Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003603

Physical Location & Seq

Genomic Coordinates Reverse (-)

10275074 .. 10279154

Gene Structure 4081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17117

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGAAGAAGAATCTAGACCGACCCGTGTTCATTGTGGCCCACCCGGATCCGCCCCAACTCAGACTCAGTGTTCATTGTGTTCATTTTAGCACCAAGCCAATTTGCAAGACCCTGAAGAAACGTCCCCATTCCCACTTTGCTTCTGGCTCTGTGTTCGCTTCCGCAAAATCGGTTTCTGCAGTCTGCATGGAAGACTACTCTCTCGTGGTGAGGAAGCCCTGTTTCGGCCTCCCTACTGCTTGCCCTTCATGCTTGCCTGTCTACTTCTACCTCAAATTCGCTGACATTCCCTTTAAATTGGACTATAATCTTACCTACCCTGATTCTGATAAAATTCCGTATGTTGAATCTGGTGAGTACGTGGCCTATAATAATGAGAAGGGTGGCGTCATTGAGACACTAAAACAAGATGGCATTGTTGATTTGGACACCGAATTTCATTCAGTCCCAGAGTGGATACCCATGAATGCTATGGTTAACTCCTGGCTTGCTGATGCAATCAAGTACGAGCTCTGGGTGGGAACTGATGGTACATCTGCCCAAAGTATATATTGTTCTGATCTTCCATGGCCAATAGGAAAAATTTTGTTCTTGAAGCAAGTGTACAATGTAAAGAAGCAACTTGGGATTACTAAGGACAATGCCGAGGAAATGGAAGACCAGATATATAAGAGAGCCAGCAGTGCGTTTGGAGCTCTGTCTAGTACCTTGGTGGATCAGATGTTTTTATATGGAAACAGGCCATCAAGTTTGGATGCAGTCTTTCTGAGCCAGGCACTTATCACTCTTCAAGCATTACCAGAAACATCAATTCTCCATAACAAGCTGTTAGAACATGAGAACCTGGTTGGGTATGCCAATAGGACTAAAATGGCGCTTCTTGATGCGGGTACTTCATCTTCAGTCCCAAACTTCCATGCAAACCCTTCATCATCAGCTCCGAGAAAAGGTCCTTCAAACTGGCGTTCTAAGCCCATGACCAAAACCAAAAGGGGAAAAACAAAGGAGGAAGATTTTAAGAGAAGGGCCAAATATGTTTTTATAGCACAGCTGATTGCAGTAGTTCTTTATGTCACTCTCATGGATCAAACAGATGGGTTTGACGTTGAGGATGATGATGAAGACTTTGATTACAATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009536 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_6 GST_N_4

Protein Analysis

380

Amino Acids

42.7

Weight (kDa)

6.17

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_4	PF17172	82 - 175	2.9e-18	Glutathione S-transferase N-terminal domain
GST_C_6	PF17171	226 - 288	7e-12	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19080 AT2G19080
fragaria_vesca	FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590
malus_domestica	MD13G1245600.v1.1
prunus_persica	Prupe.1G079200_v2.0.a1
pyrus_communis	pycom13g21680 pycom16g21400
rosa_chinensis	RchiOBHm_Chr4g0400191 RchiOBHm_Chr7g0191431 RchiOBHm_Chr7g0191541
rosa_laevigata	RLG00000004440 RLG00000009205
rosa_multiflora	Rmu_co8142490.1_g000001 Rmu_sc0000037.1_g000022 Rmu_sc0002661.1_g000008 Rmu_sc0003634.1_g000010 Rmu_sc0010599.1_g000007
rosa_roxburghii	Rroxscaffold_5G00345140
rosa_rugosa	Rorug04G0023500 Rorug04G0023600 Rorug04G0023700
rosa_samantha	Rh4AG098800 Rh4BG097100 Rh4CG108300 Rh4DG093800 Rh7AG119100 Rh7CG124100 Rh7DG122200
rosa_wichuraiana	Rw4G008210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	261
AciI	CCGC	3 cut(s)	50, 162, 887
AclWI	GGATC	4 cut(s)	41, 54, 723, 1092
AcoI	YGGCCR	1 cut(s)	569
AcsI	RAATTY	4 cut(s)	275, 333, 434, 582
AcuI	CTGAAG	2 cut(s)	134, 885
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	6 cut(s)	359, 506, 532, 605, 706, 892
AfiI	CCNNNNNNNGG	2 cut(s)	224, 947
AgsI	TTSAA	4 cut(s)	347, 595, 791, 957
AjnI	CCWGG	3 cut(s)	482, 771, 843
AluBI	AGCT	5 cut(s)	511, 695, 826, 938, 1051
AluI	AGCT	5 cut(s)	511, 695, 826, 938, 1051
Alw21I	GWGCWC	2 cut(s)	513, 697
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	4 cut(s)	41, 54, 723, 1092
AoxI	GGCC	6 cut(s)	36, 226, 363, 569, 740, 1026
ApoI	RAATTY	4 cut(s)	275, 333, 434, 582
AspLEI	GCGC	1 cut(s)	877
AspS9I	GGNCC	3 cut(s)	37, 950, 1026
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	220, 365
AvaII	GGWCC	1 cut(s)	950
BalI	TGGCCA	1 cut(s)	571
BamHI	GGATCC	1 cut(s)	46
BanII	GRGCYC	2 cut(s)	513, 697
BarI	GAAGNNNNNNTAC	4 cut(s)	587, 619, 883, 915
BauI	CACGAG	1 cut(s)	203
BbsI	GAAGAC	3 cut(s)	198, 663, 1128
Bbv12I	GWGCWC	2 cut(s)	513, 697
BccI	CCATC	4 cut(s)	404, 521, 751, 1088
BciT130I	CCWGG	3 cut(s)	484, 773, 845
BciVI	GTATCC	1 cut(s)	450
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	2 cut(s)	14, 702
BfmI	CTRYAG	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	878
BfuI	GTATCC	1 cut(s)	450
Bme1390I	CCNGG	4 cut(s)	44, 484, 773, 845
Bme18I	GGWCC	1 cut(s)	950
BmgT120I	GGNCC	3 cut(s)	37, 950, 1026
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	4 cut(s)	44, 484, 773, 845
BmsI	GCATC	3 cut(s)	484, 745, 874
BpiI	GAAGAC	3 cut(s)	198, 663, 1128
BpuMI	CCSGG	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	387
BsaJI	CCNNGG	3 cut(s)	566, 645, 708
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 947
Bse1I	ACTGG	1 cut(s)	965
BseBI	CCWGG	3 cut(s)	484, 773, 845
BseDI	CCNNGG	3 cut(s)	566, 645, 708
BseGI	GGATG	2 cut(s)	760, 1117
BseLI	CCNNNNNNNGG	2 cut(s)	224, 947
BseMII	CTCAG	3 cut(s)	73, 79, 758
BseNI	ACTGG	1 cut(s)	965
BshFI	GGCC	6 cut(s)	38, 228, 365, 571, 742, 1028
BsiHKAI	GWGCWC	2 cut(s)	513, 697
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	3 cut(s)	108, 431, 890
BslI	CCNNNNNNNGG	2 cut(s)	224, 947
BsmAI	GTCTC	1 cut(s)	389
BsmFI	GGGAC	3 cut(s)	108, 431, 890
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	6 cut(s)	38, 228, 365, 571, 742, 1028
Bsp1286I	GDGCHC	2 cut(s)	513, 697
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	4 cut(s)	46, 559, 715, 1084
Bsp19I	CCATGG	1 cut(s)	566
BspACI	CCGC	3 cut(s)	50, 162, 887
BspANI	GGCC	6 cut(s)	38, 228, 365, 571, 742, 1028
BspCNI	CTCAG	3 cut(s)	72, 78, 759
BspLI	GGNNCC	1 cut(s)	48
BspMAI	CTGCAG	1 cut(s)	181
BspPI	GGATC	4 cut(s)	41, 54, 723, 1092
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	1 cut(s)	965
BssECI	CCNNGG	3 cut(s)	566, 645, 708
BssMI	GATC	4 cut(s)	46, 559, 715, 1084
BssNI	GRCGYC	1 cut(s)	387
BssSI	CACGAG	1 cut(s)	203
BssT1I	CCWWGG	2 cut(s)	566, 708
Bst2BI	CACGAG	1 cut(s)	203
Bst2UI	CCWGG	3 cut(s)	484, 773, 845
Bst6I	CTCTTC	1 cut(s)	792
BstACI	GRCGYC	1 cut(s)	387
BstAUI	TGTACA	1 cut(s)	603
BstBAI	YACGTR	1 cut(s)	361
BstC8I	GCNNGC	4 cut(s)	241, 254, 489, 679
BstDEI	CTNAG	5 cut(s)	59, 65, 633, 767, 969
BstDSI	CCRYGG	1 cut(s)	566
BstF5I	GGATG	2 cut(s)	760, 1117
BstH2I	RGCGCY	1 cut(s)	878
BstHHI	GCGC	1 cut(s)	877
BstKTI	GATC	4 cut(s)	49, 562, 718, 1087
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	4 cut(s)	46, 559, 715, 1084
BstMWI	GCNNNNNNNGC	4 cut(s)	249, 683, 692, 970
BstNI	CCWGG	3 cut(s)	484, 773, 845
BstSCI	CCNGG	4 cut(s)	42, 482, 771, 843
BstSFI	CTRYAG	1 cut(s)	177
BstV2I	GAAGAC	3 cut(s)	198, 663, 1128
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuI	GTATCC	1 cut(s)	450
BsuRI	GGCC	6 cut(s)	38, 228, 365, 571, 742, 1028
BtgI	CCRYGG	1 cut(s)	566
BtsCI	GGATG	2 cut(s)	760, 1117
BtsI	GCAGTG	1 cut(s)	688
BtsIMutI	CAGTG	2 cut(s)	73, 688
Cac8I	GCNNGC	4 cut(s)	241, 254, 489, 679
CfoI	GCGC	1 cut(s)	877
Cfr13I	GGNCC	3 cut(s)	37, 950, 1026
CseI	GACGC	1 cut(s)	376
CsiI	ACCWGGT	1 cut(s)	843
Csp6I	GTAC	6 cut(s)	358, 505, 531, 604, 705, 891
CviAII	CATG	8 cut(s)	187, 249, 463, 567, 836, 917, 976, 1081
CviQI	GTAC	6 cut(s)	358, 505, 531, 604, 705, 891
DdeI	CTNAG	5 cut(s)	59, 65, 633, 767, 969
DpnI	GATC	4 cut(s)	48, 561, 717, 1086
DpnII	GATC	4 cut(s)	46, 559, 715, 1084
DraI	TTTAAA	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	569
Eam1104I	CTCTTC	1 cut(s)	792
EarI	CTCTTC	1 cut(s)	792
EciI	GGCGGA	1 cut(s)	39
Ecl136II	GAGCTC	2 cut(s)	511, 695
Eco130I	CCWWGG	2 cut(s)	566, 708
Eco24I	GRGCYC	2 cut(s)	513, 697
Eco47I	GGWCC	1 cut(s)	950
Eco53kI	GAGCTC	2 cut(s)	511, 695
Eco57I	CTGAAG	2 cut(s)	134, 885
EcoICRI	GAGCTC	2 cut(s)	511, 695
EcoO109I	RGGNCCY	1 cut(s)	950
EcoRII	CCWGG	3 cut(s)	482, 771, 843
EcoT14I	CCWWGG	2 cut(s)	566, 708
EcoT38I	GRGCYC	2 cut(s)	513, 697
ErhI	CCWWGG	2 cut(s)	566, 708
FaeI	CATG	8 cut(s)	190, 252, 466, 570, 839, 920, 979, 1084
FaqI	GGGAC	3 cut(s)	108, 431, 890
FatI	CATG	8 cut(s)	186, 248, 462, 566, 835, 916, 975, 1080
FauI	CCCGC	1 cut(s)	880
FblI	GTMKAC	1 cut(s)	261
FokI	GGATG	2 cut(s)	767, 1124
FriOI	GRGCYC	2 cut(s)	513, 697
FspBI	CTAG	2 cut(s)	14, 702
GlaI	GCGC	1 cut(s)	876
HaeII	RGCGCY	1 cut(s)	878
HaeIII	GGCC	6 cut(s)	38, 228, 365, 571, 742, 1028
HapII	CCGG	1 cut(s)	44
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	1 cut(s)	877
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	8 cut(s)	190, 252, 466, 570, 839, 920, 979, 1084
Hin6I	GCGC	1 cut(s)	875
HinP1I	GCGC	1 cut(s)	875
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HinfI	GANTC	4 cut(s)	10, 63, 323, 347
HpaI	GTTAAC	1 cut(s)	478
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	2 cut(s)	220, 365
Hpy166II	GTNNAC	3 cut(s)	262, 478, 604
Hpy188I	TCNGA	6 cut(s)	62, 328, 559, 720, 768, 942
Hpy188III	TCNNGA	3 cut(s)	14, 592, 881
Hpy8I	GTNNAC	3 cut(s)	262, 478, 604
HpyAV	CCTTC	5 cut(s)	255, 373, 936, 963, 1017
HpyCH4IV	ACGT	3 cut(s)	121, 360, 1104
HpyCH4V	TGCA	7 cut(s)	105, 179, 186, 497, 758, 920, 1058
HpyF10VI	GCNNNNNNNGC	4 cut(s)	249, 683, 692, 970
HpyF3I	CTNAG	5 cut(s)	59, 65, 633, 767, 969
HpySE526I	ACGT	3 cut(s)	121, 360, 1104
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	8 cut(s)	190, 252, 466, 570, 839, 920, 979, 1084
HspAI	GCGC	1 cut(s)	875
KspAI	GTTAAC	1 cut(s)	478
Kzo9I	GATC	4 cut(s)	46, 559, 715, 1084
LmnI	GCTCC	2 cut(s)	692, 943
LweI	GCATC	3 cut(s)	484, 745, 874
MabI	ACCWGGT	1 cut(s)	843
MaeI	CTAG	2 cut(s)	14, 702
MaeII	ACGT	3 cut(s)	121, 360, 1104
MaeIII	GTNAC	1 cut(s)	1072
MalI	GATC	4 cut(s)	48, 561, 717, 1086
MboI	GATC	4 cut(s)	46, 559, 715, 1084
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	2 cut(s)	513, 697
MlsI	TGGCCA	1 cut(s)	571
MluCI	AATT	7 cut(s)	99, 275, 296, 333, 434, 582, 810
MluNI	TGGCCA	1 cut(s)	571
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	6 cut(s)	204, 239, 281, 640, 1000, 1102
Mox20I	TGGCCA	1 cut(s)	571
MscI	TGGCCA	1 cut(s)	571
MseI	TTAA	3 cut(s)	294, 477, 1017
MslI	CAYNNNNRTG	1 cut(s)	1079
Msp20I	TGGCCA	1 cut(s)	571
MspA1I	CMGCKG	1 cut(s)	1051
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	4 cut(s)	44, 484, 773, 845
Mva1269I	GAATGC	1 cut(s)	472
MvaI	CCWGG	3 cut(s)	484, 773, 845
MwoI	GCNNNNNNNGC	4 cut(s)	249, 683, 692, 970
NciI	CCSGG	1 cut(s)	44
NcoI	CCATGG	1 cut(s)	566
NdeII	GATC	4 cut(s)	46, 559, 715, 1084
NlaIII	CATG	8 cut(s)	190, 252, 466, 570, 839, 920, 979, 1084
NlaIV	GGNNCC	1 cut(s)	48
NmeAIII	GCCGAG	1 cut(s)	670
NmuCI	GTSAC	1 cut(s)	1072
PctI	GAATGC	1 cut(s)	472
PfeI	GAWTC	3 cut(s)	10, 323, 347
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
Ppu21I	YACGTR	1 cut(s)	361
PpuMI	RGGWCCY	1 cut(s)	950
Psp124BI	GAGCTC	2 cut(s)	513, 697
Psp5II	RGGWCCY	1 cut(s)	950
Psp6I	CCWGG	3 cut(s)	482, 771, 843
PspGI	CCWGG	3 cut(s)	482, 771, 843
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	3 cut(s)	37, 950, 1026
PspPPI	RGGWCCY	1 cut(s)	950
PsrI	GAACNNNNNNTAC	4 cut(s)	514, 538, 546, 570
PstI	CTGCAG	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	46
PvuII	CAGCTG	1 cut(s)	1051
RsaI	GTAC	6 cut(s)	359, 506, 532, 605, 706, 892
RsaNI	GTAC	6 cut(s)	358, 505, 531, 604, 705, 891
RseI	CAYNNNNRTG	1 cut(s)	1079
SacI	GAGCTC	2 cut(s)	513, 697
SaqAI	TTAA	3 cut(s)	294, 477, 1017
Sau3AI	GATC	4 cut(s)	46, 559, 715, 1084
Sau96I	GGNCC	3 cut(s)	37, 950, 1026
SchI	GAGTC	1 cut(s)	57
ScrFI	CCNGG	4 cut(s)	44, 484, 773, 845
SduI	GDGCHC	2 cut(s)	513, 697
SexAI	ACCWGGT	1 cut(s)	843
SfaNI	GCATC	3 cut(s)	484, 745, 874
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	950
SmiMI	CAYNNNNRTG	1 cut(s)	1079
Sse9I	AATT	7 cut(s)	99, 275, 296, 333, 434, 582, 810
SsiI	CCGC	3 cut(s)	50, 162, 887
SspMI	CTAG	2 cut(s)	14, 702
SstI	GAGCTC	2 cut(s)	513, 697
StyD4I	CCNGG	4 cut(s)	42, 482, 771, 843
StyI	CCWWGG	2 cut(s)	566, 708
TaiI	ACGT	3 cut(s)	124, 363, 1107
TaqII	GACCGA	1 cut(s)	33
TasI	AATT	7 cut(s)	99, 275, 296, 333, 434, 582, 810
TatI	WGTACW	1 cut(s)	603
TfiI	GAWTC	3 cut(s)	10, 323, 347
Tru1I	TTAA	3 cut(s)	294, 477, 1017
Tru9I	TTAA	3 cut(s)	294, 477, 1017
TscAI	CASTG	2 cut(s)	73, 688
TseFI	GTSAC	1 cut(s)	1072
Tsp45I	GTSAC	1 cut(s)	1072
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	2 cut(s)	73, 688
VpaK11BI	GGWCC	1 cut(s)	950
XapI	RAATTY	4 cut(s)	275, 333, 434, 582
XbaI	TCTAGA	1 cut(s)	13
XcmI	CCANNNNNNNNNTGG	2 cut(s)	140, 469
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	2 cut(s)	14, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.