Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003603

Physical Location & Seq

Genomic Coordinates Reverse (-)

3364360 .. 3367464

Gene Structure 3105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0023700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3105 bp

ATGTCCAAAGCTACCAGCCTGCATGCAAAATATGGGAGCATTGAGTTGGTACTTGATGTTCCCAGCAGTTGTCTAGGCATAAGCAAAAGAAAATGGCATTCTGCTTTCCTCACCATATACTGCTCTAGAGCCTTCCTGTCTTTACCACCTTCATCTCAACCCAAAGACACCAAAGCCACAAAAGCCACATTCTTATCGCGCACAGTCTCATACTCCATTGTTAGTGTTGAATCAGTTTCTGTGCCAGCCATTAATGGCTTCAAAGCTGATCAAAAATGCCTCACTGAGCTAGTGAAGGAGAAAAAACTCAACCAGCTTCTGGAGCTGGGAGGGGTTGAAGAAGTGGCATCAGCTCTCAAAACTGATGCAGTGCACGGAATTAATCCTGATGATGCTGACGACATTGCCTCCAGGCATGAAGCATATGGTTTCAACACCTACAAGAAACCTCCAACGCAAGGATTCCTCCATTTTGTGTGGGAAGCCTTCAAAGACCTCACAATCCTAATCCTCTTGGGATGTGCTGCGCTTTCTCTTGGTTTCGGCATTAAAGAGCATGGATTGAAAGAAGGTTGGATTGACGGTGGAAGCATTTGTCTCGCGGTCATTCTGGTCATTTCTGTTTCAGCCATAAGCAACTACAGACAGAGCAGACAGTTTGACAAGCTGTCGAAAGTCAGCAACAATCTCCAGATTGAGGCTGTGAGAAATGGAAGGCGCCAACTGATTTCAATATTCGAAATTGTGGTGGGTGATGTCATCTGCTTGAAAATTGGAGATCAAGTTCCAGCTGATGGATTACTTCTAGAAGGCCACTCTTTATCAGTAGACGAATCAAGCATGACAGGGGAGAGCGACCATGTTGAGATTAGTGTCACTGAGAATCCTTTCTTGTTCTCTGGGACTAAAATAGCTGATGGTTATGGTCGCATGCTTGTCACATCGGTCGGGATGAACACAAATTGGGGTGAAATGATGAGCCAAATTAGCCAAGACACCGGTGAAAAGACACCCCTGCAAGCACGTCTAGACAAGCTAACTTCTTCGATAGGTAAAGTTGGTTTGGCAGTTGCTTTCTTTGTTCTTGTAGTCATGTTGGTCAGATACTTCACAGGAAACACCGAGGATGAGAATGGAAACAAAGAGTACAATGGCAGCAAGACCAAATCTGATGACATAATAAATGCTGTCATTGGGATTGTAGCAGCAGCAGTTACAATTGTTGTGGTAGCAATTCCAGAAGGTCTACCATTAGCTGTGACTCTCACTCTTGCATATTCCATGAAGAGAATGATGGTTGATAATGCAATGGTCCGGAAGCTCTCTGCTTGTGAGACCATGGGATCTGCTACAACAATTTGTACCGATAAAACAGGCACTCTGACCATGAACCAGATGAAGGTAACTAAGTTTTGGTTGGGGAAAGAATCTGTGGAAGAAGAAGCTTATTCATCTATTTCTCCTTACGTTCTCAACTTGATCCAAGAAGGGGTTTCTCTCAACACAACTGGTAGTGTGTACAGGCCTAGCTTGGACTCCAAAATTGAGATCTCTGGCAGTCCCACTGAAAAGGCTATTCTTTCATGGGCTGTACATGGATCGGAGATGGATATGGAGAAAGTGGTGAAGAGTTGTAGCATTCTCCACGTTGAAGCCTTTAATTCGAAGAAGAAACAAAGCGGAGTTCTGGTGAAGAGAAAGGCAGATAACTCAATCCATGTACACTGGAAAGGAGCAGCAGAGATGATACTAGCAATGTGCAAAAGCTACTACAACGCCACTGGAGTTGTTAAGGATATGGATGAGAATGAAAAAAGGAACTTTGAGCATATTATTCAAGGTATGGCAGCTAGCAGTCTCAGATGCATAGCATTTGCACACAAACAAGTTCCAGAAGAGGAGCAACTAAATGCAGACCAGAAAGTTGTGCTAAAGGAAGATGGATTGACCCTATTGGGACTTGTGGGCCTTAAAGATCCATGTCGTCCAGGTGTGAGGAAAGCAGTTGAAGATTGCCAATATGCAGGGGTGAACGTCAGAATGATTACTGGAGACAATGTTTTCACTGCAAAAGCTATAGCCACTGAATGTGGGATACTCAGGCCTGGTCAGGACATGCTCGGAGCAGTGATAGAAGGTGTCGAATTTCGCAACTACACGCCAGAAGAGAGAATGGAGAAAGTTGAGAAAATTGCTGTGATGGCAAGGTCTTCTCCGTTTGATAAGCTTCTAATGGTGCAATGCTTGAAACAGAAAGGTCATGTAGTTGCAGTGACCGGTGATGGCACCAATGATGCACCAGCACTGAAAGAAGCTGATATAGGACTTTCTATGGGGATTCAAGGAACAGAAGTGGCTAAAGAGAGCTCAGATATTGTGATCATGGATGATAACTTTGCTTCAGTTGCGACAGTTTTGATGTGGGGAAGATGTGTGTATAATAATATCCAGAAGTTCATCCAATTCCAACTCACCGTCAATGTTGCAGCTCTTGTGATCAACTTTGTTGCGGCAGTTTCAGCAGGTCAAGTCCCATTAACAGCAGTTCAGTTATTGTGGGTCAACTTGATCATGGACACACTTGGAGCTCTTGCTCTTGCCACAGAAAAACCGACAAGAGAACTTATGGAGAAGCCACCAGTGGGAAGGACGGCACCTCTCATCACAAACATCATGTGGAGGAACCTCTTGCCTCAAGCACTGTATCAAATAACAGTCCTATTGATCTTACAATTCAGGGGCAAAGCAATCTTTGGTGTCAGTGATAAGGTAAAGGACACATTGATCTTCAACACTTTTGTGCTTTGCCAGGTGTTCAATGAGTTCAATGCGAGGAAGCTAGAGAAGAAGAATGTGTTCAAAGGAATACATACCAATAAGTTGTTCATGGGGATCATTGCAGTGACAATTGTTCTTCAGGTCGTGATGGTGGAGGTTCTCAAGAAATTTGCAGATACAGAGAGGTTGAATTGGGGACAATGGGGTGTATGCATAGGGATTGCAGTCATCTCTTGGCCAATTGGTTGGCTAGTCAAGTCTATACCTGTTCCAGAGAAACCCATTTTCAGCTATCTGAAGATGAAGAAAAATAAGCACCCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009536 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_6 GST_N_4

Protein Analysis

1034

Amino Acids

113.26

Weight (kDa)

8.1

Isoelectric Point (pI)

29.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	109 - 178	4.6e-14	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	234 - 329	1.1e-20	P-type ATPase actuator domain
Cation_ATPase	PF13246	492 - 663	1.1e-28	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	627 - 773	1e-12	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	844 - 1013	1.9e-48	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19080 AT2G19080
fragaria_vesca	FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590
malus_domestica	MD13G1245600.v1.1
prunus_persica	Prupe.1G079200_v2.0.a1
pyrus_communis	pycom13g21680 pycom16g21400
rosa_chinensis	RchiOBHm_Chr4g0400191 RchiOBHm_Chr7g0191431 RchiOBHm_Chr7g0191541
rosa_laevigata	RLG00000004440 RLG00000009205
rosa_multiflora	Rmu_co8142490.1_g000001 Rmu_sc0000037.1_g000022 Rmu_sc0002661.1_g000008 Rmu_sc0003634.1_g000010 Rmu_sc0010599.1_g000007
rosa_roxburghii	Rroxscaffold_5G00345140
rosa_rugosa	Rorug04G0023500 Rorug04G0023600 Rorug04G0023700
rosa_samantha	Rh4AG098800 Rh4BG097100 Rh4CG108300 Rh4DG093800 Rh7AG119100 Rh7CG124100 Rh7DG122200
rosa_wichuraiana	Rw4G008210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2513
AccB1I	GGYRCC	3 cut(s)	717, 2285, 2653
AccB7I	CCANNNNNTGG	2 cut(s)	319, 794
AccI	GTMKAC	2 cut(s)	828, 1246
AccII	CGCG	2 cut(s)	199, 602
AccIII	TCCGGA	1 cut(s)	1314
AciI	CCGC	3 cut(s)	602, 1680, 2510
AclWI	GGATC	5 cut(s)	1351, 1474, 1606, 1970, 2900
AcoI	YGGCCR	1 cut(s)	3014
AcsI	RAATTY	2 cut(s)	2144, 2945
AcuI	CTGAAG	3 cut(s)	2385, 2900, 3095
AcyI	GRCGYC	1 cut(s)	718
AfaI	GTAC	6 cut(s)	51, 1148, 1363, 1520, 1593, 1722
AfiI	CCNNNNNNNGG	7 cut(s)	319, 458, 697, 794, 1399, 1489, 2642
AgeI	ACCGGT	2 cut(s)	998, 2276
AhdI	GACNNNNNGTC	1 cut(s)	667
AjiI	CACGTC	1 cut(s)	1025
AjnI	CCWGG	4 cut(s)	410, 1987, 2104, 2808
AjuI	GAANNNNNNNTTGG	2 cut(s)	2867, 2899
AleI	CACNNNNGTG	1 cut(s)	2798
AloI	GAACNNNNNNTCC	2 cut(s)	768, 800
Alw21I	GWGCWC	3 cut(s)	375, 2369, 2590
Alw26I	GTCTC	5 cut(s)	211, 602, 1328, 1862, 2046
Alw44I	GTGCAC	1 cut(s)	371
AlwI	GGATC	5 cut(s)	1351, 1474, 1606, 1970, 2900
AlwNI	CAGNNNCTG	2 cut(s)	239, 319
Aor13HI	TCCGGA	1 cut(s)	1314
AoxI	GGCC	5 cut(s)	811, 1523, 1966, 2102, 3014
ApaLI	GTGCAC	1 cut(s)	371
ApeKI	GCWGC	7 cut(s)	524, 1155, 1205, 1208, 1736, 1847, 2486
ApoI	RAATTY	2 cut(s)	2144, 2945
AseI	ATTAAT	2 cut(s)	252, 381
AsiGI	ACCGGT	2 cut(s)	998, 2276
Asp700I	GAANNNNTTC	2 cut(s)	887, 2855
AspLEI	GCGC	3 cut(s)	201, 529, 720
AspS9I	GGNCC	2 cut(s)	1312, 1966
AsuHPI	GGTGA	9 cut(s)	103, 764, 980, 1013, 1636, 1702, 2041, 2291, 2464
AsuII	TTCGAA	2 cut(s)	738, 1664
AsuNHI	GCTAGC	1 cut(s)	1850
AvaII	GGWCC	1 cut(s)	1312
BaeGI	GKGCMC	1 cut(s)	375
BalI	TGGCCA	1 cut(s)	3016
BanI	GGYRCC	3 cut(s)	717, 2285, 2653
BanII	GRGCYC	2 cut(s)	2369, 2590
BbsI	GAAGAC	1 cut(s)	2202
Bbv12I	GWGCWC	3 cut(s)	375, 2369, 2590
BbvI	GCAGC	7 cut(s)	511, 1167, 1217, 1220, 1748, 1859, 2498
BccI	CCATC	8 cut(s)	788, 911, 1288, 1600, 1934, 2194, 2276, 2920
BceAI	ACGGC	1 cut(s)	2667
BcgI	CGANNNNNNTGC	2 cut(s)	580, 614
BciT130I	CCWGG	4 cut(s)	412, 1989, 2106, 2810
BciVI	GTATCC	1 cut(s)	2088
BclI	TGATCA	4 cut(s)	268, 2379, 2496, 2568
BcoDI	GTCTC	5 cut(s)	211, 602, 1328, 1862, 2046
BfmI	CTRYAG	2 cut(s)	640, 2076
BfoI	RGCGCY	1 cut(s)	721
BfuAI	ACCTGC	1 cut(s)	2513
BfuI	GTATCC	1 cut(s)	2088
BglII	AGATCT	1 cut(s)	1548
BisI	GCNGC	8 cut(s)	525, 1156, 1206, 1209, 1737, 1848, 2487, 2511
BlsI	GCNGC	8 cut(s)	526, 1157, 1207, 1210, 1738, 1849, 2488, 2512
Bme1390I	CCNGG	4 cut(s)	412, 1989, 2106, 2810
Bme18I	GGWCC	1 cut(s)	1312
BmeRI	GACNNNNNGTC	1 cut(s)	667
BmgBI	CACGTC	1 cut(s)	1025
BmgT120I	GGNCC	2 cut(s)	1312, 1966
BmiI	GGNNCC	4 cut(s)	719, 2287, 2655, 2684
BmrFI	CCNGG	4 cut(s)	412, 1989, 2106, 2810
BmsI	GCATC	5 cut(s)	355, 356, 382, 1853, 2284
BmtI	GCTAGC	1 cut(s)	1854
BpiI	GAAGAC	1 cut(s)	2202
BpmI	CTGGAG	5 cut(s)	341, 394, 674, 1803, 2070
Bpu14I	TTCGAA	2 cut(s)	738, 1664
BpuEI	CTTGAG	2 cut(s)	2679, 2924
BsaHI	GRCGYC	1 cut(s)	718
BsaI	GGTCTC	1 cut(s)	1328
BsaJI	CCNNGG	2 cut(s)	1122, 1338
BsaWI	WCCGGW	3 cut(s)	998, 1314, 2276
BsaXI	ACNNNNNCTCC	8 cut(s)	392, 422, 768, 798, 1674, 1704, 2043, 2073
Bsc4I	CCNNNNNNNGG	7 cut(s)	319, 458, 697, 794, 1399, 1489, 2642
Bse118I	RCCGGY	2 cut(s)	998, 2276
Bse1I	ACTGG	5 cut(s)	1513, 1730, 1786, 2053, 2639
Bse3DI	GCAATG	5 cut(s)	402, 1314, 1761, 2246, 2895
BseAI	TCCGGA	1 cut(s)	1314
BseBI	CCWGG	4 cut(s)	412, 1989, 2106, 2810
BseDI	CCNNGG	2 cut(s)	1122, 1338
BseGI	GGATG	6 cut(s)	524, 957, 1132, 1807, 2392, 2457
BseLI	CCNNNNNNNGG	7 cut(s)	319, 458, 697, 794, 1399, 1489, 2642
BseMI	GCAATG	5 cut(s)	402, 1314, 1761, 2246, 2895
BseMII	CTCAG	5 cut(s)	276, 870, 1873, 2113, 2382
BseNI	ACTGG	5 cut(s)	1513, 1730, 1786, 2053, 2639
BseRI	GAGGAG	1 cut(s)	1913
BseSI	GKGCMC	1 cut(s)	375
BseXI	GCAGC	7 cut(s)	511, 1167, 1217, 1220, 1748, 1859, 2498
BseYI	CCCAGC	2 cut(s)	62, 325
Bsh1236I	CGCG	2 cut(s)	199, 602
Bsh1285I	CGRYCG	1 cut(s)	948
BshFI	GGCC	5 cut(s)	813, 1525, 1968, 2104, 3016
BshNI	GGYRCC	3 cut(s)	717, 2285, 2653
BshTI	ACCGGT	2 cut(s)	998, 2276
BsiEI	CGRYCG	1 cut(s)	948
BsiHKAI	GWGCWC	3 cut(s)	375, 2369, 2590
BsiSI	CCGG	3 cut(s)	999, 1315, 2277
BslFI	GGGAC	5 cut(s)	916, 1545, 1971, 2516, 2988
BslI	CCNNNNNNNGG	7 cut(s)	319, 458, 697, 794, 1399, 1489, 2642
BsmAI	GTCTC	5 cut(s)	211, 602, 1328, 1862, 2046
BsmFI	GGGAC	5 cut(s)	916, 1545, 1971, 2516, 2988
BsmI	GAATGC	2 cut(s)	97, 1638
BsnI	GGCC	5 cut(s)	813, 1525, 1968, 2104, 3016
Bso31I	GGTCTC	1 cut(s)	1328
Bsp119I	TTCGAA	2 cut(s)	738, 1664
Bsp1286I	GDGCHC	3 cut(s)	375, 2369, 2590
Bsp13I	TCCGGA	1 cut(s)	1314
Bsp1407I	TGTACA	3 cut(s)	1518, 1591, 1720
Bsp19I	CCATGG	1 cut(s)	1338
BspACI	CCGC	3 cut(s)	602, 1680, 2510
BspANI	GGCC	5 cut(s)	813, 1525, 1968, 2104, 3016
BspCNI	CTCAG	5 cut(s)	277, 871, 1872, 2112, 2381
BspEI	TCCGGA	1 cut(s)	1314
BspFNI	CGCG	2 cut(s)	199, 602
BspLI	GGNNCC	4 cut(s)	719, 2287, 2655, 2684
BspMI	ACCTGC	1 cut(s)	2513
BspOI	GCTAGC	1 cut(s)	1854
BspPI	GGATC	5 cut(s)	1351, 1474, 1606, 1970, 2900
BspT104I	TTCGAA	2 cut(s)	738, 1664
BspT107I	GGYRCC	3 cut(s)	717, 2285, 2653
BspTNI	GGTCTC	1 cut(s)	1328
BsrDI	GCAATG	5 cut(s)	402, 1314, 1761, 2246, 2895
BsrFI	RCCGGY	2 cut(s)	998, 2276
BsrGI	TGTACA	3 cut(s)	1518, 1591, 1720
BsrI	ACTGG	5 cut(s)	1513, 1730, 1786, 2053, 2639
BssAI	RCCGGY	2 cut(s)	998, 2276
BssECI	CCNNGG	2 cut(s)	1122, 1338
BssNI	GRCGYC	1 cut(s)	718
BssT1I	CCWWGG	1 cut(s)	1338
Bst2UI	CCWGG	4 cut(s)	412, 1989, 2106, 2810
Bst4CI	ACNGT	7 cut(s)	205, 584, 657, 2413, 2476, 2703, 2716
Bst6I	CTCTTC	5 cut(s)	1280, 1622, 1688, 1890, 2160
BstACI	GRCGYC	1 cut(s)	718
BstAUI	TGTACA	3 cut(s)	1518, 1591, 1720
BstBI	TTCGAA	2 cut(s)	738, 1664
BstC8I	GCNNGC	6 cut(s)	20, 24, 246, 932, 1020, 1852
BstDEI	CTNAG	6 cut(s)	285, 879, 1407, 1859, 2099, 2368
BstDSI	CCRYGG	1 cut(s)	1338
BstF5I	GGATG	6 cut(s)	524, 957, 1132, 1807, 2392, 2457
BstFNI	CGCG	2 cut(s)	199, 602
BstH2I	RGCGCY	1 cut(s)	721
BstHHI	GCGC	3 cut(s)	201, 529, 720
BstMAI	GTCTC	5 cut(s)	211, 602, 1328, 1862, 2046
BstMCI	CGRYCG	1 cut(s)	948
BstMWI	GCNNNNNNNGC	6 cut(s)	182, 322, 987, 2201, 2405, 2519
BstNI	CCWGG	4 cut(s)	412, 1989, 2106, 2810
BstNSI	RCATGY	3 cut(s)	26, 934, 2119
BstSCI	CCNGG	4 cut(s)	410, 1987, 2104, 2808
BstSFI	CTRYAG	2 cut(s)	640, 2076
BstSLI	GKGCMC	1 cut(s)	375
BstUI	CGCG	2 cut(s)	199, 602
BstV1I	GCAGC	7 cut(s)	511, 1167, 1217, 1220, 1748, 1859, 2498
BstV2I	GAAGAC	1 cut(s)	2202
BstX2I	RGATCY	3 cut(s)	1343, 1548, 1975
BstXI	CCANNNNNNTGG	1 cut(s)	3024
BstYI	RGATCY	3 cut(s)	1343, 1548, 1975
BsuI	GTATCC	1 cut(s)	2088
BsuRI	GGCC	5 cut(s)	813, 1525, 1968, 2104, 3016
BtgI	CCRYGG	1 cut(s)	1338
BtrI	CACGTC	1 cut(s)	1025
BtsCI	GGATG	6 cut(s)	524, 957, 1132, 1807, 2392, 2457
BtsI	GCAGTG	5 cut(s)	375, 2064, 2133, 2277, 2907
BveI	ACCTGC	1 cut(s)	2513
Cac8I	GCNNGC	6 cut(s)	20, 24, 246, 932, 1020, 1852
CaiI	CAGNNNCTG	2 cut(s)	239, 319
CfoI	GCGC	3 cut(s)	201, 529, 720
Cfr10I	RCCGGY	2 cut(s)	998, 2276
Cfr13I	GGNCC	2 cut(s)	1312, 1966
Csp6I	GTAC	6 cut(s)	50, 1147, 1362, 1519, 1592, 1721
CspAI	ACCGGT	2 cut(s)	998, 2276
CspCI	CAANNNNNGTGG	4 cut(s)	1206, 1241, 1768, 1803
CviQI	GTAC	6 cut(s)	50, 1147, 1362, 1519, 1592, 1721
DdeI	CTNAG	6 cut(s)	285, 879, 1407, 1859, 2099, 2368
DinI	GGCGCC	1 cut(s)	719
DriI	GACNNNNNGTC	1 cut(s)	667
EaeI	YGGCCR	1 cut(s)	3014
Eam1104I	CTCTTC	5 cut(s)	1280, 1622, 1688, 1890, 2160
Eam1105I	GACNNNNNGTC	1 cut(s)	667
EarI	CTCTTC	5 cut(s)	1280, 1622, 1688, 1890, 2160
Ecl136II	GAGCTC	2 cut(s)	2367, 2588
Eco130I	CCWWGG	1 cut(s)	1338
Eco147I	AGGCCT	2 cut(s)	1525, 2104
Eco24I	GRGCYC	2 cut(s)	2369, 2590
Eco31I	GGTCTC	1 cut(s)	1328
Eco47I	GGWCC	1 cut(s)	1312
Eco53kI	GAGCTC	2 cut(s)	2367, 2588
Eco57I	CTGAAG	3 cut(s)	2385, 2900, 3095
EcoICRI	GAGCTC	2 cut(s)	2367, 2588
EcoRII	CCWGG	4 cut(s)	410, 1987, 2104, 2808
EcoT14I	CCWWGG	1 cut(s)	1338
EcoT22I	ATGCAT	2 cut(s)	1868, 2993
EcoT38I	GRGCYC	2 cut(s)	2369, 2590
EgeI	GGCGCC	1 cut(s)	719
EheI	GGCGCC	1 cut(s)	719
ErhI	CCWWGG	1 cut(s)	1338
FaqI	GGGAC	5 cut(s)	916, 1545, 1971, 2516, 2988
FauNDI	CATATG	1 cut(s)	424
FbaI	TGATCA	4 cut(s)	268, 2379, 2496, 2568
FblI	GTMKAC	2 cut(s)	828, 1246
Fnu4HI	GCNGC	8 cut(s)	525, 1156, 1206, 1209, 1737, 1848, 2487, 2511
FokI	GGATG	6 cut(s)	531, 964, 1139, 1814, 2399, 2444
FriOI	GRGCYC	2 cut(s)	2369, 2590
Fsp4HI	GCNGC	8 cut(s)	525, 1156, 1206, 1209, 1737, 1848, 2487, 2511
GlaI	GCGC	3 cut(s)	200, 528, 719
GluI	GCNGC	8 cut(s)	525, 1156, 1206, 1209, 1737, 1848, 2487, 2511
GsaI	CCCAGC	2 cut(s)	66, 329
GsuI	CTGGAG	5 cut(s)	341, 394, 674, 1803, 2070
HaeII	RGCGCY	1 cut(s)	721
HaeIII	GGCC	5 cut(s)	813, 1525, 1968, 2104, 3016
HapII	CCGG	3 cut(s)	999, 1315, 2277
HhaI	GCGC	3 cut(s)	201, 529, 720
Hin1I	GRCGYC	1 cut(s)	718
Hin6I	GCGC	3 cut(s)	199, 527, 718
HinP1I	GCGC	3 cut(s)	199, 527, 718
HincII	GTYRAC	1 cut(s)	2563
HindII	GTYRAC	1 cut(s)	2563
HindIII	AAGCTT	2 cut(s)	1443, 2225
HinfI	GANTC	8 cut(s)	230, 462, 833, 883, 1261, 1427, 1535, 2338
HpaII	CCGG	3 cut(s)	999, 1315, 2277
HphI	GGTGA	9 cut(s)	103, 764, 980, 1013, 1636, 1702, 2041, 2291, 2464
Hpy166II	GTNNAC	7 cut(s)	373, 829, 1247, 1519, 1723, 2032, 2563
Hpy188I	TCNGA	9 cut(s)	1103, 1171, 1383, 1603, 1862, 2039, 2123, 2371, 3075
Hpy8I	GTNNAC	7 cut(s)	373, 829, 1247, 1519, 1723, 2032, 2563
HpyCH4III	ACNGT	7 cut(s)	205, 584, 657, 2413, 2476, 2703, 2716
HpyCH4IV	ACGT	4 cut(s)	1024, 1467, 1647, 2034
HpyF10VI	GCNNNNNNNGC	6 cut(s)	182, 322, 987, 2201, 2405, 2519
HpyF3I	CTNAG	6 cut(s)	285, 879, 1407, 1859, 2099, 2368
HpySE526I	ACGT	4 cut(s)	1024, 1467, 1647, 2034
Hsp92I	GRCGYC	1 cut(s)	718
HspAI	GCGC	3 cut(s)	199, 527, 718
KasI	GGCGCC	1 cut(s)	717
Kpn2I	TCCGGA	1 cut(s)	1314
Ksp22I	TGATCA	4 cut(s)	268, 2379, 2496, 2568
LmnI	GCTCC	6 cut(s)	36, 322, 1733, 1900, 2123, 2585
Lsp1109I	GCAGC	7 cut(s)	511, 1167, 1217, 1220, 1748, 1859, 2498
LweI	GCATC	5 cut(s)	355, 356, 382, 1853, 2284
MaeII	ACGT	4 cut(s)	1024, 1467, 1647, 2034
MaeIII	GTNAC	7 cut(s)	874, 937, 1213, 1258, 1402, 2272, 2902
MfeI	CAATTG	3 cut(s)	1218, 2907, 3018
MflI	RGATCY	3 cut(s)	1343, 1548, 1975
MhlI	GDGCHC	3 cut(s)	375, 2369, 2590
MlsI	TGGCCA	1 cut(s)	3016
MluNI	TGGCCA	1 cut(s)	3016
Mly113I	GGCGCC	1 cut(s)	718
MlyI	GAGTC	2 cut(s)	1255, 1529
MmeI	TCCRAC	3 cut(s)	476, 554, 2491
Mox20I	TGGCCA	1 cut(s)	3016
Mph1103I	ATGCAT	2 cut(s)	1868, 2993
MroI	TCCGGA	1 cut(s)	1314
MroXI	GAANNNNTTC	2 cut(s)	887, 2855
MscI	TGGCCA	1 cut(s)	3016
MseI	TTAA	7 cut(s)	252, 381, 549, 1659, 1791, 1971, 2537
MslI	CAYNNNNRTG	2 cut(s)	2798, 2900
Msp20I	TGGCCA	1 cut(s)	3016
MspA1I	CMGCKG	1 cut(s)	791
MspI	CCGG	3 cut(s)	999, 1315, 2277
MspR9I	CCNGG	4 cut(s)	412, 1989, 2106, 2810
MunI	CAATTG	3 cut(s)	1218, 2907, 3018
Mva1269I	GAATGC	2 cut(s)	97, 1638
MvaI	CCWGG	4 cut(s)	412, 1989, 2106, 2810
MvnI	CGCG	2 cut(s)	199, 602
MwoI	GCNNNNNNNGC	6 cut(s)	182, 322, 987, 2201, 2405, 2519
NarI	GGCGCC	1 cut(s)	718
NcoI	CCATGG	1 cut(s)	1338
NdeI	CATATG	1 cut(s)	424
NheI	GCTAGC	1 cut(s)	1850
NlaIV	GGNNCC	4 cut(s)	719, 2287, 2655, 2684
NmuCI	GTSAC	5 cut(s)	874, 937, 1258, 2272, 2902
NsiI	ATGCAT	2 cut(s)	1868, 2993
NspI	RCATGY	3 cut(s)	26, 934, 2119
NspV	TTCGAA	2 cut(s)	738, 1664
OliI	CACNNNNGTG	1 cut(s)	2798
PaeI	GCATGC	2 cut(s)	26, 934
PceI	AGGCCT	2 cut(s)	1525, 2104
PctI	GAATGC	2 cut(s)	97, 1638
PdmI	GAANNNNTTC	2 cut(s)	887, 2855
PfeI	GAWTC	6 cut(s)	230, 462, 833, 883, 1427, 2338
PflMI	CCANNNNNTGG	2 cut(s)	319, 794
PinAI	ACCGGT	2 cut(s)	998, 2276
PkrI	GCNGC	8 cut(s)	526, 1157, 1207, 1210, 1738, 1849, 2488, 2512
PleI	GAGTC	2 cut(s)	1255, 1529
PluTI	GGCGCC	1 cut(s)	721
PpsI	GAGTC	2 cut(s)	1255, 1529
PshBI	ATTAAT	2 cut(s)	252, 381
Psp124BI	GAGCTC	2 cut(s)	2369, 2590
Psp6I	CCWGG	4 cut(s)	410, 1987, 2104, 2808
PspFI	CCCAGC	2 cut(s)	62, 325
PspGI	CCWGG	4 cut(s)	410, 1987, 2104, 2808
PspN4I	GGNNCC	4 cut(s)	719, 2287, 2655, 2684
PspPI	GGNCC	2 cut(s)	1312, 1966
PsrI	GAACNNNNNNTAC	2 cut(s)	42, 74
PstNI	CAGNNNCTG	2 cut(s)	239, 319
PsuI	RGATCY	3 cut(s)	1343, 1548, 1975
PvuII	CAGCTG	1 cut(s)	791
RsaI	GTAC	6 cut(s)	51, 1148, 1363, 1520, 1593, 1722
RsaNI	GTAC	6 cut(s)	50, 1147, 1362, 1519, 1592, 1721
RseI	CAYNNNNRTG	2 cut(s)	2798, 2900
SacI	GAGCTC	2 cut(s)	2369, 2590
SaqAI	TTAA	7 cut(s)	252, 381, 549, 1659, 1791, 1971, 2537
SatI	GCNGC	8 cut(s)	525, 1156, 1206, 1209, 1737, 1848, 2487, 2511
Sau96I	GGNCC	2 cut(s)	1312, 1966
SchI	GAGTC	2 cut(s)	1255, 1529
ScrFI	CCNGG	4 cut(s)	412, 1989, 2106, 2810
SduI	GDGCHC	3 cut(s)	375, 2369, 2590
SfaNI	GCATC	5 cut(s)	355, 356, 382, 1853, 2284
SfcI	CTRYAG	2 cut(s)	640, 2076
SfoI	GGCGCC	1 cut(s)	719
SfuI	TTCGAA	2 cut(s)	738, 1664
SgrAI	CRCCGGYG	1 cut(s)	998
SinI	GGWCC	1 cut(s)	1312
SmiMI	CAYNNNNRTG	2 cut(s)	2798, 2900
SmlI	CTYRAG	2 cut(s)	2694, 2939
SmoI	CTYRAG	2 cut(s)	2694, 2939
SphI	GCATGC	2 cut(s)	26, 934
SseBI	AGGCCT	2 cut(s)	1525, 2104
SsiI	CCGC	3 cut(s)	602, 1680, 2510
SspDI	GGCGCC	1 cut(s)	717
SspI	AATATT	1 cut(s)	735
SstI	GAGCTC	2 cut(s)	2369, 2590
StuI	AGGCCT	2 cut(s)	1525, 2104
StyD4I	CCNGG	4 cut(s)	410, 1987, 2104, 2808
StyI	CCWWGG	1 cut(s)	1338
TaaI	ACNGT	7 cut(s)	205, 584, 657, 2413, 2476, 2703, 2716
TaiI	ACGT	4 cut(s)	1027, 1470, 1650, 2037
TaqI	TCGA	5 cut(s)	671, 738, 1046, 1664, 2142
TaqII	GACCGA	1 cut(s)	934
TatI	WGTACW	4 cut(s)	1146, 1518, 1591, 1720
TauI	GCSGC	1 cut(s)	2513
TfiI	GAWTC	6 cut(s)	230, 462, 833, 883, 1427, 2338
Tru1I	TTAA	7 cut(s)	252, 381, 549, 1659, 1791, 1971, 2537
Tru9I	TTAA	7 cut(s)	252, 381, 549, 1659, 1791, 1971, 2537
TseFI	GTSAC	5 cut(s)	874, 937, 1258, 2272, 2902
TseI	GCWGC	7 cut(s)	524, 1155, 1205, 1208, 1736, 1847, 2486
Tsp45I	GTSAC	5 cut(s)	874, 937, 1258, 2272, 2902
TspGWI	ACGGA	2 cut(s)	390, 2205
Van91I	CCANNNNNTGG	2 cut(s)	319, 794
VneI	GTGCAC	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	1312
VspI	ATTAAT	2 cut(s)	252, 381
XapI	RAATTY	2 cut(s)	2144, 2945
XbaI	TCTAGA	3 cut(s)	125, 805, 1027
XceI	RCATGY	3 cut(s)	26, 934, 2119
XmiI	GTMKAC	2 cut(s)	828, 1246
XmnI	GAANNNNTTC	2 cut(s)	887, 2855
Zsp2I	ATGCAT	2 cut(s)	1868, 2993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.