Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003603

Physical Location & Seq

Genomic Coordinates Reverse (-)

17730140 .. 17734315

Gene Structure 4176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37224

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTTCATTGTGATCGACCCGGATCCGCCCAACCTCAGACTGGGTGACCCCCAAGCCAATTTCCAAAACCCTCAAGAAACCTTTCCTCCACGTCTCTCTCTCTCTCTCACACACCTTCTGCAACATCCACTTCGCTTCTGGGTTCTCAAAGTCAAAACCCTAATCTGTTTCTACATGGAAGACTATACTCTCGTGGTGAGGAAGCCCTGCTTTGGCCTCCCTACTGCTTGCCCTTCATGCTTGCCCCTCTACTTCTACCTCAAATTCGCTAACCTCCCCTTTCAATTGGACTATAATCTCACCTACCCTGATTCTGATAAAATTCCGTATGTTGAATCTGGTGAGTACGTGGCCTATAATAATGAGAAGGGTGGCGTGATTGAGAGACTGAAAGAAGATGGCATTGTTGATCTGGACACTGAATTCCAATCAGTCCCGGAATGGATATCTATGAAGGCCATGGTTAGCTCCTGGCTTGCTGATGCAATCAAGTATGAGCTCTGGGTGGGAACTGATGGTACTTCTGCTCAAACTATATATTGTTCTGACCTTCCATGGCCAATAGGAAAAATTTTGTTCTTGAAGCAACTGTACAATGTCAAGCAGCAACTTGGGATTACTAAGGACAATGCTGAAGAAATAGAAGAACAGATATACAAGAGAGCCAGCATTGCGTTTGGAGCTCTGTCTAGTAGATTGGGGGATCAAATGTTTTTATATGAAAACAGGCCGTCAAGTTTGGATGCTGTCTTTTTGAGCCAGGCACTTATCACTCTTCAAGCGTTACCAGAAACATCAATTCTCCGGAGCAAGCTCTTAGAACATGAGAACCTCGTTGGGTATGCCAGTAGGGTTAATATGGAGTTTGTTGATGCGAGTACTTCATCTTCAGTCCCAAACTCCCATGCAAATCCTTCATCATCAGCTCCGAGAAGAGGTCCTTCAAACTGGCGTTCTAAGCCCAAGACCAAACCCAAAAGGGAAAAAACAAAGGAGGAGAAAGATTTTAAGAGAAGGGCCAAATATTTTTTGATAGCACAGCTGGTTTCGGTTGTACTTTTTGTCACTCTCATGGGTCAAGTTGATGGGGTTGAGGTTGAGCTTGATGATGATGATGAAGGCTTTGATTACAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009536 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_6 GST_N_4

Protein Analysis

379

Amino Acids

43.16

Weight (kDa)

5.14

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_4	PF17172	78 - 171	3e-19	Glutathione S-transferase N-terminal domain
GST_C_6	PF17171	224 - 285	6.1e-13	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19080 AT2G19080
fragaria_vesca	FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590
malus_domestica	MD13G1245600.v1.1
prunus_persica	Prupe.1G079200_v2.0.a1
pyrus_communis	pycom13g21680 pycom16g21400
rosa_chinensis	RchiOBHm_Chr4g0400191 RchiOBHm_Chr7g0191431 RchiOBHm_Chr7g0191541
rosa_laevigata	RLG00000004440 RLG00000009205
rosa_multiflora	Rmu_co8142490.1_g000001 Rmu_sc0000037.1_g000022 Rmu_sc0002661.1_g000008 Rmu_sc0003634.1_g000010 Rmu_sc0010599.1_g000007
rosa_roxburghii	Rroxscaffold_5G00345140
rosa_rugosa	Rorug04G0023500 Rorug04G0023600 Rorug04G0023700
rosa_samantha	Rh4AG098800 Rh4BG097100 Rh4CG108300 Rh4DG093800 Rh7AG119100 Rh7CG124100 Rh7DG122200
rosa_wichuraiana	Rw4G008210

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	804
AciI	CCGC	1 cut(s)	26
AclWI	GGATC	3 cut(s)	17, 30, 711
AcoI	YGGCCR	1 cut(s)	557
AcsI	RAATTY	4 cut(s)	263, 321, 422, 570
AcuI	CTGAAG	2 cut(s)	654, 873
AfaI	GTAC	5 cut(s)	347, 520, 593, 880, 1056
AfiI	CCNNNNNNNGG	3 cut(s)	40, 212, 935
AgsI	TTSAA	5 cut(s)	284, 335, 583, 779, 945
AjiI	CACGTC	1 cut(s)	92
AjnI	CCWGG	2 cut(s)	470, 759
AluBI	AGCT	7 cut(s)	468, 499, 683, 814, 926, 1042, 1102
AluI	AGCT	7 cut(s)	468, 499, 683, 814, 926, 1042, 1102
Alw21I	GWGCWC	2 cut(s)	501, 685
Alw26I	GTCTC	2 cut(s)	98, 379
AlwI	GGATC	3 cut(s)	17, 30, 711
Aor13HI	TCCGGA	1 cut(s)	804
AoxI	GGCC	6 cut(s)	214, 351, 456, 557, 728, 1017
ApeKI	GCWGC	1 cut(s)	604
ApoI	RAATTY	4 cut(s)	263, 321, 422, 570
Asp700I	GAANNNNTTC	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	938, 1017
AsuC2I	CCSGG	2 cut(s)	20, 437
AsuHPI	GGTGA	4 cut(s)	56, 208, 292, 353
AvaII	GGWCC	1 cut(s)	938
BalI	TGGCCA	1 cut(s)	559
BamHI	GGATCC	1 cut(s)	22
BanII	GRGCYC	2 cut(s)	501, 685
BarI	GAAGNNNNNNTAC	4 cut(s)	575, 607, 871, 903
BauI	CACGAG	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	2 cut(s)	501, 685
BbvI	GCAGC	1 cut(s)	616
BccI	CCATC	3 cut(s)	392, 509, 1079
BceAI	ACGGC	1 cut(s)	715
BciT130I	CCWGG	2 cut(s)	472, 761
BcnI	CCSGG	2 cut(s)	20, 437
BcoDI	GTCTC	2 cut(s)	98, 379
BfaI	CTAG	1 cut(s)	690
BisI	GCNGC	1 cut(s)	605
BlsI	GCNGC	1 cut(s)	606
BmcAI	AGTACT	1 cut(s)	880
Bme1390I	CCNGG	4 cut(s)	20, 437, 472, 761
Bme18I	GGWCC	1 cut(s)	938
BmgBI	CACGTC	1 cut(s)	92
BmgT120I	GGNCC	2 cut(s)	938, 1017
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	4 cut(s)	20, 437, 472, 761
BmrI	ACTGGG	1 cut(s)	50
BmsI	GCATC	3 cut(s)	472, 733, 862
BmuI	ACTGGG	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	57
BpuMI	CCSGG	2 cut(s)	20, 437
BsaAI	YACGTR	1 cut(s)	349
BsaJI	CCNNGG	2 cut(s)	459, 554
BsaWI	WCCGGW	1 cut(s)	804
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 212, 935
Bse1I	ACTGG	3 cut(s)	45, 846, 953
Bse3DI	GCAATG	1 cut(s)	669
BseAI	TCCGGA	1 cut(s)	804
BseBI	CCWGG	2 cut(s)	472, 761
BseDI	CCNNGG	2 cut(s)	459, 554
BseGI	GGATG	2 cut(s)	124, 748
BseLI	CCNNNNNNNGG	3 cut(s)	40, 212, 935
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	1 cut(s)	49
BseNI	ACTGG	3 cut(s)	45, 846, 953
BseRI	GAGGAG	1 cut(s)	1010
BseXI	GCAGC	1 cut(s)	616
BshFI	GGCC	6 cut(s)	216, 353, 458, 559, 730, 1019
BsiHKAI	GWGCWC	2 cut(s)	501, 685
BsiSI	CCGG	3 cut(s)	20, 437, 805
BslFI	GGGAC	2 cut(s)	419, 878
BslI	CCNNNNNNNGG	3 cut(s)	40, 212, 935
BsmAI	GTCTC	2 cut(s)	98, 379
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	2 cut(s)	419, 878
BsnI	GGCC	6 cut(s)	216, 353, 458, 559, 730, 1019
Bsp1286I	GDGCHC	2 cut(s)	501, 685
Bsp13I	TCCGGA	1 cut(s)	804
Bsp1407I	TGTACA	1 cut(s)	591
Bsp143I	GATC	4 cut(s)	12, 22, 409, 703
Bsp19I	CCATGG	2 cut(s)	459, 554
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	6 cut(s)	216, 353, 458, 559, 730, 1019
BspCNI	CTCAG	1 cut(s)	48
BspEI	TCCGGA	1 cut(s)	804
BspLI	GGNNCC	1 cut(s)	24
BspPI	GGATC	3 cut(s)	17, 30, 711
BsrDI	GCAATG	1 cut(s)	669
BsrGI	TGTACA	1 cut(s)	591
BsrI	ACTGG	3 cut(s)	45, 846, 953
BssECI	CCNNGG	2 cut(s)	459, 554
BssMI	GATC	4 cut(s)	12, 22, 409, 703
BssSI	CACGAG	1 cut(s)	191
BssT1I	CCWWGG	2 cut(s)	459, 554
Bst2BI	CACGAG	1 cut(s)	191
Bst2UI	CCWGG	2 cut(s)	472, 761
Bst4CI	ACNGT	1 cut(s)	591
Bst6I	CTCTTC	2 cut(s)	780, 928
BstAUI	TGTACA	1 cut(s)	591
BstBAI	YACGTR	1 cut(s)	349
BstC8I	GCNNGC	5 cut(s)	229, 242, 477, 667, 812
BstDEI	CTNAG	4 cut(s)	35, 621, 817, 957
BstDSI	CCRYGG	2 cut(s)	459, 554
BstEII	GGTNACC	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	124, 748
BstKTI	GATC	4 cut(s)	15, 25, 412, 706
BstMAI	GTCTC	2 cut(s)	98, 379
BstMBI	GATC	4 cut(s)	12, 22, 409, 703
BstMWI	GCNNNNNNNGC	4 cut(s)	237, 671, 680, 958
BstNI	CCWGG	2 cut(s)	472, 761
BstPI	GGTNACC	1 cut(s)	44
BstSCI	CCNGG	4 cut(s)	18, 435, 470, 759
BstV1I	GCAGC	1 cut(s)	616
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BsuRI	GGCC	6 cut(s)	216, 353, 458, 559, 730, 1019
BtgI	CCRYGG	2 cut(s)	459, 554
BtrI	CACGTC	1 cut(s)	92
BtsCI	GGATG	2 cut(s)	124, 748
BtsIMutI	CAGTG	1 cut(s)	417
Cac8I	GCNNGC	5 cut(s)	229, 242, 477, 667, 812
Cfr13I	GGNCC	2 cut(s)	938, 1017
Csp6I	GTAC	5 cut(s)	346, 519, 592, 879, 1055
CviAII	CATG	7 cut(s)	175, 237, 460, 555, 824, 905, 1072
CviQI	GTAC	5 cut(s)	346, 519, 592, 879, 1055
DdeI	CTNAG	4 cut(s)	35, 621, 817, 957
DpnI	GATC	4 cut(s)	14, 24, 411, 705
DpnII	GATC	4 cut(s)	12, 22, 409, 703
EaeI	YGGCCR	1 cut(s)	557
Eam1104I	CTCTTC	2 cut(s)	780, 928
EarI	CTCTTC	2 cut(s)	780, 928
EciI	GGCGGA	1 cut(s)	15
Ecl136II	GAGCTC	2 cut(s)	499, 683
Eco130I	CCWWGG	2 cut(s)	459, 554
Eco24I	GRGCYC	2 cut(s)	501, 685
Eco32I	GATATC	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	938
Eco53kI	GAGCTC	2 cut(s)	499, 683
Eco57I	CTGAAG	2 cut(s)	654, 873
Eco91I	GGTNACC	1 cut(s)	44
EcoICRI	GAGCTC	2 cut(s)	499, 683
EcoO109I	RGGNCCY	1 cut(s)	938
EcoO65I	GGTNACC	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	422
EcoRII	CCWGG	2 cut(s)	470, 759
EcoRV	GATATC	1 cut(s)	447
EcoT14I	CCWWGG	2 cut(s)	459, 554
EcoT38I	GRGCYC	2 cut(s)	501, 685
ErhI	CCWWGG	2 cut(s)	459, 554
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	7 cut(s)	178, 240, 463, 558, 827, 908, 1075
FalI	AAGNNNNNCTT	4 cut(s)	194, 226, 925, 957
FaqI	GGGAC	2 cut(s)	419, 878
FatI	CATG	7 cut(s)	174, 236, 459, 554, 823, 904, 1071
Fnu4HI	GCNGC	1 cut(s)	605
FokI	GGATG	2 cut(s)	111, 755
FriOI	GRGCYC	2 cut(s)	501, 685
Fsp4HI	GCNGC	1 cut(s)	605
FspBI	CTAG	1 cut(s)	690
GluI	GCNGC	1 cut(s)	605
HaeIII	GGCC	6 cut(s)	216, 353, 458, 559, 730, 1019
HapII	CCGG	3 cut(s)	20, 437, 805
Hin1II	CATG	7 cut(s)	178, 240, 463, 558, 827, 908, 1075
HinfI	GANTC	2 cut(s)	311, 335
HpaII	CCGG	3 cut(s)	20, 437, 805
HphI	GGTGA	4 cut(s)	56, 208, 292, 353
Hpy188I	TCNGA	4 cut(s)	38, 316, 547, 930
Hpy188III	TCNNGA	4 cut(s)	74, 413, 580, 805
HpyAV	CCTTC	9 cut(s)	125, 243, 361, 448, 560, 924, 951, 1008, 1112
HpyCH4III	ACNGT	1 cut(s)	591
HpyCH4IV	ACGT	2 cut(s)	91, 348
HpyCH4V	TGCA	3 cut(s)	121, 485, 908
HpyF10VI	GCNNNNNNNGC	4 cut(s)	237, 671, 680, 958
HpyF3I	CTNAG	4 cut(s)	35, 621, 817, 957
HpySE526I	ACGT	2 cut(s)	91, 348
Hsp92II	CATG	7 cut(s)	178, 240, 463, 558, 827, 908, 1075
Kpn2I	TCCGGA	1 cut(s)	804
Kzo9I	GATC	4 cut(s)	12, 22, 409, 703
LmnI	GCTCC	4 cut(s)	473, 680, 807, 931
Lsp1109I	GCAGC	1 cut(s)	616
LweI	GCATC	3 cut(s)	472, 733, 862
MaeI	CTAG	1 cut(s)	690
MaeII	ACGT	2 cut(s)	91, 348
MaeIII	GTNAC	3 cut(s)	44, 783, 1063
MalI	GATC	4 cut(s)	14, 24, 411, 705
MboI	GATC	4 cut(s)	12, 22, 409, 703
MboII	GAAGA	7 cut(s)	191, 407, 647, 656, 767, 879, 945
MfeI	CAATTG	1 cut(s)	284
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	2 cut(s)	501, 685
MlsI	TGGCCA	1 cut(s)	559
MluCI	AATT	7 cut(s)	58, 263, 284, 321, 422, 570, 798
MluNI	TGGCCA	1 cut(s)	559
Mox20I	TGGCCA	1 cut(s)	559
MroI	TCCGGA	1 cut(s)	804
MroXI	GAANNNNTTC	1 cut(s)	81
MscI	TGGCCA	1 cut(s)	559
MseI	TTAA	2 cut(s)	855, 1008
MslI	CAYNNNNRTG	1 cut(s)	1070
Msp20I	TGGCCA	1 cut(s)	559
MspA1I	CMGCKG	1 cut(s)	1042
MspI	CCGG	3 cut(s)	20, 437, 805
MspR9I	CCNGG	4 cut(s)	20, 437, 472, 761
MunI	CAATTG	1 cut(s)	284
MvaI	CCWGG	2 cut(s)	472, 761
MwoI	GCNNNNNNNGC	4 cut(s)	237, 671, 680, 958
NciI	CCSGG	2 cut(s)	20, 437
NcoI	CCATGG	2 cut(s)	459, 554
NdeII	GATC	4 cut(s)	12, 22, 409, 703
NlaIII	CATG	7 cut(s)	178, 240, 463, 558, 827, 908, 1075
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	2 cut(s)	44, 1063
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	2 cut(s)	311, 335
PfoI	TCCNGGA	1 cut(s)	435
PkrI	GCNGC	1 cut(s)	606
Ppu21I	YACGTR	1 cut(s)	349
PpuMI	RGGWCCY	1 cut(s)	938
Psp124BI	GAGCTC	2 cut(s)	501, 685
Psp5II	RGGWCCY	1 cut(s)	938
Psp6I	CCWGG	2 cut(s)	470, 759
PspEI	GGTNACC	1 cut(s)	44
PspGI	CCWGG	2 cut(s)	470, 759
PspN4I	GGNNCC	1 cut(s)	24
PspPI	GGNCC	2 cut(s)	938, 1017
PspPPI	RGGWCCY	1 cut(s)	938
PsrI	GAACNNNNNNTAC	2 cut(s)	502, 534
PsuI	RGATCY	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	1042
RsaI	GTAC	5 cut(s)	347, 520, 593, 880, 1056
RsaNI	GTAC	5 cut(s)	346, 519, 592, 879, 1055
RseI	CAYNNNNRTG	1 cut(s)	1070
SacI	GAGCTC	2 cut(s)	501, 685
SaqAI	TTAA	2 cut(s)	855, 1008
SatI	GCNGC	1 cut(s)	605
Sau3AI	GATC	4 cut(s)	12, 22, 409, 703
Sau96I	GGNCC	2 cut(s)	938, 1017
ScaI	AGTACT	1 cut(s)	880
ScrFI	CCNGG	4 cut(s)	20, 437, 472, 761
SduI	GDGCHC	2 cut(s)	501, 685
SfaNI	GCATC	3 cut(s)	472, 733, 862
SinI	GGWCC	1 cut(s)	938
SmiMI	CAYNNNNRTG	1 cut(s)	1070
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	7 cut(s)	58, 263, 284, 321, 422, 570, 798
SsiI	CCGC	1 cut(s)	26
SspI	AATATT	1 cut(s)	1025
SspMI	CTAG	1 cut(s)	690
SstI	GAGCTC	2 cut(s)	501, 685
StyD4I	CCNGG	4 cut(s)	18, 435, 470, 759
StyI	CCWWGG	2 cut(s)	459, 554
TaaI	ACNGT	1 cut(s)	591
TaiI	ACGT	2 cut(s)	94, 351
TaqI	TCGA	1 cut(s)	15
TasI	AATT	7 cut(s)	58, 263, 284, 321, 422, 570, 798
TatI	WGTACW	3 cut(s)	591, 878, 1054
TfiI	GAWTC	2 cut(s)	311, 335
Tru1I	TTAA	2 cut(s)	855, 1008
Tru9I	TTAA	2 cut(s)	855, 1008
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	2 cut(s)	44, 1063
TseI	GCWGC	1 cut(s)	604
Tsp45I	GTSAC	2 cut(s)	44, 1063
TspDTI	ATGAA	6 cut(s)	225, 467, 735, 873, 906, 1131
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	1 cut(s)	424
VpaK11BI	GGWCC	1 cut(s)	938
XapI	RAATTY	4 cut(s)	263, 321, 422, 570
XcmI	CCANNNNNNNNNTGG	2 cut(s)	37, 135
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	1 cut(s)	690
ZrmI	AGTACT	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.