Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000571.1

Orthogroup ID

OG0003945

Physical Location & Seq

Genomic Coordinates Reverse (-)

90416 .. 92867

Gene Structure 2452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000571.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atgaggcagaaggggaatctagggggttgtgagctcattgttcaagggggagaggacatccgcctatcggtcggaagcttttgggtttctgttcaaagagaactcgaggagagagaaaatagatttgggtctctctctctcttccaccagtgggtatccaggcataaccccgcatcacctccaccaccatcgtgctcagaggcctccgacgatccaccagcagcctctccgtcattagggccaactggcggaccaagtgaccaaggcagcagacgacccagacccaagcctagacgactcaacccattgcgagttcggccccaacttggagaagatatacagaatattacgcaaattccactcctaggtccccaaactagagctcgctctacatcaatccagcgtcgttttgcactccagcttaaccgagcgagtgctgtctcggctggcaagatggctgatgcgtatgagctgttgaaggagatgaggatgaagggttgtgagcccaatgcaggttcgtatacgactatgattcaggcgctttgtggggaggagaagatggaggaggtgatgagggtgtttgtggagatggagatcagtggttgtgaggttgatattgtgacttatactactttgattagtggattttataagtgggggaagattgtgaggagttatgagattttggaaagtatgataaggaaagggtttatgccgagtcagatgacttacttgcagattatgttggctcatgagaagaaggaagacttggaggagtgtataattgatggggcagatgaggaagattggttgcatgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

273

Amino Acids

30.62

Weight (kDa)

5.74

Isoelectric Point (pI)

54.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003945)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05081
malus_domestica	MD10G1101700.v1.1
pyrus_communis	pycom09g04910 pycom15g38900
rosa_chinensis	RchiOBHm_Chr2g0123831 RchiOBHm_Chr4g0385181 RchiOBHm_Chr5g0064611
rosa_laevigata	RLG00000008165 RLG00000018415 RLG00000019614
rosa_multiflora	Rmu_sc0000571.1_g000023 Rmu_sc0001609.1_g000009 Rmu_sc0002893.1_g000021 Rmu_sc0003314.1_g000036 Rmu_sc0004010.1_g000014 Rmu_sc0008955.1_g000004 Rmu_sc0026245.1_g000002 Rmu_sc0027612.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379810 Rroxscaffold_7G00189080
rosa_rugosa	Rorug03G0223000 Rorug06G0045100
rosa_samantha	Rh1CG355700 Rh1DG373200 Rh2BG315600 Rh3BG307100 Rh3CG368600 Rh3DG369600 Rh6BG404300 Rh6DG233700 Rh6DG396800 Rh6DG396900 Rh7AG211300 Rh7CG234500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	651
Acc36I	ACCTGC	1 cut(s)	503
AccI	GTMKAC	1 cut(s)	521
AciI	CCGC	3 cut(s)	61, 171, 249
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	354
AfiI	CCNNNNNNNGG	7 cut(s)	67, 151, 236, 248, 326, 365, 512
AgsI	TTSAA	3 cut(s)	44, 95, 478
AjnI	CCWGG	1 cut(s)	158
AjuI	GAANNNNNNNTTGG	4 cut(s)	108, 140, 752, 784
AleI	CACNNNNGTG	1 cut(s)	190
AluBI	AGCT	5 cut(s)	34, 78, 383, 421, 472
AluI	AGCT	5 cut(s)	34, 78, 383, 421, 472
Alw21I	GWGCWC	3 cut(s)	36, 197, 385
Alw26I	GTCTC	2 cut(s)	135, 445
AlwI	GGATC	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	3 cut(s)	201, 239, 317
ApeKI	GCWGC	2 cut(s)	221, 267
ApoI	RAATTY	1 cut(s)	354
AspA2I	CCTAGG	1 cut(s)	364
AspLEI	GCGC	1 cut(s)	541
AspS9I	GGNCC	4 cut(s)	239, 251, 318, 368
AsuHPI	GGTGA	2 cut(s)	168, 580
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	2 cut(s)	251, 368
AvrII	CCTAGG	1 cut(s)	364
BanII	GRGCYC	3 cut(s)	36, 385, 507
BbsI	GAAGAC	1 cut(s)	771
Bbv12I	GWGCWC	3 cut(s)	36, 197, 385
BbvI	GCAGC	2 cut(s)	233, 279
BccI	CCATC	5 cut(s)	196, 448, 553, 583, 782
BciT130I	CCWGG	1 cut(s)	160
BciVI	GTATCC	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	135, 445
BfaI	CTAG	4 cut(s)	20, 291, 365, 378
BfoI	RGCGCY	1 cut(s)	542
BfuAI	ACCTGC	1 cut(s)	503
BfuI	GTATCC	1 cut(s)	166
BisI	GCNGC	2 cut(s)	222, 268
BlnI	CCTAGG	1 cut(s)	364
BlsI	GCNGC	2 cut(s)	223, 269
Bme1390I	CCNGG	1 cut(s)	160
Bme18I	GGWCC	2 cut(s)	251, 368
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	4 cut(s)	239, 251, 318, 368
BmiI	GGNNCC	2 cut(s)	320, 370
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	2 cut(s)	182, 451
BpiI	GAAGAC	1 cut(s)	771
BpmI	CTGGAG	1 cut(s)	401
BsaBI	GATNNNNATC	1 cut(s)	593
BsaI	GGTCTC	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	262, 364
Bsc4I	CCNNNNNNNGG	7 cut(s)	67, 151, 236, 248, 326, 365, 512
Bse1I	ACTGG	2 cut(s)	148, 250
Bse3DI	GCAATG	1 cut(s)	305
Bse8I	GATNNNNATC	1 cut(s)	593
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	2 cut(s)	262, 364
BseGI	GGATG	2 cut(s)	57, 495
BseJI	GATNNNNATC	1 cut(s)	593
BseLI	CCNNNNNNNGG	7 cut(s)	67, 151, 236, 248, 326, 365, 512
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	2 cut(s)	148, 250
BseRI	GAGGAG	5 cut(s)	122, 566, 578, 685, 788
BseXI	GCAGC	2 cut(s)	233, 279
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	3 cut(s)	203, 241, 319
BsiEI	CGRYCG	1 cut(s)	72
BsiHKAI	GWGCWC	3 cut(s)	36, 197, 385
BsiHKCI	CYCGRG	1 cut(s)	104
BslFI	GGGAC	1 cut(s)	354
BslI	CCNNNNNNNGG	7 cut(s)	67, 151, 236, 248, 326, 365, 512
BsmAI	GTCTC	2 cut(s)	135, 445
BsmFI	GGGAC	1 cut(s)	354
BsnI	GGCC	3 cut(s)	203, 241, 319
Bso31I	GGTCTC	1 cut(s)	135
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	4 cut(s)	36, 197, 385, 507
Bsp143I	GATC	2 cut(s)	211, 594
BspACI	CCGC	3 cut(s)	61, 171, 249
BspANI	GGCC	3 cut(s)	203, 241, 319
BspCNI	CTCAG	1 cut(s)	209
BspHI	TCATGA	1 cut(s)	751
BspLI	GGNNCC	2 cut(s)	320, 370
BspMI	ACCTGC	1 cut(s)	503
BspPI	GGATC	1 cut(s)	206
BspTNI	GGTCTC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	148, 250
BssECI	CCNNGG	2 cut(s)	262, 364
BssMI	GATC	2 cut(s)	211, 594
BssNAI	GTATAC	1 cut(s)	522
BssT1I	CCWWGG	2 cut(s)	262, 364
Bst1107I	GTATAC	1 cut(s)	522
Bst2UI	CCWGG	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	146
BstC8I	GCNNGC	3 cut(s)	385, 448, 816
BstDEI	CTNAG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	57, 495
BstH2I	RGCGCY	1 cut(s)	542
BstHHI	GCGC	1 cut(s)	541
BstKTI	GATC	2 cut(s)	214, 597
BstMAI	GTCTC	2 cut(s)	135, 445
BstMBI	GATC	2 cut(s)	211, 594
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	2 cut(s)	316, 443
BstNI	CCWGG	1 cut(s)	160
BstNSI	RCATGY	1 cut(s)	818
BstSCI	CCNGG	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	233, 279
BstV2I	GAAGAC	1 cut(s)	771
BstZ17I	GTATAC	1 cut(s)	522
BsuI	GTATCC	1 cut(s)	166
BsuRI	GGCC	3 cut(s)	203, 241, 319
BtsCI	GGATG	2 cut(s)	57, 495
BtsIMutI	CAGTG	2 cut(s)	155, 604
BveI	ACCTGC	1 cut(s)	503
Cac8I	GCNNGC	3 cut(s)	385, 448, 816
CciI	TCATGA	1 cut(s)	751
CfoI	GCGC	1 cut(s)	541
Cfr13I	GGNCC	4 cut(s)	239, 251, 318, 368
CseI	GACGC	1 cut(s)	392
CviAII	CATG	2 cut(s)	752, 815
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	2 cut(s)	213, 596
DpnII	GATC	2 cut(s)	211, 594
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
EciI	GGCGGA	2 cut(s)	50, 264
Ecl136II	GAGCTC	2 cut(s)	34, 383
Eco130I	CCWWGG	2 cut(s)	262, 364
Eco147I	AGGCCT	1 cut(s)	203
Eco24I	GRGCYC	3 cut(s)	36, 385, 507
Eco31I	GGTCTC	1 cut(s)	135
Eco47I	GGWCC	2 cut(s)	251, 368
Eco53kI	GAGCTC	2 cut(s)	34, 383
Eco88I	CYCGRG	1 cut(s)	104
EcoICRI	GAGCTC	2 cut(s)	34, 383
EcoO109I	RGGNCCY	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	158
EcoT14I	CCWWGG	2 cut(s)	262, 364
EcoT38I	GRGCYC	3 cut(s)	36, 385, 507
ErhI	CCWWGG	2 cut(s)	262, 364
FaeI	CATG	2 cut(s)	755, 818
FalI	AAGNNNNNCTT	2 cut(s)	752, 784
FaqI	GGGAC	1 cut(s)	354
FatI	CATG	2 cut(s)	751, 814
FauI	CCCGC	1 cut(s)	178
FblI	GTMKAC	1 cut(s)	521
Fnu4HI	GCNGC	2 cut(s)	222, 268
FokI	GGATG	2 cut(s)	44, 502
FriOI	GRGCYC	3 cut(s)	36, 385, 507
Fsp4HI	GCNGC	2 cut(s)	222, 268
FspBI	CTAG	4 cut(s)	20, 291, 365, 378
GlaI	GCGC	1 cut(s)	540
GluI	GCNGC	2 cut(s)	222, 268
GsuI	CTGGAG	1 cut(s)	401
HaeII	RGCGCY	1 cut(s)	542
HaeIII	GGCC	3 cut(s)	203, 241, 319
HgaI	GACGC	1 cut(s)	392
HhaI	GCGC	1 cut(s)	541
Hin1II	CATG	2 cut(s)	755, 818
Hin6I	GCGC	1 cut(s)	539
HinP1I	GCGC	1 cut(s)	539
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	4 cut(s)	16, 297, 532, 718
HphI	GGTGA	2 cut(s)	168, 580
Hpy166II	GTNNAC	1 cut(s)	522
Hpy188I	TCNGA	4 cut(s)	74, 199, 208, 723
Hpy188III	TCNNGA	1 cut(s)	752
Hpy8I	GTNNAC	1 cut(s)	522
Hpy99I	CGWCG	2 cut(s)	212, 408
HpyAV	CCTTC	4 cut(s)	4, 472, 487, 754
HpyCH4V	TGCA	4 cut(s)	413, 512, 736, 814
HpyF10VI	GCNNNNNNNGC	2 cut(s)	316, 443
HpyF3I	CTNAG	1 cut(s)	196
Hsp92II	CATG	2 cut(s)	755, 818
HspAI	GCGC	1 cut(s)	539
Kzo9I	GATC	2 cut(s)	211, 594
Lsp1109I	GCAGC	2 cut(s)	233, 279
LweI	GCATC	2 cut(s)	182, 451
MaeI	CTAG	4 cut(s)	20, 291, 365, 378
MaeIII	GTNAC	2 cut(s)	257, 619
MalI	GATC	2 cut(s)	213, 596
MboI	GATC	2 cut(s)	211, 594
MboII	GAAGA	7 cut(s)	133, 344, 568, 673, 769, 776, 815
MhlI	GDGCHC	4 cut(s)	36, 197, 385, 507
MluCI	AATT	2 cut(s)	354, 783
MlyI	GAGTC	2 cut(s)	291, 727
MmeI	TCCRAC	2 cut(s)	52, 231
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	190
MspR9I	CCNGG	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	2 cut(s)	316, 443
NdeII	GATC	2 cut(s)	211, 594
NlaIII	CATG	2 cut(s)	755, 818
NlaIV	GGNNCC	2 cut(s)	320, 370
NmeAIII	GCCGAG	2 cut(s)	422, 741
NmuCI	GTSAC	2 cut(s)	257, 619
NspI	RCATGY	1 cut(s)	818
OliI	CACNNNNGTG	1 cut(s)	190
PaeI	GCATGC	1 cut(s)	818
PaeR7I	CTCGAG	1 cut(s)	104
PagI	TCATGA	1 cut(s)	751
PceI	AGGCCT	1 cut(s)	203
PfeI	GAWTC	2 cut(s)	16, 532
PkrI	GCNGC	2 cut(s)	223, 269
PleI	GAGTC	2 cut(s)	291, 726
PpsI	GAGTC	2 cut(s)	291, 726
PpuMI	RGGWCCY	1 cut(s)	368
PsiI	TTATAA	1 cut(s)	651
Psp124BI	GAGCTC	2 cut(s)	36, 385
Psp5II	RGGWCCY	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	2 cut(s)	320, 370
PspPI	GGNCC	4 cut(s)	239, 251, 318, 368
PspPPI	RGGWCCY	1 cut(s)	368
PspXI	VCTCGAGB	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	190
SacI	GAGCTC	2 cut(s)	36, 385
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	2 cut(s)	222, 268
Sau3AI	GATC	2 cut(s)	211, 594
Sau96I	GGNCC	4 cut(s)	239, 251, 318, 368
SchI	GAGTC	2 cut(s)	291, 727
ScrFI	CCNGG	1 cut(s)	160
SduI	GDGCHC	4 cut(s)	36, 197, 385, 507
SfaNI	GCATC	2 cut(s)	182, 451
Sfr274I	CTCGAG	1 cut(s)	104
SinI	GGWCC	2 cut(s)	251, 368
SlaI	CTCGAG	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SphI	GCATGC	1 cut(s)	818
Sse9I	AATT	2 cut(s)	354, 783
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	3 cut(s)	61, 171, 249
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	4 cut(s)	20, 291, 365, 378
SstI	GAGCTC	2 cut(s)	36, 385
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	2 cut(s)	262, 364
TaqI	TCGA	1 cut(s)	105
TaqII	GACCGA	1 cut(s)	58
TasI	AATT	2 cut(s)	354, 783
TfiI	GAWTC	2 cut(s)	16, 532
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	2 cut(s)	155, 604
TseFI	GTSAC	2 cut(s)	257, 619
TseI	GCWGC	2 cut(s)	221, 267
Tsp45I	GTSAC	2 cut(s)	257, 619
TspDTI	ATGAA	1 cut(s)	506
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	2 cut(s)	155, 604
VpaK11BI	GGWCC	2 cut(s)	251, 368
XapI	RAATTY	1 cut(s)	354
XceI	RCATGY	1 cut(s)	818
XhoI	CTCGAG	1 cut(s)	104
XmaJI	CCTAGG	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	521
XspI	CTAG	4 cut(s)	20, 291, 365, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.