000019614
rosa_multiflora	Rmu_sc0000571.1_g000023 Rmu_sc0001609.1_g000009 Rmu_sc0002893.1_g000021 Rmu_sc0003314.1_g000036 Rmu_sc0004010.1_g000014 Rmu_sc0008955.1_g000004 Rmu_sc0026245.1_g000002 Rmu_sc0027612.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379810 Rroxscaffold_7G00189080
rosa_rugosa	Rorug03G0223000 Rorug06G0045100
rosa_samantha	Rh1CG355700 Rh1DG373200 Rh2BG315600 Rh3BG307100 Rh3CG368600 Rh3DG369600 Rh6BG404300 Rh6DG233700 Rh6DG396800 Rh6DG396900 Rh7AG211300 Rh7CG234500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	18
AciI	CCGC	2 cut(s)	75, 204
AcsI	RAATTY	1 cut(s)	110
AcyI	GRCGYC	2 cut(s)	19, 210
AgsI	TTSAA	2 cut(s)	196, 249
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	293
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	18
BanII	GRGCYC	1 cut(s)	141
BarI	GAAGNNNNNNTAC	2 cut(s)	218, 250
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	134
BfoI	RGCGCY	1 cut(s)	22
BisI	GCNGC	3 cut(s)	75, 205, 312
BlsI	GCNGC	3 cut(s)	76, 206, 313
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	20
BmsI	GCATC	1 cut(s)	328
BpmI	CTGGAG	1 cut(s)	304
BsaHI	GRCGYC	2 cut(s)	19, 210
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	277, 307
Bse3DI	GCAATG	1 cut(s)	61
BseMI	GCAATG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	298
BsgI	GTGCAG	1 cut(s)	297
BshNI	GGYRCC	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	4 cut(s)	156, 174, 254, 342
BslFI	GGGAC	1 cut(s)	110
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	6
BspACI	CCGC	2 cut(s)	75, 204
BspCNI	CTCAG	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	20
BspT107I	GGYRCC	1 cut(s)	18
BsrDI	GCAATG	1 cut(s)	61
BssMI	GATC	1 cut(s)	6
BssNI	GRCGYC	2 cut(s)	19, 210
BstACI	GRCGYC	2 cut(s)	19, 210
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	296
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	1 cut(s)	9
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	298
Cac8I	GCNNGC	1 cut(s)	141
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	344
CpoI	CGGWCCG	1 cut(s)	344
CseI	GACGC	1 cut(s)	218
CspI	CGGWCCG	1 cut(s)	344
CviJI	RGCY	4 cut(s)	139, 177, 245, 333
CviKI_1	RGCY	4 cut(s)	139, 177, 245, 333
DdeI	CTNAG	1 cut(s)	296
DinI	GGCGCC	1 cut(s)	20
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	344
Eco53kI	GAGCTC	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	141
EgeI	GGCGCC	1 cut(s)	20
EheI	GGCGCC	1 cut(s)	20
FaiI	YATR	5 cut(s)	94, 123, 228, 309, 324
FaqI	GGGAC	1 cut(s)	110
Fnu4HI	GCNGC	3 cut(s)	75, 205, 312
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	3 cut(s)	75, 205, 312
FspBI	CTAG	1 cut(s)	134
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	3 cut(s)	75, 205, 312
GsuI	CTGGAG	1 cut(s)	304
HaeII	RGCGCY	1 cut(s)	22
HapII	CCGG	4 cut(s)	156, 174, 254, 342
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	21
Hin1I	GRCGYC	2 cut(s)	19, 210
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	3 cut(s)	231, 286, 298
HpaII	CCGG	4 cut(s)	156, 174, 254, 342
Hpy188I	TCNGA	1 cut(s)	297
Hpy99I	CGWCG	3 cut(s)	212, 276, 321
HpyCH4V	TGCA	1 cut(s)	314
HpyF3I	CTNAG	1 cut(s)	296
Hsp92I	GRCGYC	2 cut(s)	19, 210
HspAI	GCGC	1 cut(s)	19
KasI	GGCGCC	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	6
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	5 cut(s)	169, 187, 212, 267, 268
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	1 cut(s)	134
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	3 cut(s)	16, 100, 226
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	1 cut(s)	110
Mly113I	GGCGCC	1 cut(s)	19
MlyI	GAGTC	2 cut(s)	295, 307
MnlI	CCTC	3 cut(s)	32, 279, 344
MseI	TTAA	1 cut(s)	179
MslI	CAYNNNNRTG	1 cut(s)	120
MspI	CCGG	4 cut(s)	156, 174, 254, 342
NarI	GGCGCC	1 cut(s)	19
NdeII	GATC	1 cut(s)	6
NlaIV	GGNNCC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	231
PkrI	GCNGC	3 cut(s)	76, 206, 313
PleI	GAGTC	2 cut(s)	294, 306
PluTI	GGCGCC	1 cut(s)	22
PpsI	GAGTC	2 cut(s)	294, 306
Psp124BI	GAGCTC	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	20
PspPI	GGNCC	1 cut(s)	344
RseI	CAYNNNNRTG	1 cut(s)	120
Rsr2I	CGGWCCG	1 cut(s)	344
RsrII	CGGWCCG	1 cut(s)	344
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	3 cut(s)	75, 205, 312
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	344
SchI	GAGTC	2 cut(s)	295, 307
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	2 cut(s)	141, 201
SfaNI	GCATC	1 cut(s)	328
SfoI	GGCGCC	1 cut(s)	20
SinI	GGWCC	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	1 cut(s)	110
SsiI	CCGC	2 cut(s)	75, 204
SspDI	GGCGCC	1 cut(s)	18
SspI	AATATT	1 cut(s)	102
SspMI	CTAG	1 cut(s)	134
SstI	GAGCTC	1 cut(s)	141
TaqI	TCGA	5 cut(s)	24, 56, 271, 301, 336
TasI	AATT	1 cut(s)	110
TauI	GCSGC	2 cut(s)	77, 207
TfiI	GAWTC	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TseI	GCWGC	1 cut(s)	311
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	1 cut(s)	110
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.