Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003603

Physical Location & Seq

Genomic Coordinates Reverse (-)

14094889 .. 14098228

Gene Structure 3340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG093800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGAAGACTATACTCTCGTGGTGAGGAAGCCCTGCTTTGGCCTCCCTACTGCTTGCCCTTCATGCTTGCCCCTCTACTTCTACCTCAAATTCGCTAACCTCCCGTTTCAATTGGACTATAATCTCACCTACCCTGATTCTGATAAAATTCCGTATGTTGAATCTGGTGAGTACGTGGCCTATAATAATGAGAAGGGTGGCGTGATTGAGAGACTGAAAGAAGATGGCATTGTTGATTTGGACACTGAATTTCAGTCAGTCCCGGAATGGATATCTATGAAGGCCATGGTTAGCTCCTGGCTTGCTGATGCAATCAAGTATGAGCTCTGGGTGGGAACTGATGGTACTTCTGCCCAAACTATATATTGTTCTGATCTTCCGTGGCCAATAGGAAAAGTTTTGTTCTTGAAGCAAGTGTACAATGTCAAGCGGCAACTTGGGATTACTAAGGACAATGCTGAAGAAATAGAAGAACAGATATACAAGAGAGCCAGCATTGCGTTTGGAGCTCTGTCTAGTAGATTGGGGGATCAAATGTTTTTATATGAAAACAGGCCGTCAAGTTTGGATGCTGTCTTTTTGAGCCAGGCACTTATCACTCTTCAAGCATTACCAGAAACATCAATTCTCCGGAGCAAGCTCTTAGAACATGAGAACCTCGTTGGGTATGCCAGTAGGGTTAATATGGAGTTTGTTGATGCGAGTACTTCATCTTCAGTCCCAAACTCCCATGCAAATCCTTCATCATCAGCTCCGAGAAGAGGTCCTTCAAACTGGCGTTCTAAGCCCAAGACCAAACCCAAAAGGGAAAAAACAAAGGAGGAGAAAGATTTTAAGAGAAGGGCCAAATATTTTTTGGTAGCACAGCTGGTTTCGGTTGTACTTTTTGTCACTCTCATGGGTCAAGTTGATGGGGTTGAGGTTGAGATTGATGATGATGATGAAGGCTTTGATTACAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009536 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_6 GST_N_4

Protein Analysis

321

Amino Acids

36.34

Weight (kDa)

4.99

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_4	PF17172	20 - 113	2.2e-19	Glutathione S-transferase N-terminal domain
GST_C_6	PF17171	166 - 227	4.7e-13	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19080 AT2G19080
fragaria_vesca	FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590
malus_domestica	MD13G1245600.v1.1
prunus_persica	Prupe.1G079200_v2.0.a1
pyrus_communis	pycom13g21680 pycom16g21400
rosa_chinensis	RchiOBHm_Chr4g0400191 RchiOBHm_Chr7g0191431 RchiOBHm_Chr7g0191541
rosa_laevigata	RLG00000004440 RLG00000009205
rosa_multiflora	Rmu_co8142490.1_g000001 Rmu_sc0000037.1_g000022 Rmu_sc0002661.1_g000008 Rmu_sc0003634.1_g000010 Rmu_sc0010599.1_g000007
rosa_roxburghii	Rroxscaffold_5G00345140
rosa_rugosa	Rorug04G0023500 Rorug04G0023600 Rorug04G0023700
rosa_samantha	Rh4AG098800 Rh4BG097100 Rh4CG108300 Rh4DG093800 Rh7AG119100 Rh7CG124100 Rh7DG122200
rosa_wichuraiana	Rw4G008210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	630
AciI	CCGC	1 cut(s)	430
AclWI	GGATC	1 cut(s)	537
AcoI	YGGCCR	1 cut(s)	383
AcsI	RAATTY	3 cut(s)	89, 147, 248
AcuI	CTGAAG	2 cut(s)	480, 699
AfaI	GTAC	5 cut(s)	173, 346, 419, 706, 882
AfiI	CCNNNNNNNGG	2 cut(s)	38, 761
AgsI	TTSAA	5 cut(s)	110, 161, 409, 605, 771
AjnI	CCWGG	2 cut(s)	296, 585
AluBI	AGCT	6 cut(s)	294, 325, 509, 640, 752, 868
AluI	AGCT	6 cut(s)	294, 325, 509, 640, 752, 868
Alw21I	GWGCWC	2 cut(s)	327, 511
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	537
Aor13HI	TCCGGA	1 cut(s)	630
AoxI	GGCC	6 cut(s)	40, 177, 282, 383, 554, 843
ApoI	RAATTY	3 cut(s)	89, 147, 248
AspS9I	GGNCC	2 cut(s)	764, 843
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	3 cut(s)	34, 118, 179
AvaII	GGWCC	1 cut(s)	764
BalI	TGGCCA	1 cut(s)	385
BanII	GRGCYC	2 cut(s)	327, 511
BarI	GAAGNNNNNNTAC	4 cut(s)	401, 433, 697, 729
BauI	CACGAG	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	2 cut(s)	327, 511
BccI	CCATC	3 cut(s)	218, 335, 905
BceAI	ACGGC	1 cut(s)	541
BciT130I	CCWGG	2 cut(s)	298, 587
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	516
BisI	GCNGC	1 cut(s)	431
BlsI	GCNGC	1 cut(s)	432
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	3 cut(s)	263, 298, 587
Bme18I	GGWCC	1 cut(s)	764
BmgT120I	GGNCC	2 cut(s)	764, 843
BmrFI	CCNGG	3 cut(s)	263, 298, 587
BmsI	GCATC	3 cut(s)	298, 559, 688
BpiI	GAAGAC	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	263
BsaAI	YACGTR	1 cut(s)	175
BsaJI	CCNNGG	2 cut(s)	285, 380
BsaWI	WCCGGW	1 cut(s)	630
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 761
Bse1I	ACTGG	2 cut(s)	672, 779
Bse3DI	GCAATG	1 cut(s)	495
BseAI	TCCGGA	1 cut(s)	630
BseBI	CCWGG	2 cut(s)	298, 587
BseDI	CCNNGG	2 cut(s)	285, 380
BseGI	GGATG	1 cut(s)	574
BseLI	CCNNNNNNNGG	2 cut(s)	38, 761
BseMI	GCAATG	1 cut(s)	495
BseNI	ACTGG	2 cut(s)	672, 779
BseRI	GAGGAG	1 cut(s)	836
BshFI	GGCC	6 cut(s)	42, 179, 284, 385, 556, 845
BsiHKAI	GWGCWC	2 cut(s)	327, 511
BsiSI	CCGG	2 cut(s)	263, 631
BslFI	GGGAC	2 cut(s)	245, 704
BslI	CCNNNNNNNGG	2 cut(s)	38, 761
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	2 cut(s)	245, 704
BsnI	GGCC	6 cut(s)	42, 179, 284, 385, 556, 845
Bsp1286I	GDGCHC	2 cut(s)	327, 511
Bsp13I	TCCGGA	1 cut(s)	630
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	2 cut(s)	373, 529
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	1 cut(s)	430
BspANI	GGCC	6 cut(s)	42, 179, 284, 385, 556, 845
BspEI	TCCGGA	1 cut(s)	630
BspPI	GGATC	1 cut(s)	537
BsrDI	GCAATG	1 cut(s)	495
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	2 cut(s)	672, 779
BssECI	CCNNGG	2 cut(s)	285, 380
BssMI	GATC	2 cut(s)	373, 529
BssSI	CACGAG	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	17
Bst2UI	CCWGG	2 cut(s)	298, 587
Bst6I	CTCTTC	2 cut(s)	606, 754
BstAUI	TGTACA	1 cut(s)	417
BstBAI	YACGTR	1 cut(s)	175
BstC8I	GCNNGC	5 cut(s)	55, 68, 303, 493, 638
BstDEI	CTNAG	3 cut(s)	447, 643, 783
BstDSI	CCRYGG	2 cut(s)	285, 380
BstF5I	GGATG	1 cut(s)	574
BstKTI	GATC	2 cut(s)	376, 532
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	2 cut(s)	373, 529
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 497, 506, 784
BstNI	CCWGG	2 cut(s)	298, 587
BstSCI	CCNGG	3 cut(s)	261, 296, 585
BstV2I	GAAGAC	1 cut(s)	12
BsuRI	GGCC	6 cut(s)	42, 179, 284, 385, 556, 845
BtgI	CCRYGG	2 cut(s)	285, 380
BtsCI	GGATG	1 cut(s)	574
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	5 cut(s)	55, 68, 303, 493, 638
Cfr13I	GGNCC	2 cut(s)	764, 843
Csp6I	GTAC	5 cut(s)	172, 345, 418, 705, 881
CviAII	CATG	5 cut(s)	63, 286, 650, 731, 898
CviQI	GTAC	5 cut(s)	172, 345, 418, 705, 881
DdeI	CTNAG	3 cut(s)	447, 643, 783
DpnI	GATC	2 cut(s)	375, 531
DpnII	GATC	2 cut(s)	373, 529
EaeI	YGGCCR	1 cut(s)	383
Eam1104I	CTCTTC	2 cut(s)	606, 754
EarI	CTCTTC	2 cut(s)	606, 754
Ecl136II	GAGCTC	2 cut(s)	325, 509
Eco130I	CCWWGG	1 cut(s)	285
Eco24I	GRGCYC	2 cut(s)	327, 511
Eco32I	GATATC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	764
Eco53kI	GAGCTC	2 cut(s)	325, 509
Eco57I	CTGAAG	2 cut(s)	480, 699
EcoICRI	GAGCTC	2 cut(s)	325, 509
EcoO109I	RGGNCCY	1 cut(s)	764
EcoRII	CCWGG	2 cut(s)	296, 585
EcoRV	GATATC	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	285
EcoT38I	GRGCYC	2 cut(s)	327, 511
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	5 cut(s)	66, 289, 653, 734, 901
FalI	AAGNNNNNCTT	4 cut(s)	20, 52, 751, 783
FaqI	GGGAC	2 cut(s)	245, 704
FatI	CATG	5 cut(s)	62, 285, 649, 730, 897
Fnu4HI	GCNGC	1 cut(s)	431
FokI	GGATG	1 cut(s)	581
FriOI	GRGCYC	2 cut(s)	327, 511
Fsp4HI	GCNGC	1 cut(s)	431
FspBI	CTAG	1 cut(s)	516
GluI	GCNGC	1 cut(s)	431
HaeIII	GGCC	6 cut(s)	42, 179, 284, 385, 556, 845
HapII	CCGG	2 cut(s)	263, 631
Hin1II	CATG	5 cut(s)	66, 289, 653, 734, 901
HinfI	GANTC	2 cut(s)	137, 161
HpaII	CCGG	2 cut(s)	263, 631
HphI	GGTGA	3 cut(s)	34, 118, 179
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	3 cut(s)	142, 373, 756
Hpy188III	TCNNGA	2 cut(s)	406, 631
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	7 cut(s)	69, 187, 274, 750, 777, 834, 938
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	2 cut(s)	311, 734
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 497, 506, 784
HpyF3I	CTNAG	3 cut(s)	447, 643, 783
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	5 cut(s)	66, 289, 653, 734, 901
Kpn2I	TCCGGA	1 cut(s)	630
Kzo9I	GATC	2 cut(s)	373, 529
LmnI	GCTCC	4 cut(s)	299, 506, 633, 757
LweI	GCATC	3 cut(s)	298, 559, 688
MaeI	CTAG	1 cut(s)	516
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	889
MalI	GATC	2 cut(s)	375, 531
MboI	GATC	2 cut(s)	373, 529
MboII	GAAGA	8 cut(s)	17, 233, 368, 473, 482, 593, 705, 771
MfeI	CAATTG	1 cut(s)	110
MhlI	GDGCHC	2 cut(s)	327, 511
MlsI	TGGCCA	1 cut(s)	385
MluCI	AATT	5 cut(s)	89, 110, 147, 248, 624
MluNI	TGGCCA	1 cut(s)	385
MnlI	CCTC	9 cut(s)	18, 53, 83, 95, 110, 668, 755, 814, 913
Mox20I	TGGCCA	1 cut(s)	385
MroI	TCCGGA	1 cut(s)	630
MscI	TGGCCA	1 cut(s)	385
MseI	TTAA	2 cut(s)	681, 834
MslI	CAYNNNNRTG	1 cut(s)	896
Msp20I	TGGCCA	1 cut(s)	385
MspA1I	CMGCKG	1 cut(s)	868
MspI	CCGG	2 cut(s)	263, 631
MspR9I	CCNGG	3 cut(s)	263, 298, 587
MunI	CAATTG	1 cut(s)	110
MvaI	CCWGG	2 cut(s)	298, 587
MwoI	GCNNNNNNNGC	4 cut(s)	63, 497, 506, 784
NciI	CCSGG	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	285
NdeII	GATC	2 cut(s)	373, 529
NlaIII	CATG	5 cut(s)	66, 289, 653, 734, 901
NmuCI	GTSAC	1 cut(s)	889
PfeI	GAWTC	2 cut(s)	137, 161
PfoI	TCCNGGA	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	432
Ppu21I	YACGTR	1 cut(s)	175
PpuMI	RGGWCCY	1 cut(s)	764
Psp124BI	GAGCTC	2 cut(s)	327, 511
Psp5II	RGGWCCY	1 cut(s)	764
Psp6I	CCWGG	2 cut(s)	296, 585
PspGI	CCWGG	2 cut(s)	296, 585
PspPI	GGNCC	2 cut(s)	764, 843
PspPPI	RGGWCCY	1 cut(s)	764
PsrI	GAACNNNNNNTAC	2 cut(s)	328, 360
PvuII	CAGCTG	1 cut(s)	868
RsaI	GTAC	5 cut(s)	173, 346, 419, 706, 882
RsaNI	GTAC	5 cut(s)	172, 345, 418, 705, 881
RseI	CAYNNNNRTG	1 cut(s)	896
SacI	GAGCTC	2 cut(s)	327, 511
SaqAI	TTAA	2 cut(s)	681, 834
SatI	GCNGC	1 cut(s)	431
Sau3AI	GATC	2 cut(s)	373, 529
Sau96I	GGNCC	2 cut(s)	764, 843
ScaI	AGTACT	1 cut(s)	706
ScrFI	CCNGG	3 cut(s)	263, 298, 587
SduI	GDGCHC	2 cut(s)	327, 511
SfaNI	GCATC	3 cut(s)	298, 559, 688
SinI	GGWCC	1 cut(s)	764
SmiMI	CAYNNNNRTG	1 cut(s)	896
Sse9I	AATT	5 cut(s)	89, 110, 147, 248, 624
SsiI	CCGC	1 cut(s)	430
SspI	AATATT	1 cut(s)	851
SspMI	CTAG	1 cut(s)	516
SstI	GAGCTC	2 cut(s)	327, 511
StyD4I	CCNGG	3 cut(s)	261, 296, 585
StyI	CCWWGG	1 cut(s)	285
TaiI	ACGT	1 cut(s)	177
TasI	AATT	5 cut(s)	89, 110, 147, 248, 624
TatI	WGTACW	3 cut(s)	417, 704, 880
TauI	GCSGC	1 cut(s)	433
TfiI	GAWTC	2 cut(s)	137, 161
Tru1I	TTAA	2 cut(s)	681, 834
Tru9I	TTAA	2 cut(s)	681, 834
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	889
Tsp45I	GTSAC	1 cut(s)	889
TspDTI	ATGAA	6 cut(s)	51, 293, 561, 699, 732, 957
TspGWI	ACGGA	2 cut(s)	141, 369
TspRI	CASTG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	764
XapI	RAATTY	3 cut(s)	89, 147, 248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	853
XspI	CTAG	1 cut(s)	516
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.