Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000037.1

Orthogroup ID

OG0003603

Physical Location & Seq

Genomic Coordinates Reverse (-)

133010 .. 135817

Gene Structure 2808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000037.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atggataaaattccgtatgttgaatctggtgagtacgtggcctataataatgagaagggtggcgtgattgagagactgaaagaagatggcattgttgatctggacactgaattccaatcagtcccggaatggatatctatgaaggccatggttagctcctggcttgctgatgcaatcaagtatgagctctgggtgggaactgatggtacttctgcccaaactatatattgttctgatcttccgtggccaataggaaaagttttgttcttgaagcaactgtacaaagtcaagcagcaacttgggattactaaggacaatgctgaagaaatagaagaacagatatacaagagagccagcattgcgtttggagctctgtctagtagattgggggatcaaatgtttttatatgaaaacaggccgtcaagtttggatgctgtctttttgagccaggcacttatcactcttcaagcgttaccagaaacatcaattctccggagcaagctcttagaacatgagaacctcgttgggtatgccagtagggttaatatggagtttgttgaagcgagtacttcatcttcagtcccaaactcccatgcaaatccttcatcatcagctccgagaagaggtccttcaaactggcgttctaagcccaagaccaaacccaaaagggaaaaaacaaaggaggagaaagattttaagagaagggccaagtattttttggtagcacagctggtttcggttgtactttttgtcactctcatgggtcaagttgatggggttgaggttgagcttgatgatgatgatgaaggctttgattacaatgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009536 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_6 GST_N_4

Protein Analysis

275

Amino Acids

31.04

Weight (kDa)

5.03

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19080 AT2G19080
fragaria_vesca	FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590
malus_domestica	MD13G1245600.v1.1
prunus_persica	Prupe.1G079200_v2.0.a1
pyrus_communis	pycom13g21680 pycom16g21400
rosa_chinensis	RchiOBHm_Chr4g0400191 RchiOBHm_Chr7g0191431 RchiOBHm_Chr7g0191541
rosa_laevigata	RLG00000004440 RLG00000009205
rosa_multiflora	Rmu_co8142490.1_g000001 Rmu_sc0000037.1_g000022 Rmu_sc0002661.1_g000008 Rmu_sc0003634.1_g000010 Rmu_sc0010599.1_g000007
rosa_roxburghii	Rroxscaffold_5G00345140
rosa_rugosa	Rorug04G0023500 Rorug04G0023600 Rorug04G0023700
rosa_samantha	Rh4AG098800 Rh4BG097100 Rh4CG108300 Rh4DG093800 Rh7AG119100 Rh7CG124100 Rh7DG122200
rosa_wichuraiana	Rw4G008210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	492
AclWI	GGATC	1 cut(s)	399
AcoI	YGGCCR	1 cut(s)	245
AcsI	RAATTY	2 cut(s)	9, 110
AcuI	CTGAAG	2 cut(s)	342, 561
AfaI	GTAC	5 cut(s)	35, 208, 281, 568, 744
AfiI	CCNNNNNNNGG	1 cut(s)	623
AgsI	TTSAA	5 cut(s)	23, 271, 467, 560, 633
AjnI	CCWGG	2 cut(s)	158, 447
AluBI	AGCT	7 cut(s)	156, 187, 371, 502, 614, 730, 790
AluI	AGCT	7 cut(s)	156, 187, 371, 502, 614, 730, 790
Alw21I	GWGCWC	2 cut(s)	189, 373
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	1 cut(s)	399
Aor13HI	TCCGGA	1 cut(s)	492
AoxI	GGCC	5 cut(s)	39, 144, 245, 416, 705
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	2 cut(s)	9, 110
AspS9I	GGNCC	2 cut(s)	626, 705
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	626
BalI	TGGCCA	1 cut(s)	247
BanII	GRGCYC	2 cut(s)	189, 373
BarI	GAAGNNNNNNTAC	4 cut(s)	263, 295, 559, 591
Bbv12I	GWGCWC	2 cut(s)	189, 373
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	3 cut(s)	80, 197, 767
BceAI	ACGGC	1 cut(s)	403
BciT130I	CCWGG	2 cut(s)	160, 449
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	1 cut(s)	378
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
BmcAI	AGTACT	1 cut(s)	568
Bme1390I	CCNGG	3 cut(s)	125, 160, 449
Bme18I	GGWCC	1 cut(s)	626
BmgT120I	GGNCC	2 cut(s)	626, 705
BmrFI	CCNGG	3 cut(s)	125, 160, 449
BmsI	GCATC	2 cut(s)	160, 421
BpuMI	CCSGG	1 cut(s)	125
BsaAI	YACGTR	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	147, 242
BsaWI	WCCGGW	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	1 cut(s)	623
Bse1I	ACTGG	2 cut(s)	534, 641
Bse3DI	GCAATG	1 cut(s)	357
BseAI	TCCGGA	1 cut(s)	492
BseBI	CCWGG	2 cut(s)	160, 449
BseDI	CCNNGG	2 cut(s)	147, 242
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	1 cut(s)	623
BseMI	GCAATG	1 cut(s)	357
BseNI	ACTGG	2 cut(s)	534, 641
BseRI	GAGGAG	1 cut(s)	698
BseXI	GCAGC	1 cut(s)	304
BshFI	GGCC	5 cut(s)	41, 146, 247, 418, 707
BsiHKAI	GWGCWC	2 cut(s)	189, 373
BsiSI	CCGG	2 cut(s)	125, 493
BslFI	GGGAC	2 cut(s)	107, 566
BslI	CCNNNNNNNGG	1 cut(s)	623
BsmAI	GTCTC	1 cut(s)	67
BsmFI	GGGAC	2 cut(s)	107, 566
BsnI	GGCC	5 cut(s)	41, 146, 247, 418, 707
Bsp1286I	GDGCHC	2 cut(s)	189, 373
Bsp13I	TCCGGA	1 cut(s)	492
Bsp1407I	TGTACA	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	97, 235, 391
Bsp19I	CCATGG	1 cut(s)	147
BspANI	GGCC	5 cut(s)	41, 146, 247, 418, 707
BspEI	TCCGGA	1 cut(s)	492
BspPI	GGATC	1 cut(s)	399
BsrDI	GCAATG	1 cut(s)	357
BsrGI	TGTACA	1 cut(s)	279
BsrI	ACTGG	2 cut(s)	534, 641
BssECI	CCNNGG	2 cut(s)	147, 242
BssMI	GATC	3 cut(s)	97, 235, 391
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	2 cut(s)	160, 449
Bst4CI	ACNGT	1 cut(s)	279
Bst6I	CTCTTC	2 cut(s)	468, 616
BstAUI	TGTACA	1 cut(s)	279
BstBAI	YACGTR	1 cut(s)	37
BstC8I	GCNNGC	3 cut(s)	165, 355, 500
BstDEI	CTNAG	3 cut(s)	309, 505, 645
BstDSI	CCRYGG	2 cut(s)	147, 242
BstF5I	GGATG	1 cut(s)	436
BstKTI	GATC	3 cut(s)	100, 238, 394
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	3 cut(s)	97, 235, 391
BstMWI	GCNNNNNNNGC	3 cut(s)	359, 368, 646
BstNI	CCWGG	2 cut(s)	160, 449
BstSCI	CCNGG	3 cut(s)	123, 158, 447
BstV1I	GCAGC	1 cut(s)	304
BsuRI	GGCC	5 cut(s)	41, 146, 247, 418, 707
BtgI	CCRYGG	2 cut(s)	147, 242
BtsCI	GGATG	1 cut(s)	436
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	3 cut(s)	165, 355, 500
Cfr13I	GGNCC	2 cut(s)	626, 705
Csp6I	GTAC	5 cut(s)	34, 207, 280, 567, 743
CviAII	CATG	4 cut(s)	148, 512, 593, 760
CviQI	GTAC	5 cut(s)	34, 207, 280, 567, 743
DdeI	CTNAG	3 cut(s)	309, 505, 645
DpnI	GATC	3 cut(s)	99, 237, 393
DpnII	GATC	3 cut(s)	97, 235, 391
EaeI	YGGCCR	1 cut(s)	245
Eam1104I	CTCTTC	2 cut(s)	468, 616
EarI	CTCTTC	2 cut(s)	468, 616
Ecl136II	GAGCTC	2 cut(s)	187, 371
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	2 cut(s)	189, 373
Eco32I	GATATC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	626
Eco53kI	GAGCTC	2 cut(s)	187, 371
Eco57I	CTGAAG	2 cut(s)	342, 561
EcoICRI	GAGCTC	2 cut(s)	187, 371
EcoO109I	RGGNCCY	1 cut(s)	626
EcoRI	GAATTC	1 cut(s)	110
EcoRII	CCWGG	2 cut(s)	158, 447
EcoRV	GATATC	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	2 cut(s)	189, 373
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	4 cut(s)	151, 515, 596, 763
FalI	AAGNNNNNCTT	2 cut(s)	613, 645
FaqI	GGGAC	2 cut(s)	107, 566
FatI	CATG	4 cut(s)	147, 511, 592, 759
Fnu4HI	GCNGC	1 cut(s)	293
FokI	GGATG	1 cut(s)	443
FriOI	GRGCYC	2 cut(s)	189, 373
Fsp4HI	GCNGC	1 cut(s)	293
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	1 cut(s)	293
HaeIII	GGCC	5 cut(s)	41, 146, 247, 418, 707
HapII	CCGG	2 cut(s)	125, 493
Hin1II	CATG	4 cut(s)	151, 515, 596, 763
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	2 cut(s)	125, 493
HphI	GGTGA	1 cut(s)	41
Hpy188I	TCNGA	2 cut(s)	235, 618
Hpy188III	TCNNGA	3 cut(s)	101, 268, 493
HpyAV	CCTTC	6 cut(s)	49, 136, 612, 639, 696, 800
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	2 cut(s)	173, 596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	359, 368, 646
HpyF3I	CTNAG	3 cut(s)	309, 505, 645
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	4 cut(s)	151, 515, 596, 763
Kpn2I	TCCGGA	1 cut(s)	492
Kzo9I	GATC	3 cut(s)	97, 235, 391
LmnI	GCTCC	4 cut(s)	161, 368, 495, 619
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	2 cut(s)	160, 421
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	2 cut(s)	471, 751
MalI	GATC	3 cut(s)	99, 237, 393
MboI	GATC	3 cut(s)	97, 235, 391
MboII	GAAGA	7 cut(s)	95, 230, 335, 344, 455, 567, 633
MhlI	GDGCHC	2 cut(s)	189, 373
MlsI	TGGCCA	1 cut(s)	247
MluCI	AATT	3 cut(s)	9, 110, 486
MluNI	TGGCCA	1 cut(s)	247
MnlI	CCTC	4 cut(s)	530, 617, 676, 775
Mox20I	TGGCCA	1 cut(s)	247
MroI	TCCGGA	1 cut(s)	492
MscI	TGGCCA	1 cut(s)	247
MseI	TTAA	2 cut(s)	543, 696
MslI	CAYNNNNRTG	1 cut(s)	758
Msp20I	TGGCCA	1 cut(s)	247
MspA1I	CMGCKG	1 cut(s)	730
MspI	CCGG	2 cut(s)	125, 493
MspR9I	CCNGG	3 cut(s)	125, 160, 449
MvaI	CCWGG	2 cut(s)	160, 449
MwoI	GCNNNNNNNGC	3 cut(s)	359, 368, 646
NciI	CCSGG	1 cut(s)	125
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	3 cut(s)	97, 235, 391
NlaIII	CATG	4 cut(s)	151, 515, 596, 763
NmuCI	GTSAC	1 cut(s)	751
PfeI	GAWTC	1 cut(s)	23
PfoI	TCCNGGA	1 cut(s)	123
PkrI	GCNGC	1 cut(s)	294
Ppu21I	YACGTR	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	626
Psp124BI	GAGCTC	2 cut(s)	189, 373
Psp5II	RGGWCCY	1 cut(s)	626
Psp6I	CCWGG	2 cut(s)	158, 447
PspGI	CCWGG	2 cut(s)	158, 447
PspPI	GGNCC	2 cut(s)	626, 705
PspPPI	RGGWCCY	1 cut(s)	626
PsrI	GAACNNNNNNTAC	2 cut(s)	190, 222
PvuII	CAGCTG	1 cut(s)	730
RsaI	GTAC	5 cut(s)	35, 208, 281, 568, 744
RsaNI	GTAC	5 cut(s)	34, 207, 280, 567, 743
RseI	CAYNNNNRTG	1 cut(s)	758
SacI	GAGCTC	2 cut(s)	189, 373
SaqAI	TTAA	2 cut(s)	543, 696
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	3 cut(s)	97, 235, 391
Sau96I	GGNCC	2 cut(s)	626, 705
ScaI	AGTACT	1 cut(s)	568
ScrFI	CCNGG	3 cut(s)	125, 160, 449
SduI	GDGCHC	2 cut(s)	189, 373
SfaNI	GCATC	2 cut(s)	160, 421
SinI	GGWCC	1 cut(s)	626
SmiMI	CAYNNNNRTG	1 cut(s)	758
Sse9I	AATT	3 cut(s)	9, 110, 486
SspMI	CTAG	1 cut(s)	378
SstI	GAGCTC	2 cut(s)	189, 373
StyD4I	CCNGG	3 cut(s)	123, 158, 447
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	279
TaiI	ACGT	1 cut(s)	39
TasI	AATT	3 cut(s)	9, 110, 486
TatI	WGTACW	3 cut(s)	279, 566, 742
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	2 cut(s)	543, 696
Tru9I	TTAA	2 cut(s)	543, 696
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	751
TseI	GCWGC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	751
TspDTI	ATGAA	5 cut(s)	155, 423, 561, 594, 819
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	626
XapI	RAATTY	2 cut(s)	9, 110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	715
XspI	CTAG	1 cut(s)	378
ZrmI	AGTACT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.