Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003603

Physical Location & Seq

Genomic Coordinates Forward (+)

59385555 .. 59389234

Gene Structure 3680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004440

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAAGACTACTCTCTCGTGGTGAGGAAGCCCTGTTTCGGCCTCCCTACTGCTTGCCCTTCATGCTTGCCTGTCTACTTCTACCTCAAATTCTCTGACATTCCCTTTAAATTGGACTATAATCTTACCTACCCTGATTCTGATAAAATTCCGTATGTTGAATCTGGTGAGTACGTGGCCTATAATAATGAGAAGGGTGGCGTCATTGAGACACTAATAGAAGATGGCATTGTTGATTTGGACACTGAATTTCATTCAGTCCCGGAGTGGATACCCATGAATGCTATGGTTAACTCCTGGCTTGCTGATGCAATCAAGTACGAGCTCTGGGTGGGAACTGATGGTACATCTGCCCAAAGTATATATTGTTCTGATCTTCCATGGCCAATAGGAAAAATTTTGTTCTTGAAGCAAGTGTACAATGTAAAGAAGCAACTTGGGATTACTAAGGACAATGCCGAGGAAATGGAAGACCAGATATACAAGAGAGCCAACAGTGCGTTTGGAGCTCTGTCTAGTAGCTTGGTGGATCAGATGTTTTTATATGGAAACAGGCCATCAAGTTTGGATGCAGTCTTTCTGAGCCAGGCACTTATCACTCTTCAAGCATTACCAGAAACATCAATTCTCCGTAGCAAGCTCTTAGAACATGAGAACCTGGTTGGGTATGCCAATAGGACTAAAATGGCGTTTCTTGATGCGGGTGCTTCATCTTCAGTCCCAAACTTCCATGCAAACCCTTCATCATCAGCTCCGAGAAAAGGTCCTTCAAACTGGCGTTCTAAGCCCAAGACCAAGACCAAAACCAAAAGGGAAAAAACAAAGGAGGAAGATTTTAAGAGAAGGGCCAAATATGTTTTTATAGCACAGCTGGTTTCAGTTGTACTTTATGTCACTCTCATGGATCAAACAGATGGGTTTGCCGTTGAGGATGATGATGAAGGCTTTGATTACAATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009536 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_6 GST_N_4

Protein Analysis

321

Amino Acids

36.09

Weight (kDa)

5.0

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_4	PF17172	20 - 113	9.3e-18	Glutathione S-transferase N-terminal domain
GST_C_6	PF17171	164 - 226	1.7e-12	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19080 AT2G19080
fragaria_vesca	FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590
malus_domestica	MD13G1245600.v1.1
prunus_persica	Prupe.1G079200_v2.0.a1
pyrus_communis	pycom13g21680 pycom16g21400
rosa_chinensis	RchiOBHm_Chr4g0400191 RchiOBHm_Chr7g0191431 RchiOBHm_Chr7g0191541
rosa_laevigata	RLG00000004440 RLG00000009205
rosa_multiflora	Rmu_co8142490.1_g000001 Rmu_sc0000037.1_g000022 Rmu_sc0002661.1_g000008 Rmu_sc0003634.1_g000010 Rmu_sc0010599.1_g000007
rosa_roxburghii	Rroxscaffold_5G00345140
rosa_rugosa	Rorug04G0023500 Rorug04G0023600 Rorug04G0023700
rosa_samantha	Rh4AG098800 Rh4BG097100 Rh4CG108300 Rh4DG093800 Rh7AG119100 Rh7CG124100 Rh7DG122200
rosa_wichuraiana	Rw4G008210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	75
AciI	CCGC	1 cut(s)	701
AclWI	GGATC	2 cut(s)	537, 912
AcoI	YGGCCR	1 cut(s)	383
AcsI	RAATTY	4 cut(s)	89, 147, 248, 396
AcuI	CTGAAG	1 cut(s)	699
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	5 cut(s)	173, 320, 346, 419, 885
AfiI	CCNNNNNNNGG	2 cut(s)	38, 761
AgsI	TTSAA	4 cut(s)	161, 409, 605, 771
AjnI	CCWGG	3 cut(s)	296, 585, 657
AluBI	AGCT	6 cut(s)	325, 509, 522, 640, 752, 871
AluI	AGCT	6 cut(s)	325, 509, 522, 640, 752, 871
Alw21I	GWGCWC	2 cut(s)	327, 511
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	2 cut(s)	537, 912
AoxI	GGCC	5 cut(s)	40, 177, 383, 554, 846
ApoI	RAATTY	4 cut(s)	89, 147, 248, 396
AspS9I	GGNCC	2 cut(s)	764, 846
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	2 cut(s)	34, 179
AvaII	GGWCC	1 cut(s)	764
BalI	TGGCCA	1 cut(s)	385
BanII	GRGCYC	2 cut(s)	327, 511
BarI	GAAGNNNNNNTAC	2 cut(s)	401, 433
BauI	CACGAG	1 cut(s)	17
BbsI	GAAGAC	2 cut(s)	12, 477
Bbv12I	GWGCWC	2 cut(s)	327, 511
BccI	CCATC	4 cut(s)	218, 335, 565, 908
BceAI	ACGGC	1 cut(s)	908
BciT130I	CCWGG	3 cut(s)	298, 587, 659
BciVI	GTATCC	1 cut(s)	264
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	516
BfuI	GTATCC	1 cut(s)	264
Bme1390I	CCNGG	4 cut(s)	263, 298, 587, 659
Bme18I	GGWCC	1 cut(s)	764
BmgT120I	GGNCC	2 cut(s)	764, 846
BmrFI	CCNGG	4 cut(s)	263, 298, 587, 659
BmsI	GCATC	3 cut(s)	298, 559, 688
BpiI	GAAGAC	2 cut(s)	12, 477
BpuMI	CCSGG	1 cut(s)	263
BsaAI	YACGTR	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	380, 459
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 761
Bse1I	ACTGG	1 cut(s)	779
BseBI	CCWGG	3 cut(s)	298, 587, 659
BseDI	CCNNGG	2 cut(s)	380, 459
BseGI	GGATG	2 cut(s)	574, 937
BseLI	CCNNNNNNNGG	2 cut(s)	38, 761
BseMII	CTCAG	1 cut(s)	572
BseNI	ACTGG	1 cut(s)	779
BshFI	GGCC	5 cut(s)	42, 179, 385, 556, 848
BsiHKAI	GWGCWC	2 cut(s)	327, 511
BsiSI	CCGG	1 cut(s)	263
BslFI	GGGAC	2 cut(s)	245, 704
BslI	CCNNNNNNNGG	2 cut(s)	38, 761
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	2 cut(s)	245, 704
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	5 cut(s)	42, 179, 385, 556, 848
Bsp1286I	GDGCHC	2 cut(s)	327, 511
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	3 cut(s)	373, 529, 904
Bsp19I	CCATGG	1 cut(s)	380
BspACI	CCGC	1 cut(s)	701
BspANI	GGCC	5 cut(s)	42, 179, 385, 556, 848
BspCNI	CTCAG	1 cut(s)	573
BspPI	GGATC	2 cut(s)	537, 912
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	779
BssECI	CCNNGG	2 cut(s)	380, 459
BssMI	GATC	3 cut(s)	373, 529, 904
BssNI	GRCGYC	1 cut(s)	201
BssSI	CACGAG	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	380
Bst2BI	CACGAG	1 cut(s)	17
Bst2UI	CCWGG	3 cut(s)	298, 587, 659
Bst4CI	ACNGT	1 cut(s)	497
Bst6I	CTCTTC	1 cut(s)	606
BstACI	GRCGYC	1 cut(s)	201
BstAUI	TGTACA	1 cut(s)	417
BstBAI	YACGTR	1 cut(s)	175
BstC8I	GCNNGC	4 cut(s)	55, 68, 303, 638
BstDEI	CTNAG	4 cut(s)	447, 581, 643, 783
BstDSI	CCRYGG	1 cut(s)	380
BstF5I	GGATG	2 cut(s)	574, 937
BstKTI	GATC	3 cut(s)	376, 532, 907
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	3 cut(s)	373, 529, 904
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 497, 506, 784
BstNI	CCWGG	3 cut(s)	298, 587, 659
BstSCI	CCNGG	4 cut(s)	261, 296, 585, 657
BstV2I	GAAGAC	2 cut(s)	12, 477
BsuI	GTATCC	1 cut(s)	264
BsuRI	GGCC	5 cut(s)	42, 179, 385, 556, 848
BtgI	CCRYGG	1 cut(s)	380
BtsCI	GGATG	2 cut(s)	574, 937
BtsIMutI	CAGTG	2 cut(s)	243, 502
Cac8I	GCNNGC	4 cut(s)	55, 68, 303, 638
Cfr13I	GGNCC	2 cut(s)	764, 846
CseI	GACGC	1 cut(s)	190
CsiI	ACCWGGT	1 cut(s)	657
Csp6I	GTAC	5 cut(s)	172, 319, 345, 418, 884
CviAII	CATG	6 cut(s)	63, 277, 381, 650, 731, 901
CviQI	GTAC	5 cut(s)	172, 319, 345, 418, 884
DdeI	CTNAG	4 cut(s)	447, 581, 643, 783
DpnI	GATC	3 cut(s)	375, 531, 906
DpnII	GATC	3 cut(s)	373, 529, 904
DraI	TTTAAA	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	383
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
Ecl136II	GAGCTC	2 cut(s)	325, 509
Eco130I	CCWWGG	1 cut(s)	380
Eco24I	GRGCYC	2 cut(s)	327, 511
Eco47I	GGWCC	1 cut(s)	764
Eco53kI	GAGCTC	2 cut(s)	325, 509
Eco57I	CTGAAG	1 cut(s)	699
EcoICRI	GAGCTC	2 cut(s)	325, 509
EcoO109I	RGGNCCY	1 cut(s)	764
EcoRII	CCWGG	3 cut(s)	296, 585, 657
EcoT14I	CCWWGG	1 cut(s)	380
EcoT38I	GRGCYC	2 cut(s)	327, 511
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	6 cut(s)	66, 280, 384, 653, 734, 904
FaqI	GGGAC	2 cut(s)	245, 704
FatI	CATG	6 cut(s)	62, 276, 380, 649, 730, 900
FauI	CCCGC	1 cut(s)	694
FblI	GTMKAC	1 cut(s)	75
FokI	GGATG	2 cut(s)	581, 944
FriOI	GRGCYC	2 cut(s)	327, 511
FspBI	CTAG	1 cut(s)	516
HaeIII	GGCC	5 cut(s)	42, 179, 385, 556, 848
HapII	CCGG	1 cut(s)	263
HgaI	GACGC	1 cut(s)	190
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	6 cut(s)	66, 280, 384, 653, 734, 904
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	2 cut(s)	137, 161
HpaI	GTTAAC	1 cut(s)	292
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	2 cut(s)	34, 179
Hpy166II	GTNNAC	3 cut(s)	76, 292, 418
Hpy188I	TCNGA	6 cut(s)	97, 142, 373, 534, 582, 756
Hpy188III	TCNNGA	2 cut(s)	406, 695
Hpy8I	GTNNAC	3 cut(s)	76, 292, 418
HpyAV	CCTTC	6 cut(s)	69, 187, 750, 777, 837, 935
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	3 cut(s)	311, 572, 734
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 497, 506, 784
HpyF3I	CTNAG	4 cut(s)	447, 581, 643, 783
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	6 cut(s)	66, 280, 384, 653, 734, 904
KspAI	GTTAAC	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	373, 529, 904
LmnI	GCTCC	2 cut(s)	506, 757
LweI	GCATC	3 cut(s)	298, 559, 688
MabI	ACCWGGT	1 cut(s)	657
MaeI	CTAG	1 cut(s)	516
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	892
MalI	GATC	3 cut(s)	375, 531, 906
MboI	GATC	3 cut(s)	373, 529, 904
MboII	GAAGA	7 cut(s)	17, 233, 368, 482, 593, 705, 842
MhlI	GDGCHC	2 cut(s)	327, 511
MlsI	TGGCCA	1 cut(s)	385
MluCI	AATT	6 cut(s)	89, 110, 147, 248, 396, 624
MluNI	TGGCCA	1 cut(s)	385
MnlI	CCTC	6 cut(s)	18, 53, 95, 454, 820, 922
Mox20I	TGGCCA	1 cut(s)	385
MscI	TGGCCA	1 cut(s)	385
MseI	TTAA	3 cut(s)	108, 291, 837
MslI	CAYNNNNRTG	1 cut(s)	899
Msp20I	TGGCCA	1 cut(s)	385
MspA1I	CMGCKG	1 cut(s)	871
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	4 cut(s)	263, 298, 587, 659
Mva1269I	GAATGC	1 cut(s)	286
MvaI	CCWGG	3 cut(s)	298, 587, 659
MwoI	GCNNNNNNNGC	4 cut(s)	63, 497, 506, 784
NciI	CCSGG	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	380
NdeII	GATC	3 cut(s)	373, 529, 904
NlaIII	CATG	6 cut(s)	66, 280, 384, 653, 734, 904
NmeAIII	GCCGAG	1 cut(s)	484
NmuCI	GTSAC	1 cut(s)	892
PctI	GAATGC	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	137, 161
PfoI	TCCNGGA	1 cut(s)	261
Ppu21I	YACGTR	1 cut(s)	175
PpuMI	RGGWCCY	1 cut(s)	764
Psp124BI	GAGCTC	2 cut(s)	327, 511
Psp5II	RGGWCCY	1 cut(s)	764
Psp6I	CCWGG	3 cut(s)	296, 585, 657
PspGI	CCWGG	3 cut(s)	296, 585, 657
PspPI	GGNCC	2 cut(s)	764, 846
PspPPI	RGGWCCY	1 cut(s)	764
PsrI	GAACNNNNNNTAC	4 cut(s)	328, 352, 360, 384
PvuII	CAGCTG	1 cut(s)	871
RsaI	GTAC	5 cut(s)	173, 320, 346, 419, 885
RsaNI	GTAC	5 cut(s)	172, 319, 345, 418, 884
RseI	CAYNNNNRTG	1 cut(s)	899
SacI	GAGCTC	2 cut(s)	327, 511
SaqAI	TTAA	3 cut(s)	108, 291, 837
Sau3AI	GATC	3 cut(s)	373, 529, 904
Sau96I	GGNCC	2 cut(s)	764, 846
ScrFI	CCNGG	4 cut(s)	263, 298, 587, 659
SduI	GDGCHC	2 cut(s)	327, 511
SexAI	ACCWGGT	1 cut(s)	657
SfaNI	GCATC	3 cut(s)	298, 559, 688
SinI	GGWCC	1 cut(s)	764
SmiMI	CAYNNNNRTG	1 cut(s)	899
Sse9I	AATT	6 cut(s)	89, 110, 147, 248, 396, 624
SsiI	CCGC	1 cut(s)	701
SspMI	CTAG	1 cut(s)	516
SstI	GAGCTC	2 cut(s)	327, 511
StyD4I	CCNGG	4 cut(s)	261, 296, 585, 657
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	497
TaiI	ACGT	1 cut(s)	177
TasI	AATT	6 cut(s)	89, 110, 147, 248, 396, 624
TatI	WGTACW	2 cut(s)	417, 883
TfiI	GAWTC	2 cut(s)	137, 161
Tru1I	TTAA	3 cut(s)	108, 291, 837
Tru9I	TTAA	3 cut(s)	108, 291, 837
TscAI	CASTG	2 cut(s)	250, 502
TseFI	GTSAC	1 cut(s)	892
Tsp45I	GTSAC	1 cut(s)	892
TspDTI	ATGAA	6 cut(s)	51, 242, 293, 699, 732, 954
TspGWI	ACGGA	2 cut(s)	141, 620
TspRI	CASTG	2 cut(s)	250, 502
VpaK11BI	GGWCC	1 cut(s)	764
XapI	RAATTY	4 cut(s)	89, 147, 248, 396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	75
XspI	CTAG	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.