MD10G1101700.v1.1

magnesium transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
16582306 .. 16585626
3321 bp
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UTR
Exon/CDS
Intron
MD10G1101700.v1.1.491

Sequence Viewer

Length: 318 bp
ATGAGAGAGGCTTCACGGATATTCTTAGAAATGAGGGACGCTGGGATTTCTCCAGATGTAATCACTTACAACACCTTTGTGGCAAGTTATGCAGCTGATTCACTGTTCGAGGAAGCTATTGATGTGGTCTGCTACATGATTAAGAACGGCTGCAAACCAAACCAGAACACGTACAACTCCATTGTAGACTGGTACTGTAAGCACAATCGAAGGGACAATGGAGTTAAGTTTGTCAATAACCTTCTCAATCTTAATCCGCATATTTCCAAGGGGGAGGAGTCCAGATTACTAGACCGTATTAAAAATAAGTGGTCATAG

Protein Analysis

106

Amino Acids

12.18

Weight (kDa)

7.71

Isoelectric Point (pI)

33.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 1 - 29 5.1e-06 PPR repeat family
PPR_3 PF13812 6 - 65 3e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 15 - 46 5.8e-06 PPR repeat
PPR_2 PF13041 18 - 67 1.6e-14 PPR repeat family
PPR_1 PF12854 49 - 79 5.3e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 186
AciI CCGC 1 cut(s) 257
AfaI GTAC 2 cut(s) 173, 194
AflIII ACRYGT 1 cut(s) 168
AleI CACNNNNGTG 1 cut(s) 77
AluBI AGCT 2 cut(s) 95, 116
AluI AGCT 2 cut(s) 95, 116
ApeKI GCWGC 2 cut(s) 92, 150
BbvI GCAGC 2 cut(s) 104, 137
BceAI ACGGC 1 cut(s) 163
BfaI CTAG 1 cut(s) 290
BisI GCNGC 2 cut(s) 93, 151
BlsI GCNGC 2 cut(s) 94, 152
BpmI CTGGAG 1 cut(s) 36
BsaAI YACGTR 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 267
Bse1I ACTGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 290
BseXI GCAGC 2 cut(s) 104, 137
BseYI CCCAGC 1 cut(s) 41
BslFI GGGAC 2 cut(s) 50, 227
BsmFI GGGAC 2 cut(s) 50, 227
BspACI CCGC 1 cut(s) 257
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 267
Bst4CI ACNGT 3 cut(s) 105, 197, 296
BstAPI GCANNNNNTGC 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstV1I GCAGC 2 cut(s) 104, 137
BtsIMutI CAGTG 1 cut(s) 101
CseI GACGC 1 cut(s) 47
Csp6I GTAC 2 cut(s) 172, 193
CviAII CATG 1 cut(s) 136
CviJI RGCY 4 cut(s) 11, 95, 116, 150
CviKI_1 RGCY 4 cut(s) 11, 95, 116, 150
CviQI GTAC 2 cut(s) 172, 193
DdeI CTNAG 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 1 cut(s) 139
FaiI YATR 4 cut(s) 90, 137, 261, 316
FaqI GGGAC 2 cut(s) 50, 227
FatI CATG 1 cut(s) 135
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 2 cut(s) 93, 151
Fsp4HI GCNGC 2 cut(s) 93, 151
FspBI CTAG 1 cut(s) 290
GluI GCNGC 2 cut(s) 93, 151
GsaI CCCAGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 36
HgaI GACGC 1 cut(s) 47
Hin1II CATG 1 cut(s) 139
HinfI GANTC 2 cut(s) 98, 278
Hpy166II GTNNAC 1 cut(s) 187
Hpy188III TCNNGA 2 cut(s) 53, 282
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 2 cut(s) 204, 251
HpyCH4III ACNGT 3 cut(s) 105, 197, 296
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 2 cut(s) 92, 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 170
Hsp92II CATG 1 cut(s) 139
LpnPI CCDG 5 cut(s) 27, 66, 175, 176, 295
Lsp1109I GCAGC 2 cut(s) 104, 137
MaeI CTAG 1 cut(s) 290
MaeII ACGT 1 cut(s) 170
MlyI GAGTC 1 cut(s) 287
MnlI CCTC 3 cut(s) 27, 103, 268
MseI TTAA 4 cut(s) 141, 225, 252, 300
MslI CAYNNNNRTG 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 89
NlaIII CATG 1 cut(s) 139
OliI CACNNNNGTG 1 cut(s) 77
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 2 cut(s) 94, 152
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
Ppu21I YACGTR 1 cut(s) 171
PspFI CCCAGC 1 cut(s) 41
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 2 cut(s) 173, 194
RsaNI GTAC 2 cut(s) 172, 193
RseI CAYNNNNRTG 1 cut(s) 77
SaqAI TTAA 4 cut(s) 141, 225, 252, 300
SatI GCNGC 2 cut(s) 93, 151
SchI GAGTC 1 cut(s) 287
SetI ASST 5 cut(s) 77, 97, 118, 173, 243
SmiMI CAYNNNNRTG 1 cut(s) 77
SsiI CCGC 1 cut(s) 257
SspMI CTAG 1 cut(s) 290
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 3 cut(s) 105, 197, 296
TaiI ACGT 1 cut(s) 173
TaqI TCGA 2 cut(s) 108, 208
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 4 cut(s) 141, 225, 252, 300
Tru9I TTAA 4 cut(s) 141, 225, 252, 300
TscAI CASTG 1 cut(s) 108
TseI GCWGC 2 cut(s) 92, 150
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 1 cut(s) 108
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.