Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003603

Physical Location & Seq

Genomic Coordinates Reverse (-)

3356118 .. 3358135

Gene Structure 2018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0023500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAGCTTCCTCAACGTACGCACCAATGAGTCGGTAGCCCTAGCTTGCTTAACCTTTACCGACATTGTTAAGTGCCCTGGAAAAAAAGTGGGAAGCAATGTCGGGTTGATTCTTGATGTTCCGAGCAGTAATCTTGGCAGAAGCAAAAGAAAATGGCATTCTGCTTTGATTACCATCTACTGCTCTAGAGCCTTCCTCTCTTTACGACCTTCTACTCTTCCCAAACATACCAACTCCACATTCACGTCTCGCACCCTCTCTTACCCCATTGTTAGGGTCGAGCCAGTCTCGGACCCAGCCACTAATGGATTCAAAGCAGACCAAAAAAGCCTCACTGAGCTTGTGAAGGAGAAAAATCTCAACAAGCTACTGGAGCTTGGAGGGGTTGACGAAGTAGCATCAGCTCTCAAAACTGATGCAGAGCATGGAATCAATGGTGATGATGCAGAAGACATTGCGCGCAGACACGAAGCATTTGGTTCCAACACATACCAGAAACCTCCAACGCATGGATTCCTCCATTTTGTGTTTGAAGCCTTCAAAGAACTCACAATCCTAATCCTCTTGGGATGTGCTGCGCTTTCTCTTTGTATCAGCATCAAAGAACAAGGATTGAAAGAAGGTTGGATTGACGGTGGAAGCATTTGTCTTGCAGTCATTCTGGTCATTTCTGTTTCAGCCATAAGCAACTACAGACAGAGCAGACAGTTTGACAAGCTGTCGAAAGTCACCAACAATCTCCAAATTGAGGCTGTGAGAAATGGAAGGCGCCAACTGATTTCAATATTCGAAATTGTGGTGGGTGATGTCATCTGCTTGAAAATTGGAGACCAAGTTCCAGCTGATGGATTACTTATCGAAGGCCACTCTGTATCAGTAGACGAATCAAGCATAACAGGGGAGAACGACCATGTTGAGATTAGTGTCACTGAGAATCCTTTCTTGTTTTCTGGGACTAAAATCGCTGATGGTTATGGCCGGATGCTTGTCATATCAGTCGGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009536 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_6 GST_N_4

Protein Analysis

335

Amino Acids

36.45

Weight (kDa)

6.46

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	126 - 195	2.3e-14	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	250 - 335	2.7e-18	P-type ATPase actuator domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19080 AT2G19080
fragaria_vesca	FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590
malus_domestica	MD13G1245600.v1.1
prunus_persica	Prupe.1G079200_v2.0.a1
pyrus_communis	pycom13g21680 pycom16g21400
rosa_chinensis	RchiOBHm_Chr4g0400191 RchiOBHm_Chr7g0191431 RchiOBHm_Chr7g0191541
rosa_laevigata	RLG00000004440 RLG00000009205
rosa_multiflora	Rmu_co8142490.1_g000001 Rmu_sc0000037.1_g000022 Rmu_sc0002661.1_g000008 Rmu_sc0003634.1_g000010 Rmu_sc0010599.1_g000007
rosa_roxburghii	Rroxscaffold_5G00345140
rosa_rugosa	Rorug04G0023500 Rorug04G0023600 Rorug04G0023700
rosa_samantha	Rh4AG098800 Rh4BG097100 Rh4CG108300 Rh4DG093800 Rh7AG119100 Rh7CG124100 Rh7DG122200
rosa_wichuraiana	Rw4G008210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	768
AccB7I	CCANNNNNTGG	2 cut(s)	509, 845
AccI	GTMKAC	1 cut(s)	879
AccII	CGCG	1 cut(s)	460
AcoI	YGGCCR	1 cut(s)	976
AcyI	GRCGYC	1 cut(s)	769
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	4 cut(s)	273, 509, 748, 845
AgsI	TTSAA	6 cut(s)	313, 533, 541, 616, 783, 820
AhdI	GACNNNNNGTC	1 cut(s)	718
AjiI	CACGTC	1 cut(s)	246
AjnI	CCWGG	1 cut(s)	76
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AloI	GAACNNNNNNTCC	4 cut(s)	537, 569, 819, 851
AluBI	AGCT	8 cut(s)	6, 44, 340, 367, 376, 404, 718, 842
AluI	AGCT	8 cut(s)	6, 44, 340, 367, 376, 404, 718, 842
Alw26I	GTCTC	3 cut(s)	252, 292, 822
AoxI	GGCC	2 cut(s)	862, 976
ApeKI	GCWGC	1 cut(s)	575
Asp700I	GAANNNNTTC	1 cut(s)	938
AspLEI	GCGC	4 cut(s)	460, 462, 580, 771
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	3 cut(s)	449, 721, 815
AsuII	TTCGAA	1 cut(s)	789
AvaII	GGWCC	1 cut(s)	292
BaeGI	GKGCMC	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	768
BbsI	GAAGAC	1 cut(s)	456
BbvI	GCAGC	1 cut(s)	562
BccI	CCATC	3 cut(s)	182, 839, 962
BciT130I	CCWGG	1 cut(s)	78
BcoDI	GTCTC	3 cut(s)	252, 292, 822
BfaI	CTAG	2 cut(s)	41, 186
BfmI	CTRYAG	1 cut(s)	691
BfoI	RGCGCY	1 cut(s)	772
BisI	GCNGC	1 cut(s)	576
BlsI	GCNGC	1 cut(s)	577
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	292
BmeRI	GACNNNNNGTC	1 cut(s)	718
BmgBI	CACGTC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	3 cut(s)	294, 481, 770
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	5 cut(s)	406, 407, 433, 606, 972
BpiI	GAAGAC	1 cut(s)	456
BplI	GAGNNNNNCTC	4 cut(s)	180, 212, 272, 304
BpmI	CTGGAG	1 cut(s)	392
Bpu14I	TTCGAA	1 cut(s)	789
BsaBI	GATNNNNATC	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	769
BsaI	GGTCTC	1 cut(s)	822
BsaJI	CCNNGG	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	819, 849
Bsc4I	CCNNNNNNNGG	4 cut(s)	273, 509, 748, 845
Bse1I	ACTGG	2 cut(s)	284, 375
Bse3DI	GCAATG	2 cut(s)	103, 453
Bse8I	GATNNNNATC	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	3 cut(s)	575, 987, 1008
BseJI	GATNNNNATC	1 cut(s)	173
BseLI	CCNNNNNNNGG	4 cut(s)	273, 509, 748, 845
BseMI	GCAATG	2 cut(s)	103, 453
BseMII	CTCAG	2 cut(s)	327, 921
BseNI	ACTGG	2 cut(s)	284, 375
BsePI	GCGCGC	1 cut(s)	458
BseSI	GKGCMC	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	562
BseYI	CCCAGC	1 cut(s)	295
Bsh1236I	CGCG	1 cut(s)	460
BshFI	GGCC	2 cut(s)	864, 978
BshNI	GGYRCC	1 cut(s)	768
BsiSI	CCGG	1 cut(s)	979
BsiWI	CGTACG	1 cut(s)	16
BslFI	GGGAC	1 cut(s)	967
BslI	CCNNNNNNNGG	4 cut(s)	273, 509, 748, 845
BsmAI	GTCTC	3 cut(s)	252, 292, 822
BsmBI	CGTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	967
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	2 cut(s)	864, 978
Bso31I	GGTCTC	1 cut(s)	822
Bsp119I	TTCGAA	1 cut(s)	789
Bsp1286I	GDGCHC	1 cut(s)	77
BspANI	GGCC	2 cut(s)	864, 978
BspCNI	CTCAG	2 cut(s)	328, 922
BspFNI	CGCG	1 cut(s)	460
BspLI	GGNNCC	3 cut(s)	294, 481, 770
BspT104I	TTCGAA	1 cut(s)	789
BspT107I	GGYRCC	1 cut(s)	768
BspTNI	GGTCTC	1 cut(s)	822
BsrDI	GCAATG	2 cut(s)	103, 453
BsrI	ACTGG	2 cut(s)	284, 375
BssECI	CCNNGG	1 cut(s)	76
BssHII	GCGCGC	1 cut(s)	458
BssNI	GRCGYC	1 cut(s)	769
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	635, 708
Bst6I	CTCTTC	1 cut(s)	222
BstACI	GRCGYC	1 cut(s)	769
BstBI	TTCGAA	1 cut(s)	789
BstC8I	GCNNGC	2 cut(s)	46, 460
BstDEI	CTNAG	2 cut(s)	336, 930
BstF5I	GGATG	3 cut(s)	575, 987, 1008
BstFNI	CGCG	1 cut(s)	460
BstH2I	RGCGCY	1 cut(s)	772
BstHHI	GCGC	4 cut(s)	460, 462, 580, 771
BstMAI	GTCTC	3 cut(s)	252, 292, 822
BstMWI	GCNNNNNNNGC	1 cut(s)	373
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstSFI	CTRYAG	1 cut(s)	691
BstSLI	GKGCMC	1 cut(s)	77
BstUI	CGCG	1 cut(s)	460
BstV1I	GCAGC	1 cut(s)	562
BstV2I	GAAGAC	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	864, 978
BtrI	CACGTC	1 cut(s)	246
BtsCI	GGATG	3 cut(s)	575, 987, 1008
BtsIMutI	CAGTG	2 cut(s)	333, 927
Cac8I	GCNNGC	2 cut(s)	46, 460
CfoI	GCGC	4 cut(s)	460, 462, 580, 771
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	3 cut(s)	425, 509, 911
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	2 cut(s)	336, 930
DinI	GGCGCC	1 cut(s)	770
DriI	GACNNNNNGTC	1 cut(s)	718
EaeI	YGGCCR	1 cut(s)	976
Eam1104I	CTCTTC	1 cut(s)	222
Eam1105I	GACNNNNNGTC	1 cut(s)	718
EarI	CTCTTC	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	822
Eco47I	GGWCC	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	76
EgeI	GGCGCC	1 cut(s)	770
EheI	GGCGCC	1 cut(s)	770
Esp3I	CGTCTC	1 cut(s)	252
FaeI	CATG	3 cut(s)	428, 512, 914
FaiI	YATR	9 cut(s)	228, 426, 490, 510, 683, 893, 912, 975, 992
FaqI	GGGAC	1 cut(s)	967
FatI	CATG	3 cut(s)	424, 508, 910
FblI	GTMKAC	1 cut(s)	879
Fnu4HI	GCNGC	1 cut(s)	576
FokI	GGATG	2 cut(s)	582, 994
Fsp4HI	GCNGC	1 cut(s)	576
FspBI	CTAG	2 cut(s)	41, 186
GlaI	GCGC	4 cut(s)	459, 461, 579, 770
GluI	GCNGC	1 cut(s)	576
GsaI	CCCAGC	1 cut(s)	299
GsuI	CTGGAG	1 cut(s)	392
HaeII	RGCGCY	1 cut(s)	772
HaeIII	GGCC	2 cut(s)	864, 978
HapII	CCGG	1 cut(s)	979
HhaI	GCGC	4 cut(s)	460, 462, 580, 771
Hin1I	GRCGYC	1 cut(s)	769
Hin1II	CATG	3 cut(s)	428, 512, 914
Hin6I	GCGC	4 cut(s)	458, 460, 578, 769
HinP1I	GCGC	4 cut(s)	458, 460, 578, 769
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	7 cut(s)	29, 109, 309, 429, 513, 884, 934
HpaII	CCGG	1 cut(s)	979
HphI	GGTGA	3 cut(s)	449, 721, 815
Hpy166II	GTNNAC	2 cut(s)	388, 880
Hpy188I	TCNGA	2 cut(s)	123, 292
Hpy188III	TCNNGA	3 cut(s)	113, 186, 1000
Hpy8I	GTNNAC	2 cut(s)	388, 880
HpyAV	CCTTC	7 cut(s)	202, 219, 340, 547, 614, 759, 854
HpyCH4III	ACNGT	2 cut(s)	635, 708
HpyCH4IV	ACGT	2 cut(s)	15, 245
HpyCH4V	TGCA	3 cut(s)	419, 446, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	373
HpyF3I	CTNAG	2 cut(s)	336, 930
HpySE526I	ACGT	2 cut(s)	15, 245
Hsp92I	GRCGYC	1 cut(s)	769
Hsp92II	CATG	3 cut(s)	428, 512, 914
HspAI	GCGC	4 cut(s)	458, 460, 578, 769
KasI	GGCGCC	1 cut(s)	768
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	1 cut(s)	562
LweI	GCATC	5 cut(s)	406, 407, 433, 606, 972
MaeI	CTAG	2 cut(s)	41, 186
MaeII	ACGT	2 cut(s)	15, 245
MaeIII	GTNAC	2 cut(s)	727, 925
MboII	GAAGA	2 cut(s)	209, 461
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	3 cut(s)	744, 792, 822
Mly113I	GGCGCC	1 cut(s)	769
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	3 cut(s)	507, 527, 605
MnlI	CCTC	9 cut(s)	20, 206, 266, 341, 374, 510, 527, 572, 742
MroXI	GAANNNNTTC	1 cut(s)	938
MseI	TTAA	2 cut(s)	50, 69
MspA1I	CMGCKG	1 cut(s)	842
MspI	CCGG	1 cut(s)	979
MspR9I	CCNGG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	78
MvnI	CGCG	1 cut(s)	460
MwoI	GCNNNNNNNGC	1 cut(s)	373
NarI	GGCGCC	1 cut(s)	769
NlaIII	CATG	3 cut(s)	428, 512, 914
NlaIV	GGNNCC	3 cut(s)	294, 481, 770
NmuCI	GTSAC	2 cut(s)	727, 925
NspV	TTCGAA	1 cut(s)	789
PauI	GCGCGC	1 cut(s)	458
PctI	GAATGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	938
PfeI	GAWTC	6 cut(s)	109, 309, 429, 513, 884, 934
Pfl23II	CGTACG	1 cut(s)	16
PflMI	CCANNNNNTGG	2 cut(s)	509, 845
PkrI	GCNGC	1 cut(s)	577
PleI	GAGTC	1 cut(s)	37
PluTI	GGCGCC	1 cut(s)	772
PpsI	GAGTC	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	76
PspFI	CCCAGC	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	76
PspLI	CGTACG	1 cut(s)	16
PspN4I	GGNNCC	3 cut(s)	294, 481, 770
PspPI	GGNCC	1 cut(s)	292
PteI	GCGCGC	1 cut(s)	458
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	50, 69
SatI	GCNGC	1 cut(s)	576
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	77
SfaNI	GCATC	5 cut(s)	406, 407, 433, 606, 972
SfcI	CTRYAG	1 cut(s)	691
SfoI	GGCGCC	1 cut(s)	770
SfuI	TTCGAA	1 cut(s)	789
SinI	GGWCC	1 cut(s)	292
Sse9I	AATT	3 cut(s)	744, 792, 822
SspDI	GGCGCC	1 cut(s)	768
SspI	AATATT	1 cut(s)	786
SspMI	CTAG	2 cut(s)	41, 186
StyD4I	CCNGG	1 cut(s)	76
TaaI	ACNGT	2 cut(s)	635, 708
TaiI	ACGT	2 cut(s)	18, 248
TaqI	TCGA	4 cut(s)	279, 722, 789, 858
TasI	AATT	3 cut(s)	744, 792, 822
TfiI	GAWTC	6 cut(s)	109, 309, 429, 513, 884, 934
Tru1I	TTAA	2 cut(s)	50, 69
Tru9I	TTAA	2 cut(s)	50, 69
TscAI	CASTG	2 cut(s)	340, 934
TseFI	GTSAC	2 cut(s)	727, 925
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	2 cut(s)	727, 925
TspRI	CASTG	2 cut(s)	340, 934
Van91I	CCANNNNNTGG	2 cut(s)	509, 845
VpaK11BI	GGWCC	1 cut(s)	292
XbaI	TCTAGA	1 cut(s)	185
XmiI	GTMKAC	1 cut(s)	879
XmnI	GAANNNNTTC	1 cut(s)	938
XspI	CTAG	2 cut(s)	41, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.