Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8142490.1

Orthogroup ID

OG0003603

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 574

Gene Structure 574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8142490.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 353 bp

ataaaattccgtatgttgaatctggtgagtacgtggcctataataatgagaagggtggcgtgattgagagactgaaagaagatggcattgttgatctggacactgaattccaatcagtcccggaatggatatctatgaaggccatggttagctcctggcttgctgatgcaatcaagtatgagctctgggtgggaactgatggtacttctgcccaaactatatattgttctgatcttccgtggccaataggaaaagttttgttcttgaagcaactgtacaaagtcaagcagcaacttgggattactaaggacaatgctgaagaaatagaagaacaggtccattatttccattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009536 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_6 GST_N_4

Protein Analysis

116

Amino Acids

13.3

Weight (kDa)

4.65

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19080 AT2G19080
fragaria_vesca	FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590
malus_domestica	MD13G1245600.v1.1
prunus_persica	Prupe.1G079200_v2.0.a1
pyrus_communis	pycom13g21680 pycom16g21400
rosa_chinensis	RchiOBHm_Chr4g0400191 RchiOBHm_Chr7g0191431 RchiOBHm_Chr7g0191541
rosa_laevigata	RLG00000004440 RLG00000009205
rosa_multiflora	Rmu_co8142490.1_g000001 Rmu_sc0000037.1_g000022 Rmu_sc0002661.1_g000008 Rmu_sc0003634.1_g000010 Rmu_sc0010599.1_g000007
rosa_roxburghii	Rroxscaffold_5G00345140
rosa_rugosa	Rorug04G0023500 Rorug04G0023600 Rorug04G0023700
rosa_samantha	Rh4AG098800 Rh4BG097100 Rh4CG108300 Rh4DG093800 Rh7AG119100 Rh7CG124100 Rh7DG122200
rosa_wichuraiana	Rw4G008210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	2 cut(s)	5, 106
AcuI	CTGAAG	1 cut(s)	338
AfaI	GTAC	3 cut(s)	31, 204, 277
AgsI	TTSAA	2 cut(s)	19, 267
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	2 cut(s)	152, 183
AluI	AGCT	2 cut(s)	152, 183
Alw21I	GWGCWC	1 cut(s)	185
Alw26I	GTCTC	1 cut(s)	63
AoxI	GGCC	3 cut(s)	35, 140, 241
ApeKI	GCWGC	1 cut(s)	288
ApoI	RAATTY	2 cut(s)	5, 106
AspS9I	GGNCC	1 cut(s)	336
AsuC2I	CCSGG	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	336
BalI	TGGCCA	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	185
BarI	GAAGNNNNNNTAC	2 cut(s)	259, 291
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	300
BccI	CCATC	2 cut(s)	76, 193
BciT130I	CCWGG	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	63
BisI	GCNGC	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	290
Bme1390I	CCNGG	2 cut(s)	121, 156
Bme18I	GGWCC	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	336
BmrFI	CCNGG	2 cut(s)	121, 156
BmsI	GCATC	1 cut(s)	156
BpuMI	CCSGG	1 cut(s)	121
BsaAI	YACGTR	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	143, 238
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	143, 238
BseXI	GCAGC	1 cut(s)	300
BshFI	GGCC	3 cut(s)	37, 142, 243
BsiHKAI	GWGCWC	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	103
BsnI	GGCC	3 cut(s)	37, 142, 243
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp1407I	TGTACA	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	93, 231
Bsp19I	CCATGG	1 cut(s)	143
BspANI	GGCC	3 cut(s)	37, 142, 243
BsrGI	TGTACA	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	143, 238
BssMI	GATC	2 cut(s)	93, 231
BssT1I	CCWWGG	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	275
BstAUI	TGTACA	1 cut(s)	275
BstBAI	YACGTR	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	1 cut(s)	305
BstDSI	CCRYGG	2 cut(s)	143, 238
BstKTI	GATC	2 cut(s)	96, 234
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	2 cut(s)	93, 231
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	2 cut(s)	119, 154
BstV1I	GCAGC	1 cut(s)	300
BsuRI	GGCC	3 cut(s)	37, 142, 243
BtgI	CCRYGG	2 cut(s)	143, 238
BtsIMutI	CAGTG	1 cut(s)	101
Cac8I	GCNNGC	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	336
Csp6I	GTAC	3 cut(s)	30, 203, 276
CviAII	CATG	1 cut(s)	144
CviJI	RGCY	6 cut(s)	37, 142, 152, 159, 183, 243
CviKI_1	RGCY	6 cut(s)	37, 142, 152, 159, 183, 243
CviQI	GTAC	3 cut(s)	30, 203, 276
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	2 cut(s)	95, 233
DpnII	GATC	2 cut(s)	93, 231
EaeI	YGGCCR	1 cut(s)	241
Ecl136II	GAGCTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	185
Eco32I	GATATC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	336
Eco53kI	GAGCTC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	183
EcoRI	GAATTC	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	154
EcoRV	GATATC	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	143
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	1 cut(s)	147
FaiI	YATR	7 cut(s)	14, 41, 136, 145, 179, 220, 222
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	289
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	289
GluI	GCNGC	1 cut(s)	289
HaeIII	GGCC	3 cut(s)	37, 142, 243
HapII	CCGG	1 cut(s)	121
Hin1II	CATG	1 cut(s)	147
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	231
Hpy188III	TCNNGA	2 cut(s)	97, 264
HpyAV	CCTTC	2 cut(s)	45, 132
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	1 cut(s)	169
HpyF3I	CTNAG	1 cut(s)	305
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	93, 231
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	7 cut(s)	8, 82, 134, 141, 168, 171, 319
Lsp1109I	GCAGC	1 cut(s)	300
LweI	GCATC	1 cut(s)	156
MaeII	ACGT	1 cut(s)	32
MalI	GATC	2 cut(s)	95, 233
MboI	GATC	2 cut(s)	93, 231
MboII	GAAGA	4 cut(s)	91, 226, 331, 340
MhlI	GDGCHC	1 cut(s)	185
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	2 cut(s)	5, 106
MluNI	TGGCCA	1 cut(s)	243
Mox20I	TGGCCA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	243
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	2 cut(s)	121, 156
MvaI	CCWGG	1 cut(s)	156
NciI	CCSGG	1 cut(s)	121
NcoI	CCATGG	1 cut(s)	143
NdeII	GATC	2 cut(s)	93, 231
NlaIII	CATG	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	19
PfoI	TCCNGGA	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	290
Ppu21I	YACGTR	1 cut(s)	33
Psp124BI	GAGCTC	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	336
PsrI	GAACNNNNNNTAC	2 cut(s)	186, 218
RsaI	GTAC	3 cut(s)	31, 204, 277
RsaNI	GTAC	3 cut(s)	30, 203, 276
SacI	GAGCTC	1 cut(s)	185
SatI	GCNGC	1 cut(s)	289
Sau3AI	GATC	2 cut(s)	93, 231
Sau96I	GGNCC	1 cut(s)	336
ScrFI	CCNGG	2 cut(s)	121, 156
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	4 cut(s)	35, 154, 185, 338
SfaNI	GCATC	1 cut(s)	156
SinI	GGWCC	1 cut(s)	336
Sse9I	AATT	2 cut(s)	5, 106
SstI	GAGCTC	1 cut(s)	185
StyD4I	CCNGG	2 cut(s)	119, 154
StyI	CCWWGG	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	275
TaiI	ACGT	1 cut(s)	35
TasI	AATT	2 cut(s)	5, 106
TatI	WGTACW	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	19
TscAI	CASTG	1 cut(s)	108
TseI	GCWGC	1 cut(s)	288
TspDTI	ATGAA	1 cut(s)	151
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	336
XapI	RAATTY	2 cut(s)	5, 106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.