Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003603

Physical Location & Seq

Genomic Coordinates Forward (+)

10218321 .. 10221980

Gene Structure 3660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17106

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAAGACTACTCTCTCTTGGTGAGGAAGCCCTGTTTCGGCCTCCCTACTGCTTGCCCTTCATGCTTGCCTGTCTACTTCTTCCTCAAATTCGCCGACGTTCCCTTTAAGTTGGACTATAATCTTACCTACCCTGATTCTGGCTTGCTGATGCAATCAGGTATGACCTCTGGGTGGGAACTGATGGTACCTCGATCGGCCCAAAGTATATATTGCTCTGATCTTCCATGGCCAATAGGAAAAATTTTGTTCTTGAAGCAAGTGTACAATGTAAAGCAGCAACTTGGGATTACTAAGGACAATGCCGAGGAAATAGAAGAACAGATATACAAGAAAGCCAGCATTGCATTTGGAGCTCTGTCTAGTAGATTGGTGGATCAGATGTTTTTATATGAAAAGAGGCCATCAAGTTTGGATGATGTCTTTCTGAGCCAGGCACTTATCACTCTTCAAGCATTACCAGAAACATCAATTCTCCGGAGCAAGCTCTTAGAATATGAGAACCTGGTTGGGTATGCCAGTAGGATAATGGAGCTTTTTGATGCGGGTACTTCATCTTCAGTCCCAGGCTTCCATGCATACCCTTCATCATCAGCTCTGAGAAGAGATCCTTCAAACTTGCGTTCTAAGCCGAAGCCCAAAACCAAAAGGGAAAAAACAAAGGAGGAAGTACTTAAAAGAAGGGCCAGATATGTTTTTATAGCACTACTGGTTTCGATCGTACTTTTTGTCACTCATGGATCAATCAGATGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009536 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_6 GST_N_4

Protein Analysis

252

Amino Acids

28.61

Weight (kDa)

9.31

Isoelectric Point (pI)

59.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_C_6	PF17171	115 - 176	5e-10	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19080 AT2G19080
fragaria_vesca	FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590
malus_domestica	MD13G1245600.v1.1
prunus_persica	Prupe.1G079200_v2.0.a1
pyrus_communis	pycom13g21680 pycom16g21400
rosa_chinensis	RchiOBHm_Chr4g0400191 RchiOBHm_Chr7g0191431 RchiOBHm_Chr7g0191541
rosa_laevigata	RLG00000004440 RLG00000009205
rosa_multiflora	Rmu_co8142490.1_g000001 Rmu_sc0000037.1_g000022 Rmu_sc0002661.1_g000008 Rmu_sc0003634.1_g000010 Rmu_sc0010599.1_g000007
rosa_roxburghii	Rroxscaffold_5G00345140
rosa_rugosa	Rorug04G0023500 Rorug04G0023600 Rorug04G0023700
rosa_samantha	Rh4AG098800 Rh4BG097100 Rh4CG108300 Rh4DG093800 Rh7AG119100 Rh7CG124100 Rh7DG122200
rosa_wichuraiana	Rw4G008210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	187
AccB1I	GGYRCC	1 cut(s)	187
AccI	GTMKAC	1 cut(s)	75
AccIII	TCCGGA	1 cut(s)	477
AciI	CCGC	1 cut(s)	545
AclWI	GGATC	3 cut(s)	384, 602, 748
AcoI	YGGCCR	1 cut(s)	230
AcsI	RAATTY	2 cut(s)	89, 243
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	5 cut(s)	189, 266, 550, 672, 723
AfiI	CCNNNNNNNGG	3 cut(s)	38, 140, 174
AgsI	TTSAA	3 cut(s)	256, 452, 615
AjnI	CCWGG	3 cut(s)	432, 504, 565
AluBI	AGCT	4 cut(s)	356, 487, 535, 596
AluI	AGCT	4 cut(s)	356, 487, 535, 596
Alw21I	GWGCWC	1 cut(s)	358
AlwI	GGATC	3 cut(s)	384, 602, 748
Aor13HI	TCCGGA	1 cut(s)	477
AoxI	GGCC	5 cut(s)	40, 198, 230, 401, 684
ApeKI	GCWGC	1 cut(s)	277
ApoI	RAATTY	2 cut(s)	89, 243
Asp718I	GGTACC	1 cut(s)	187
AspS9I	GGNCC	2 cut(s)	199, 684
AsuHPI	GGTGA	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	358
BarI	GAAGNNNNNNTAC	4 cut(s)	248, 280, 541, 573
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	3 cut(s)	178, 412, 744
BciT130I	CCWGG	3 cut(s)	434, 506, 567
BfaI	CTAG	1 cut(s)	363
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
BmcAI	AGTACT	1 cut(s)	672
Bme1390I	CCNGG	3 cut(s)	434, 506, 567
BmgT120I	GGNCC	2 cut(s)	199, 684
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	3 cut(s)	434, 506, 567
BmsI	GCATC	2 cut(s)	141, 532
BsaJI	CCNNGG	3 cut(s)	227, 306, 565
BsaWI	WCCGGW	1 cut(s)	477
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 140, 174
Bse1I	ACTGG	2 cut(s)	519, 714
Bse3DI	GCAATG	1 cut(s)	342
BseAI	TCCGGA	1 cut(s)	477
BseBI	CCWGG	3 cut(s)	434, 506, 567
BseDI	CCNNGG	3 cut(s)	227, 306, 565
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	3 cut(s)	38, 140, 174
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	419, 590
BseNI	ACTGG	2 cut(s)	519, 714
BseXI	GCAGC	1 cut(s)	289
Bsh1285I	CGRYCG	2 cut(s)	197, 720
BshFI	GGCC	5 cut(s)	42, 200, 232, 403, 686
BshNI	GGYRCC	1 cut(s)	187
BsiEI	CGRYCG	2 cut(s)	197, 720
BsiHKAI	GWGCWC	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	478
BslFI	GGGAC	1 cut(s)	548
BslI	CCNNNNNNNGG	3 cut(s)	38, 140, 174
BsmFI	GGGAC	1 cut(s)	548
BsnI	GGCC	5 cut(s)	42, 200, 232, 403, 686
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp13I	TCCGGA	1 cut(s)	477
Bsp1407I	TGTACA	1 cut(s)	264
Bsp143I	GATC	6 cut(s)	194, 220, 376, 607, 717, 740
Bsp19I	CCATGG	1 cut(s)	227
BspACI	CCGC	1 cut(s)	545
BspANI	GGCC	5 cut(s)	42, 200, 232, 403, 686
BspCNI	CTCAG	2 cut(s)	420, 591
BspEI	TCCGGA	1 cut(s)	477
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	3 cut(s)	384, 602, 748
BspT107I	GGYRCC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	342
BsrGI	TGTACA	1 cut(s)	264
BsrI	ACTGG	2 cut(s)	519, 714
BssECI	CCNNGG	3 cut(s)	227, 306, 565
BssMI	GATC	6 cut(s)	194, 220, 376, 607, 717, 740
BssT1I	CCWWGG	1 cut(s)	227
Bst2UI	CCWGG	3 cut(s)	434, 506, 567
Bst6I	CTCTTC	2 cut(s)	453, 598
BstAUI	TGTACA	1 cut(s)	264
BstC8I	GCNNGC	5 cut(s)	55, 68, 146, 340, 485
BstDEI	CTNAG	5 cut(s)	294, 428, 490, 599, 627
BstDSI	CCRYGG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	421
BstKTI	GATC	6 cut(s)	197, 223, 379, 610, 720, 743
BstMBI	GATC	6 cut(s)	194, 220, 376, 607, 717, 740
BstMCI	CGRYCG	2 cut(s)	197, 720
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 344, 353, 628
BstNI	CCWGG	3 cut(s)	434, 506, 567
BstSCI	CCNGG	3 cut(s)	432, 504, 565
BstV1I	GCAGC	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
BsuRI	GGCC	5 cut(s)	42, 200, 232, 403, 686
BtgI	CCRYGG	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	421
Cac8I	GCNNGC	5 cut(s)	55, 68, 146, 340, 485
Cfr13I	GGNCC	2 cut(s)	199, 684
CsiI	ACCWGGT	1 cut(s)	504
Csp6I	GTAC	5 cut(s)	188, 265, 549, 671, 722
CviAII	CATG	4 cut(s)	63, 228, 575, 737
CviQI	GTAC	5 cut(s)	188, 265, 549, 671, 722
DdeI	CTNAG	5 cut(s)	294, 428, 490, 599, 627
DpnI	GATC	6 cut(s)	196, 222, 378, 609, 719, 742
DpnII	GATC	6 cut(s)	194, 220, 376, 607, 717, 740
EaeI	YGGCCR	1 cut(s)	230
Eam1104I	CTCTTC	2 cut(s)	453, 598
EarI	CTCTTC	2 cut(s)	453, 598
Ecl136II	GAGCTC	1 cut(s)	356
Eco130I	CCWWGG	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	358
Eco53kI	GAGCTC	1 cut(s)	356
Eco57I	CTGAAG	1 cut(s)	543
EcoICRI	GAGCTC	1 cut(s)	356
EcoRII	CCWGG	3 cut(s)	432, 504, 565
EcoT14I	CCWWGG	1 cut(s)	227
EcoT22I	ATGCAT	1 cut(s)	580
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	4 cut(s)	66, 231, 578, 740
FalI	AAGNNNNNCTT	2 cut(s)	595, 627
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	4 cut(s)	62, 227, 574, 736
FauI	CCCGC	1 cut(s)	538
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	1 cut(s)	278
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	1 cut(s)	278
FspBI	CTAG	1 cut(s)	363
GluI	GCNGC	1 cut(s)	278
HaeIII	GGCC	5 cut(s)	42, 200, 232, 403, 686
HapII	CCGG	1 cut(s)	478
Hin1II	CATG	4 cut(s)	66, 231, 578, 740
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	1 cut(s)	478
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	76, 265
Hpy188I	TCNGA	5 cut(s)	220, 381, 429, 600, 749
Hpy188III	TCNNGA	2 cut(s)	253, 478
Hpy8I	GTNNAC	2 cut(s)	76, 265
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	4 cut(s)	69, 594, 621, 675
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	3 cut(s)	154, 347, 578
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 344, 353, 628
HpyF3I	CTNAG	5 cut(s)	294, 428, 490, 599, 627
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	4 cut(s)	66, 231, 578, 740
Kpn2I	TCCGGA	1 cut(s)	477
KpnI	GGTACC	1 cut(s)	191
Kzo9I	GATC	6 cut(s)	194, 220, 376, 607, 717, 740
LmnI	GCTCC	3 cut(s)	353, 480, 532
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	2 cut(s)	141, 532
MabI	ACCWGGT	1 cut(s)	504
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	730
MalI	GATC	6 cut(s)	196, 222, 378, 609, 719, 742
MboI	GATC	6 cut(s)	194, 220, 376, 607, 717, 740
MboII	GAAGA	6 cut(s)	73, 215, 329, 440, 549, 615
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	1 cut(s)	358
MlsI	TGGCCA	1 cut(s)	232
MluCI	AATT	3 cut(s)	89, 243, 471
MluNI	TGGCCA	1 cut(s)	232
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	8 cut(s)	18, 53, 95, 178, 201, 301, 393, 658
Mox20I	TGGCCA	1 cut(s)	232
Mph1103I	ATGCAT	1 cut(s)	580
MroI	TCCGGA	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	232
MseI	TTAA	2 cut(s)	108, 675
Msp20I	TGGCCA	1 cut(s)	232
MspI	CCGG	1 cut(s)	478
MspR9I	CCNGG	3 cut(s)	434, 506, 567
MvaI	CCWGG	3 cut(s)	434, 506, 567
MwoI	GCNNNNNNNGC	4 cut(s)	63, 344, 353, 628
NcoI	CCATGG	1 cut(s)	227
NdeII	GATC	6 cut(s)	194, 220, 376, 607, 717, 740
NlaIII	CATG	4 cut(s)	66, 231, 578, 740
NlaIV	GGNNCC	1 cut(s)	189
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	1 cut(s)	730
NsiI	ATGCAT	1 cut(s)	580
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	279
Ple19I	CGATCG	2 cut(s)	197, 720
Psp124BI	GAGCTC	1 cut(s)	358
Psp6I	CCWGG	3 cut(s)	432, 504, 565
PspGI	CCWGG	3 cut(s)	432, 504, 565
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	2 cut(s)	199, 684
PsrI	GAACNNNNNNTAC	2 cut(s)	171, 203
PsuI	RGATCY	1 cut(s)	607
PvuI	CGATCG	2 cut(s)	197, 720
RsaI	GTAC	5 cut(s)	189, 266, 550, 672, 723
RsaNI	GTAC	5 cut(s)	188, 265, 549, 671, 722
SacI	GAGCTC	1 cut(s)	358
SaqAI	TTAA	2 cut(s)	108, 675
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	6 cut(s)	194, 220, 376, 607, 717, 740
Sau96I	GGNCC	2 cut(s)	199, 684
ScaI	AGTACT	1 cut(s)	672
ScrFI	CCNGG	3 cut(s)	434, 506, 567
SduI	GDGCHC	1 cut(s)	358
SexAI	ACCWGGT	1 cut(s)	504
SfaNI	GCATC	2 cut(s)	141, 532
Sse9I	AATT	3 cut(s)	89, 243, 471
SsiI	CCGC	1 cut(s)	545
SspMI	CTAG	1 cut(s)	363
SstI	GAGCTC	1 cut(s)	358
StyD4I	CCNGG	3 cut(s)	432, 504, 565
StyI	CCWWGG	1 cut(s)	227
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	2 cut(s)	193, 716
TasI	AATT	3 cut(s)	89, 243, 471
TatI	WGTACW	2 cut(s)	264, 670
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	108, 675
Tru9I	TTAA	2 cut(s)	108, 675
TseFI	GTSAC	1 cut(s)	730
TseI	GCWGC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	730
TspDTI	ATGAA	5 cut(s)	17, 51, 408, 543, 576
XapI	RAATTY	2 cut(s)	89, 243
XcmI	CCANNNNNNNNNTGG	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	75
XspI	CTAG	1 cut(s)	363
ZrmI	AGTACT	1 cut(s)	672
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.