Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003603

Physical Location & Seq

Genomic Coordinates Reverse (-)

6987280 .. 6991232

Gene Structure 3953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07590.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGAAGACTACACTCTCGTGGTGAGGAAGTCCTGCTTTGGTCTCCCTACAGCTTGCCCTTCAAGCCTCCCTGTCTACTTCTACCTCAAATTCGCTAACCTTCCCTTTCAATTGGACTATAATCTCACCTACCCTGATTCCGATATGATTCCGTATGTTGAATCATCGGGTGAGGGTGAGTATGTGGCGTATAACAATGAGAAGGGTGGTGTCATTGCGAGACTAAAAGAAGATGGCATTGTGGATTTGGACAATGAATTTGAGTTGGTCTCAGAATGGATATCTATGAAGGCAATGGTTAGCAGCTGGCTTGCTGATGCACTCAAGTATGAGCTCTGGGTGGGAACCGATGGTGCTGCTGCGCAAAGTATATATTGTTCTGATCTTCCGTGGCCTATAGGAAAAGTTTTGTTTTTGAAGCAAGTGTACTATGTGAAGCAGCAATTTGGGATTACTAAGGACAATGCTGACAATATCGAAGAACAGATATACAAGCGAGCCAGCGTTGCGTTTGGAGCTCTGTCTAGTAGATTGGCGGATCAGATGTTTTTATATGAAAACAGGCCATCAAGTCTGGATGCAGTCTTTTTGAGCCAGGCACTTATCACTCTTCAAGCATTACCAGAAACATCAATTCTGCGAAGCAAGCTCTTAGAACATGAGAACCTTGTTGGGTATGCCAGTAGGATAAATATGGAGTTAGTTGATGTGGGTGCTTCATCTGCAGTCCCAAACTTCCATGCAAATCCTTCATCATCAGCTCCAAGAAAAGGTCCTTCAAACTGGCGTTCTAGACCCAAGACTAAACCCAAAAGGGAAAAAACAAAGGAGGAGAAAGATTTTAAGAGAAGGGCGAAATATTTTTTGGTAGCGCAGCTGGTTTCGGTTGTAGTATTTGTCACTCTCATGAGTCATGTTGATGGGCTTGAAGTTGAGCTTGATGATGATGATGAAGGCTTTGATCACGTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009536 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_6 GST_N_4

Protein Analysis

325

Amino Acids

36.51

Weight (kDa)

4.97

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_4	PF17172	20 - 116	6.5e-17	Glutathione S-transferase N-terminal domain
GST_C_6	PF17171	170 - 206	9.2e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19080 AT2G19080
fragaria_vesca	FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590
malus_domestica	MD13G1245600.v1.1
prunus_persica	Prupe.1G079200_v2.0.a1
pyrus_communis	pycom13g21680 pycom16g21400
rosa_chinensis	RchiOBHm_Chr4g0400191 RchiOBHm_Chr7g0191431 RchiOBHm_Chr7g0191541
rosa_laevigata	RLG00000004440 RLG00000009205
rosa_multiflora	Rmu_co8142490.1_g000001 Rmu_sc0000037.1_g000022 Rmu_sc0002661.1_g000008 Rmu_sc0003634.1_g000010 Rmu_sc0010599.1_g000007
rosa_roxburghii	Rroxscaffold_5G00345140
rosa_rugosa	Rorug04G0023500 Rorug04G0023600 Rorug04G0023700
rosa_samantha	Rh4AG098800 Rh4BG097100 Rh4CG108300 Rh4DG093800 Rh7AG119100 Rh7CG124100 Rh7DG122200
rosa_wichuraiana	Rw4G008210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	363
AccI	GTMKAC	1 cut(s)	75
AciI	CCGC	1 cut(s)	536
AclWI	GGATC	1 cut(s)	546
AcsI	RAATTY	2 cut(s)	89, 257
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	1 cut(s)	770
AgsI	TTSAA	8 cut(s)	63, 110, 161, 418, 614, 780, 929, 971
AjnI	CCWGG	1 cut(s)	594
AjuI	GAANNNNNNNTTGG	2 cut(s)	848, 880
AleI	CACNNNNGTG	1 cut(s)	17
AluBI	AGCT	8 cut(s)	53, 306, 334, 518, 649, 761, 877, 937
AluI	AGCT	8 cut(s)	53, 306, 334, 518, 649, 761, 877, 937
Alw21I	GWGCWC	2 cut(s)	336, 520
Alw26I	GTCTC	3 cut(s)	47, 214, 274
AlwI	GGATC	1 cut(s)	546
AoxI	GGCC	2 cut(s)	392, 563
ApeKI	GCWGC	5 cut(s)	303, 356, 359, 439, 874
ApoI	RAATTY	2 cut(s)	89, 257
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AspLEI	GCGC	2 cut(s)	364, 874
AspS9I	GGNCC	1 cut(s)	773
AsuHPI	GGTGA	4 cut(s)	34, 118, 182, 188
AvaII	GGWCC	1 cut(s)	773
BanII	GRGCYC	2 cut(s)	336, 520
BarI	GAAGNNNNNNTAC	2 cut(s)	410, 442
BauI	CACGAG	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	2 cut(s)	336, 520
BbvI	GCAGC	5 cut(s)	315, 343, 346, 451, 886
BccI	CCATC	4 cut(s)	227, 344, 574, 914
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	1 cut(s)	596
BclI	TGATCA	1 cut(s)	961
BcoDI	GTCTC	3 cut(s)	47, 214, 274
BfaI	CTAG	2 cut(s)	525, 792
BfmI	CTRYAG	3 cut(s)	48, 396, 723
BisI	GCNGC	5 cut(s)	304, 357, 360, 440, 875
BlsI	GCNGC	5 cut(s)	305, 358, 361, 441, 876
Bme1390I	CCNGG	1 cut(s)	596
Bme18I	GGWCC	1 cut(s)	773
BmgT120I	GGNCC	1 cut(s)	773
BmiI	GGNNCC	1 cut(s)	346
BmrFI	CCNGG	1 cut(s)	596
BmsI	GCATC	2 cut(s)	307, 568
BpiI	GAAGAC	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
BpuEI	CTTGAG	1 cut(s)	308
BsaI	GGTCTC	2 cut(s)	47, 274
BsaJI	CCNNGG	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	1 cut(s)	770
Bse1I	ACTGG	2 cut(s)	681, 788
Bse3DI	GCAATG	2 cut(s)	213, 300
BseBI	CCWGG	1 cut(s)	596
BseDI	CCNNGG	1 cut(s)	389
BseGI	GGATG	1 cut(s)	583
BseLI	CCNNNNNNNGG	1 cut(s)	770
BseMI	GCAATG	2 cut(s)	213, 300
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	2 cut(s)	681, 788
BseRI	GAGGAG	1 cut(s)	845
BseXI	GCAGC	5 cut(s)	315, 343, 346, 451, 886
BshFI	GGCC	2 cut(s)	394, 565
BsiHKAI	GWGCWC	2 cut(s)	336, 520
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	1 cut(s)	770
BsmAI	GTCTC	3 cut(s)	47, 214, 274
BsmFI	GGGAC	1 cut(s)	713
BsnI	GGCC	2 cut(s)	394, 565
Bso31I	GGTCTC	2 cut(s)	47, 274
Bsp1286I	GDGCHC	2 cut(s)	336, 520
Bsp143I	GATC	3 cut(s)	382, 538, 961
BspACI	CCGC	1 cut(s)	536
BspANI	GGCC	2 cut(s)	394, 565
BspCNI	CTCAG	1 cut(s)	284
BspHI	TCATGA	1 cut(s)	906
BspLI	GGNNCC	1 cut(s)	346
BspMAI	CTGCAG	1 cut(s)	727
BspPI	GGATC	1 cut(s)	546
BspTNI	GGTCTC	2 cut(s)	47, 274
BsrDI	GCAATG	2 cut(s)	213, 300
BsrI	ACTGG	2 cut(s)	681, 788
BssECI	CCNNGG	1 cut(s)	389
BssMI	GATC	3 cut(s)	382, 538, 961
BssSI	CACGAG	1 cut(s)	17
Bst2BI	CACGAG	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	596
Bst6I	CTCTTC	1 cut(s)	615
BstC8I	GCNNGC	6 cut(s)	55, 308, 312, 498, 502, 647
BstDEI	CTNAG	3 cut(s)	271, 456, 652
BstDSI	CCRYGG	1 cut(s)	389
BstF5I	GGATG	1 cut(s)	583
BstHHI	GCGC	2 cut(s)	364, 874
BstKTI	GATC	3 cut(s)	385, 541, 964
BstMAI	GTCTC	3 cut(s)	47, 214, 274
BstMBI	GATC	3 cut(s)	382, 538, 961
BstMWI	GCNNNNNNNGC	5 cut(s)	63, 506, 515, 646, 722
BstNI	CCWGG	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	594
BstSFI	CTRYAG	3 cut(s)	48, 396, 723
BstV1I	GCAGC	5 cut(s)	315, 343, 346, 451, 886
BstV2I	GAAGAC	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	394, 565
BtgI	CCRYGG	1 cut(s)	389
BtsCI	GGATG	1 cut(s)	583
Cac8I	GCNNGC	6 cut(s)	55, 308, 312, 498, 502, 647
CciI	TCATGA	1 cut(s)	906
CfoI	GCGC	2 cut(s)	364, 874
Cfr13I	GGNCC	1 cut(s)	773
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	4 cut(s)	659, 740, 907, 914
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	3 cut(s)	271, 456, 652
DpnI	GATC	3 cut(s)	384, 540, 963
DpnII	GATC	3 cut(s)	382, 538, 961
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
EciI	GGCGGA	1 cut(s)	551
Ecl136II	GAGCTC	2 cut(s)	334, 518
Eco24I	GRGCYC	2 cut(s)	336, 520
Eco31I	GGTCTC	2 cut(s)	47, 274
Eco32I	GATATC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	773
Eco53kI	GAGCTC	2 cut(s)	334, 518
EcoICRI	GAGCTC	2 cut(s)	334, 518
EcoO109I	RGGNCCY	1 cut(s)	773
EcoRII	CCWGG	1 cut(s)	594
EcoRV	GATATC	1 cut(s)	282
EcoT38I	GRGCYC	2 cut(s)	336, 520
FaeI	CATG	4 cut(s)	662, 743, 910, 917
FalI	AAGNNNNNCTT	4 cut(s)	20, 52, 921, 953
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	4 cut(s)	658, 739, 906, 913
FbaI	TGATCA	1 cut(s)	961
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	5 cut(s)	304, 357, 360, 440, 875
FokI	GGATG	1 cut(s)	590
FriOI	GRGCYC	2 cut(s)	336, 520
Fsp4HI	GCNGC	5 cut(s)	304, 357, 360, 440, 875
FspBI	CTAG	2 cut(s)	525, 792
FspI	TGCGCA	1 cut(s)	363
GlaI	GCGC	2 cut(s)	363, 873
GluI	GCNGC	5 cut(s)	304, 357, 360, 440, 875
HaeIII	GGCC	2 cut(s)	394, 565
HhaI	GCGC	2 cut(s)	364, 874
Hin1II	CATG	4 cut(s)	662, 743, 910, 917
Hin6I	GCGC	2 cut(s)	362, 872
HinP1I	GCGC	2 cut(s)	362, 872
HinfI	GANTC	4 cut(s)	137, 148, 161, 910
HphI	GGTGA	4 cut(s)	34, 118, 182, 188
Hpy166II	GTNNAC	2 cut(s)	76, 427
Hpy188I	TCNGA	4 cut(s)	142, 274, 382, 543
Hpy188III	TCNNGA	3 cut(s)	575, 792, 907
Hpy8I	GTNNAC	2 cut(s)	76, 427
HpyAV	CCTTC	8 cut(s)	69, 110, 196, 283, 759, 786, 843, 947
HpyCH4IV	ACGT	1 cut(s)	966
HpyCH4V	TGCA	4 cut(s)	320, 581, 725, 743
HpyF10VI	GCNNNNNNNGC	5 cut(s)	63, 506, 515, 646, 722
HpyF3I	CTNAG	3 cut(s)	271, 456, 652
HpySE526I	ACGT	1 cut(s)	966
Hsp92II	CATG	4 cut(s)	662, 743, 910, 917
HspAI	GCGC	2 cut(s)	362, 872
Ksp22I	TGATCA	1 cut(s)	961
Kzo9I	GATC	3 cut(s)	382, 538, 961
LmnI	GCTCC	2 cut(s)	515, 766
Lsp1109I	GCAGC	5 cut(s)	315, 343, 346, 451, 886
LweI	GCATC	2 cut(s)	307, 568
MaeI	CTAG	2 cut(s)	525, 792
MaeII	ACGT	1 cut(s)	966
MaeIII	GTNAC	1 cut(s)	898
MalI	GATC	3 cut(s)	384, 540, 963
MboI	GATC	3 cut(s)	382, 538, 961
MboII	GAAGA	5 cut(s)	17, 242, 377, 491, 602
MfeI	CAATTG	1 cut(s)	110
MhlI	GDGCHC	2 cut(s)	336, 520
MluCI	AATT	5 cut(s)	89, 110, 257, 443, 633
MlyI	GAGTC	1 cut(s)	919
MnlI	CCTC	5 cut(s)	18, 77, 95, 166, 823
MseI	TTAA	1 cut(s)	843
MslI	CAYNNNNRTG	3 cut(s)	17, 905, 918
MspA1I	CMGCKG	2 cut(s)	306, 877
MspR9I	CCNGG	1 cut(s)	596
MunI	CAATTG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	596
MwoI	GCNNNNNNNGC	5 cut(s)	63, 506, 515, 646, 722
NdeII	GATC	3 cut(s)	382, 538, 961
NlaIII	CATG	4 cut(s)	662, 743, 910, 917
NlaIV	GGNNCC	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	898
NsbI	TGCGCA	1 cut(s)	363
OliI	CACNNNNGTG	1 cut(s)	17
PagI	TCATGA	1 cut(s)	906
PfeI	GAWTC	3 cut(s)	137, 148, 161
PkrI	GCNGC	5 cut(s)	305, 358, 361, 441, 876
PleI	GAGTC	1 cut(s)	918
PpsI	GAGTC	1 cut(s)	918
PpuMI	RGGWCCY	1 cut(s)	773
Psp124BI	GAGCTC	2 cut(s)	336, 520
Psp5II	RGGWCCY	1 cut(s)	773
Psp6I	CCWGG	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	594
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	1 cut(s)	773
PspPPI	RGGWCCY	1 cut(s)	773
PsrI	GAACNNNNNNTAC	2 cut(s)	361, 393
PstI	CTGCAG	1 cut(s)	727
PvuII	CAGCTG	2 cut(s)	306, 877
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	3 cut(s)	17, 905, 918
SacI	GAGCTC	2 cut(s)	336, 520
SaqAI	TTAA	1 cut(s)	843
SatI	GCNGC	5 cut(s)	304, 357, 360, 440, 875
Sau3AI	GATC	3 cut(s)	382, 538, 961
Sau96I	GGNCC	1 cut(s)	773
SchI	GAGTC	1 cut(s)	919
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	2 cut(s)	336, 520
SfaNI	GCATC	2 cut(s)	307, 568
SfcI	CTRYAG	3 cut(s)	48, 396, 723
SinI	GGWCC	1 cut(s)	773
SmiMI	CAYNNNNRTG	3 cut(s)	17, 905, 918
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	5 cut(s)	89, 110, 257, 443, 633
SsiI	CCGC	1 cut(s)	536
SspI	AATATT	1 cut(s)	860
SspMI	CTAG	2 cut(s)	525, 792
SstI	GAGCTC	2 cut(s)	336, 520
StyD4I	CCNGG	1 cut(s)	594
TaiI	ACGT	1 cut(s)	969
TaqI	TCGA	1 cut(s)	477
TasI	AATT	5 cut(s)	89, 110, 257, 443, 633
TatI	WGTACW	1 cut(s)	426
TfiI	GAWTC	3 cut(s)	137, 148, 161
Tru1I	TTAA	1 cut(s)	843
Tru9I	TTAA	1 cut(s)	843
TseFI	GTSAC	1 cut(s)	898
TseI	GCWGC	5 cut(s)	303, 356, 359, 439, 874
Tsp45I	GTSAC	1 cut(s)	898
TspDTI	ATGAA	6 cut(s)	270, 302, 570, 708, 741, 966
TspGWI	ACGGA	2 cut(s)	141, 378
VpaK11BI	GGWCC	1 cut(s)	773
XapI	RAATTY	2 cut(s)	89, 257
XbaI	TCTAGA	1 cut(s)	791
XmiI	GTMKAC	1 cut(s)	75
XspI	CTAG	2 cut(s)	525, 792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.