Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002661.1

Orthogroup ID

OG0003603

Physical Location & Seq

Genomic Coordinates Forward (+)

72857 .. 73132

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002661.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atggcaattgttgatttggacgccgagtttcattcagtcccggagtggatacctatgaatgctatggttactccaggcttgctgatgcaatcaggtatgagctctgggtgggaactgatggtacctcgatcggcccaaagtatatattgctctgatcttccatggccaataggaaaaattttgttcttgaagcaagtgtacaatgtaaagcagcaacttgggattactaaggacaatgccgaggaaatagaagaacaggtccattatttccactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009536 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_6 GST_N_4

Protein Analysis

91

Amino Acids

10.38

Weight (kDa)

4.73

Isoelectric Point (pI)

57.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19080 AT2G19080
fragaria_vesca	FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590
malus_domestica	MD13G1245600.v1.1
prunus_persica	Prupe.1G079200_v2.0.a1
pyrus_communis	pycom13g21680 pycom16g21400
rosa_chinensis	RchiOBHm_Chr4g0400191 RchiOBHm_Chr7g0191431 RchiOBHm_Chr7g0191541
rosa_laevigata	RLG00000004440 RLG00000009205
rosa_multiflora	Rmu_co8142490.1_g000001 Rmu_sc0000037.1_g000022 Rmu_sc0002661.1_g000008 Rmu_sc0003634.1_g000010 Rmu_sc0010599.1_g000007
rosa_roxburghii	Rroxscaffold_5G00345140
rosa_rugosa	Rorug04G0023500 Rorug04G0023600 Rorug04G0023700
rosa_samantha	Rh4AG098800 Rh4BG097100 Rh4CG108300 Rh4DG093800 Rh7AG119100 Rh7CG124100 Rh7DG122200
rosa_wichuraiana	Rw4G008210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	121
AccB1I	GGYRCC	1 cut(s)	121
AcoI	YGGCCR	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	2 cut(s)	123, 200
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	1 cut(s)	102
AluI	AGCT	1 cut(s)	102
Alw21I	GWGCWC	1 cut(s)	104
AoxI	GGCC	2 cut(s)	132, 164
ApeKI	GCWGC	1 cut(s)	211
ApoI	RAATTY	1 cut(s)	177
Asp718I	GGTACC	1 cut(s)	121
AspS9I	GGNCC	2 cut(s)	133, 259
AsuC2I	CCSGG	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	259
BalI	TGGCCA	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	104
BarI	GAAGNNNNNNTAC	2 cut(s)	182, 214
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	75
BciVI	GTATCC	1 cut(s)	42
BcnI	CCSGG	1 cut(s)	41
BfuI	GTATCC	1 cut(s)	42
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
Bme1390I	CCNGG	2 cut(s)	41, 75
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	2 cut(s)	133, 259
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	2 cut(s)	41, 75
BmsI	GCATC	1 cut(s)	75
BpmI	CTGGAG	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	41
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	161, 240
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	161, 240
BseXI	GCAGC	1 cut(s)	223
Bsh1285I	CGRYCG	1 cut(s)	131
BshFI	GGCC	2 cut(s)	134, 166
BshNI	GGYRCC	1 cut(s)	121
BsiEI	CGRYCG	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	23
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	134, 166
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp1407I	TGTACA	1 cut(s)	198
Bsp143I	GATC	2 cut(s)	128, 154
Bsp19I	CCATGG	1 cut(s)	161
BspANI	GGCC	2 cut(s)	134, 166
BspLI	GGNNCC	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	198
BssECI	CCNNGG	2 cut(s)	161, 240
BssMI	GATC	2 cut(s)	128, 154
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	21
BstAUI	TGTACA	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	1 cut(s)	228
BstDSI	CCRYGG	1 cut(s)	161
BstKTI	GATC	2 cut(s)	131, 157
BstMBI	GATC	2 cut(s)	128, 154
BstMCI	CGRYCG	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	2 cut(s)	39, 73
BstV1I	GCAGC	1 cut(s)	223
BsuI	GTATCC	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	134, 166
BtgI	CCRYGG	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	133, 259
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	122, 199
CviAII	CATG	1 cut(s)	162
CviJI	RGCY	4 cut(s)	78, 102, 134, 166
CviKI_1	RGCY	4 cut(s)	78, 102, 134, 166
CviQI	GTAC	2 cut(s)	122, 199
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	2 cut(s)	130, 156
DpnII	GATC	2 cut(s)	128, 154
EaeI	YGGCCR	1 cut(s)	164
Ecl136II	GAGCTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	259
Eco53kI	GAGCTC	1 cut(s)	102
EcoICRI	GAGCTC	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	161
FaeI	CATG	1 cut(s)	165
FaiI	YATR	6 cut(s)	56, 65, 98, 143, 145, 163
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	1 cut(s)	161
Fnu4HI	GCNGC	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	1 cut(s)	212
GluI	GCNGC	1 cut(s)	212
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	2 cut(s)	134, 166
HapII	CCGG	1 cut(s)	41
HgaI	GACGC	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	165
HpaII	CCGG	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	1 cut(s)	187
Hpy8I	GTNNAC	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	88
HpyF3I	CTNAG	1 cut(s)	228
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	165
KpnI	GGTACC	1 cut(s)	125
Kzo9I	GATC	2 cut(s)	128, 154
LpnPI	CCDG	6 cut(s)	54, 60, 78, 87, 90, 242
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	2 cut(s)	130, 156
MboI	GATC	2 cut(s)	128, 154
MboII	GAAGA	2 cut(s)	149, 263
MfeI	CAATTG	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	104
MlsI	TGGCCA	1 cut(s)	166
MluCI	AATT	2 cut(s)	6, 177
MluNI	TGGCCA	1 cut(s)	166
MnlI	CCTC	2 cut(s)	135, 235
Mox20I	TGGCCA	1 cut(s)	166
MscI	TGGCCA	1 cut(s)	166
Msp20I	TGGCCA	1 cut(s)	166
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	2 cut(s)	41, 75
MunI	CAATTG	1 cut(s)	6
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	75
NciI	CCSGG	1 cut(s)	41
NcoI	CCATGG	1 cut(s)	161
NdeII	GATC	2 cut(s)	128, 154
NlaIII	CATG	1 cut(s)	165
NlaIV	GGNNCC	1 cut(s)	123
NmeAIII	GCCGAG	2 cut(s)	49, 265
PctI	GAATGC	1 cut(s)	64
PfoI	TCCNGGA	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	213
Ple19I	CGATCG	1 cut(s)	131
Psp124BI	GAGCTC	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	2 cut(s)	133, 259
PsrI	GAACNNNNNNTAC	2 cut(s)	105, 137
PvuI	CGATCG	1 cut(s)	131
RsaI	GTAC	2 cut(s)	123, 200
RsaNI	GTAC	2 cut(s)	122, 199
SacI	GAGCTC	1 cut(s)	104
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	2 cut(s)	128, 154
Sau96I	GGNCC	2 cut(s)	133, 259
ScrFI	CCNGG	2 cut(s)	41, 75
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	5 cut(s)	55, 97, 104, 127, 261
SfaNI	GCATC	1 cut(s)	75
SinI	GGWCC	1 cut(s)	259
Sse9I	AATT	2 cut(s)	6, 177
SstI	GAGCTC	1 cut(s)	104
StyD4I	CCNGG	2 cut(s)	39, 73
StyI	CCWWGG	1 cut(s)	161
TaqI	TCGA	1 cut(s)	127
TasI	AATT	2 cut(s)	6, 177
TatI	WGTACW	1 cut(s)	198
TseI	GCWGC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	20, 71
VpaK11BI	GGWCC	1 cut(s)	259
XapI	RAATTY	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.