Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003603

Physical Location & Seq

Genomic Coordinates Forward (+)

3358601 .. 3359170

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0023600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCGCAGATTAGGGCTATGGCTGCTCGTAACCCCTCTGACTCTGCAAGGGTCACACTGGGAGCGGTGGGGGCGGCGGCTCTGCAGGATACTCACTGGTATATGGTTGGGCGCCTACTCGGGAATAAGACTCTATTCCCTGGTTTCAAAGGGACTATACCCTCAATTTGGCGTTTTGATCACGAAGCGGATCACAATAAGGCTCTGCATGGCGGGCCGTGGTTTTACAGGAATACGATGTTGTTGCTTGGAGACTATGATGGGATTGGTTCGGTGGAAACAGTCCCGCTGTGGAAGTTGGAGACTTGGGTGGTGGTGAAAGGACTATCGATAGCCCTTCGTAACAAAGCAACCCTAACTCTGATAGGGTATGCGATTGGCCAGATAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009536 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_6 GST_N_4

Protein Analysis

130

Amino Acids

14.28

Weight (kDa)

9.63

Isoelectric Point (pI)

31.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19080 AT2G19080
fragaria_vesca	FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590
malus_domestica	MD13G1245600.v1.1
prunus_persica	Prupe.1G079200_v2.0.a1
pyrus_communis	pycom13g21680 pycom16g21400
rosa_chinensis	RchiOBHm_Chr4g0400191 RchiOBHm_Chr7g0191431 RchiOBHm_Chr7g0191541
rosa_laevigata	RLG00000004440 RLG00000009205
rosa_multiflora	Rmu_co8142490.1_g000001 Rmu_sc0000037.1_g000022 Rmu_sc0002661.1_g000008 Rmu_sc0003634.1_g000010 Rmu_sc0010599.1_g000007
rosa_roxburghii	Rroxscaffold_5G00345140
rosa_rugosa	Rorug04G0023500 Rorug04G0023600 Rorug04G0023700
rosa_samantha	Rh4AG098800 Rh4BG097100 Rh4CG108300 Rh4DG093800 Rh7AG119100 Rh7CG124100 Rh7DG122200
rosa_wichuraiana	Rw4G008210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	111
AccBSI	CCGCTC	1 cut(s)	65
AciI	CCGC	6 cut(s)	65, 74, 77, 188, 213, 287
AclWI	GGATC	1 cut(s)	198
AcoI	YGGCCR	1 cut(s)	379
AcyI	GRCGYC	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	139
Alw26I	GTCTC	2 cut(s)	246, 296
AlwI	GGATC	1 cut(s)	198
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	2 cut(s)	215, 379
ApeKI	GCWGC	1 cut(s)	23
AspLEI	GCGC	2 cut(s)	7, 114
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	328
AvaI	CYCGRG	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	1 cut(s)	254
BceAI	ACGGC	1 cut(s)	202
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BciT130I	CCWGG	1 cut(s)	141
BciVI	GTATCC	1 cut(s)	82
BclI	TGATCA	1 cut(s)	178
BcoDI	GTCTC	2 cut(s)	246, 296
BfmI	CTRYAG	1 cut(s)	83
BfoI	RGCGCY	1 cut(s)	115
BfuI	GTATCC	1 cut(s)	82
BisI	GCNGC	3 cut(s)	24, 75, 78
BlsI	GCNGC	3 cut(s)	25, 76, 79
Bme1390I	CCNGG	1 cut(s)	141
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	1 cut(s)	141
BmrI	ACTGGG	1 cut(s)	68
BmuI	ACTGGG	1 cut(s)	68
Bsa29I	ATCGAT	1 cut(s)	329
BsaHI	GRCGYC	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	139, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
Bse1I	ACTGG	2 cut(s)	63, 101
BseBI	CCWGG	1 cut(s)	141
BseCI	ATCGAT	1 cut(s)	329
BseDI	CCNNGG	2 cut(s)	139, 218
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseNI	ACTGG	2 cut(s)	63, 101
BseXI	GCAGC	1 cut(s)	10
BshFI	GGCC	2 cut(s)	217, 381
BshNI	GGYRCC	1 cut(s)	111
BshVI	ATCGAT	1 cut(s)	329
BsiHKCI	CYCGRG	1 cut(s)	119
BslFI	GGGAC	2 cut(s)	166, 269
BslI	CCNNNNNNNGG	1 cut(s)	168
BsmAI	GTCTC	2 cut(s)	246, 296
BsmFI	GGGAC	2 cut(s)	166, 269
BsnI	GGCC	2 cut(s)	217, 381
BsoBI	CYCGRG	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	178, 190
BspACI	CCGC	6 cut(s)	65, 74, 77, 188, 213, 287
BspANI	GGCC	2 cut(s)	217, 381
BspDI	ATCGAT	1 cut(s)	329
BspLI	GGNNCC	1 cut(s)	113
BspMAI	CTGCAG	1 cut(s)	87
BspPI	GGATC	1 cut(s)	198
BspT107I	GGYRCC	1 cut(s)	111
BsrBI	CCGCTC	1 cut(s)	65
BsrI	ACTGG	2 cut(s)	63, 101
BssECI	CCNNGG	2 cut(s)	139, 218
BssMI	GATC	2 cut(s)	178, 190
BssNI	GRCGYC	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	283
BstACI	GRCGYC	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	215
BstDSI	CCRYGG	1 cut(s)	218
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	2 cut(s)	7, 114
BstKTI	GATC	2 cut(s)	181, 193
BstMAI	GTCTC	2 cut(s)	246, 296
BstMBI	GATC	2 cut(s)	178, 190
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 71, 214
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	10
Bsu15I	ATCGAT	1 cut(s)	329
BsuI	GTATCC	1 cut(s)	82
BsuRI	GGCC	2 cut(s)	217, 381
BsuTUI	ATCGAT	1 cut(s)	329
BtgI	CCRYGG	1 cut(s)	218
BtsIMutI	CAGTG	2 cut(s)	56, 94
Cac8I	GCNNGC	1 cut(s)	215
CfoI	GCGC	2 cut(s)	7, 114
Cfr13I	GGNCC	1 cut(s)	215
ClaI	ATCGAT	1 cut(s)	329
CviAII	CATG	2 cut(s)	209, 390
CviJI	RGCY	7 cut(s)	17, 23, 80, 203, 217, 335, 381
CviKI_1	RGCY	7 cut(s)	17, 23, 80, 203, 217, 335, 381
DinI	GGCGCC	1 cut(s)	113
DpnI	GATC	2 cut(s)	180, 192
DpnII	GATC	2 cut(s)	178, 190
EaeI	YGGCCR	1 cut(s)	379
Eco88I	CYCGRG	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	139
EgeI	GGCGCC	1 cut(s)	113
EheI	GGCGCC	1 cut(s)	113
FaeI	CATG	2 cut(s)	212, 393
FaiI	YATR	8 cut(s)	20, 102, 104, 158, 210, 258, 372, 391
FaqI	GGGAC	2 cut(s)	166, 269
FatI	CATG	2 cut(s)	208, 389
FauI	CCCGC	2 cut(s)	206, 294
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	3 cut(s)	24, 75, 78
Fsp4HI	GCNGC	3 cut(s)	24, 75, 78
GlaI	GCGC	2 cut(s)	6, 113
GluI	GCNGC	3 cut(s)	24, 75, 78
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	217, 381
HhaI	GCGC	2 cut(s)	7, 114
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	212, 393
Hin6I	GCGC	2 cut(s)	5, 112
HinP1I	GCGC	2 cut(s)	5, 112
HinfI	GANTC	2 cut(s)	41, 130
HphI	GGTGA	1 cut(s)	328
Hpy188I	TCNGA	2 cut(s)	40, 363
Hpy188III	TCNNGA	2 cut(s)	121, 182
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4V	TGCA	3 cut(s)	47, 85, 208
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 71, 214
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	2 cut(s)	212, 393
HspAI	GCGC	2 cut(s)	5, 112
KasI	GGCGCC	1 cut(s)	111
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	178, 190
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	6 cut(s)	44, 71, 82, 126, 153, 214
Lsp1109I	GCAGC	1 cut(s)	10
MaeIII	GTNAC	3 cut(s)	29, 52, 341
MalI	GATC	2 cut(s)	180, 192
MbiI	CCGCTC	1 cut(s)	65
MboI	GATC	2 cut(s)	178, 190
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	1 cut(s)	165
MluNI	TGGCCA	1 cut(s)	381
Mly113I	GGCGCC	1 cut(s)	112
MlyI	GAGTC	2 cut(s)	35, 124
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	2 cut(s)	46, 172
Mox20I	TGGCCA	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	381
Msp20I	TGGCCA	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	289
MspR9I	CCNGG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	3 cut(s)	23, 71, 214
NarI	GGCGCC	1 cut(s)	112
NdeII	GATC	2 cut(s)	178, 190
NlaIII	CATG	2 cut(s)	212, 393
NlaIV	GGNNCC	1 cut(s)	113
NmuCI	GTSAC	1 cut(s)	52
PkrI	GCNGC	3 cut(s)	25, 76, 79
PleI	GAGTC	2 cut(s)	35, 124
PluTI	GGCGCC	1 cut(s)	115
PpsI	GAGTC	2 cut(s)	35, 124
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	113
PspPI	GGNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	87
SatI	GCNGC	3 cut(s)	24, 75, 78
Sau3AI	GATC	2 cut(s)	178, 190
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	2 cut(s)	35, 124
ScrFI	CCNGG	1 cut(s)	141
SfcI	CTRYAG	1 cut(s)	83
SfoI	GGCGCC	1 cut(s)	113
Sse9I	AATT	1 cut(s)	165
SsiI	CCGC	6 cut(s)	65, 74, 77, 188, 213, 287
SspDI	GGCGCC	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	283
TaqI	TCGA	1 cut(s)	329
TasI	AATT	1 cut(s)	165
TauI	GCSGC	2 cut(s)	77, 80
TscAI	CASTG	2 cut(s)	63, 101
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	52
TspRI	CASTG	2 cut(s)	63, 101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.