Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010599.1

Orthogroup ID

OG0003603

Physical Location & Seq

Genomic Coordinates Reverse (-)

35780 .. 36909

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010599.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atgaagaagaatctagaccgacccgtgttcattgtggcccacccggatccgccccaactcagactcagtgttcattgtgttcattttagcaccaagccaatttgcaagaccctgaagaaacgtccccattcccactttgcttctggctctgtgttcgcttccgcaaaatcggtttctgcagtctgcatggaagactactctctcgtggtgaggaagccctgtttcggcctccctactgcttgcccttcatgcttgcctgtctacttctacctcaaattcgctgacattccctttaaattggactataatcttacctaccctgattctgataaaattccgtatgttgaatctggtgagtacgtggcctataataatgagaagggtggcgtcattgagacactaaaacaagatggcattgttgatttggacaccgaatttcattcagtcccggagtggatatccatgaatgctatggttaactcctggcttgctgatgcaatcaagtacgagctctgggtgggaactgatggtacatctgcccaaagtatatattgttctgatcttccatggccaataggaaaaattttgttcttgaagcaagtgtacaatgtaaagaagcaacttgggattactaaggacaatgccgaggaaatggaagaccaggtccattatttccactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009536 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_6 GST_N_4

Protein Analysis

226

Amino Acids

25.61

Weight (kDa)

6.23

Isoelectric Point (pI)

33.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19080 AT2G19080
fragaria_vesca	FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590
malus_domestica	MD13G1245600.v1.1
prunus_persica	Prupe.1G079200_v2.0.a1
pyrus_communis	pycom13g21680 pycom16g21400
rosa_chinensis	RchiOBHm_Chr4g0400191 RchiOBHm_Chr7g0191431 RchiOBHm_Chr7g0191541
rosa_laevigata	RLG00000004440 RLG00000009205
rosa_multiflora	Rmu_co8142490.1_g000001 Rmu_sc0000037.1_g000022 Rmu_sc0002661.1_g000008 Rmu_sc0003634.1_g000010 Rmu_sc0010599.1_g000007
rosa_roxburghii	Rroxscaffold_5G00345140
rosa_rugosa	Rorug04G0023500 Rorug04G0023600 Rorug04G0023700
rosa_samantha	Rh4AG098800 Rh4BG097100 Rh4CG108300 Rh4DG093800 Rh7AG119100 Rh7CG124100 Rh7DG122200
rosa_wichuraiana	Rw4G008210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	261
AciI	CCGC	2 cut(s)	50, 162
AclWI	GGATC	2 cut(s)	41, 54
AcoI	YGGCCR	1 cut(s)	569
AcsI	RAATTY	4 cut(s)	275, 333, 434, 582
AcuI	CTGAAG	1 cut(s)	134
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	4 cut(s)	359, 506, 532, 605
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgsI	TTSAA	2 cut(s)	347, 595
AjnI	CCWGG	2 cut(s)	482, 660
AluBI	AGCT	1 cut(s)	511
AluI	AGCT	1 cut(s)	511
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	2 cut(s)	41, 54
AoxI	GGCC	4 cut(s)	36, 226, 363, 569
ApoI	RAATTY	4 cut(s)	275, 333, 434, 582
AspS9I	GGNCC	2 cut(s)	37, 664
AsuC2I	CCSGG	2 cut(s)	44, 449
AsuHPI	GGTGA	2 cut(s)	220, 365
AvaII	GGWCC	1 cut(s)	664
BalI	TGGCCA	1 cut(s)	571
BamHI	GGATCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	513
BarI	GAAGNNNNNNTAC	2 cut(s)	587, 619
BauI	CACGAG	1 cut(s)	203
BbsI	GAAGAC	2 cut(s)	198, 663
Bbv12I	GWGCWC	1 cut(s)	513
BccI	CCATC	2 cut(s)	404, 521
BciT130I	CCWGG	2 cut(s)	484, 662
BcnI	CCSGG	2 cut(s)	44, 449
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	177
Bme1390I	CCNGG	4 cut(s)	44, 449, 484, 662
Bme18I	GGWCC	1 cut(s)	664
BmgT120I	GGNCC	2 cut(s)	37, 664
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	4 cut(s)	44, 449, 484, 662
BmsI	GCATC	1 cut(s)	484
BpiI	GAAGAC	2 cut(s)	198, 663
BpuMI	CCSGG	2 cut(s)	44, 449
BsaAI	YACGTR	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	387
BsaJI	CCNNGG	2 cut(s)	566, 645
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
BseBI	CCWGG	2 cut(s)	484, 662
BseDI	CCNNGG	2 cut(s)	566, 645
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMII	CTCAG	2 cut(s)	73, 79
BshFI	GGCC	4 cut(s)	38, 228, 365, 571
BsiHKAI	GWGCWC	1 cut(s)	513
BsiSI	CCGG	2 cut(s)	44, 449
BslFI	GGGAC	2 cut(s)	108, 431
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	389
BsmFI	GGGAC	2 cut(s)	108, 431
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	4 cut(s)	38, 228, 365, 571
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	2 cut(s)	46, 559
Bsp19I	CCATGG	1 cut(s)	566
BspACI	CCGC	2 cut(s)	50, 162
BspANI	GGCC	4 cut(s)	38, 228, 365, 571
BspCNI	CTCAG	2 cut(s)	72, 78
BspLI	GGNNCC	1 cut(s)	48
BspMAI	CTGCAG	1 cut(s)	181
BspPI	GGATC	2 cut(s)	41, 54
BsrGI	TGTACA	1 cut(s)	603
BssECI	CCNNGG	2 cut(s)	566, 645
BssMI	GATC	2 cut(s)	46, 559
BssNI	GRCGYC	1 cut(s)	387
BssSI	CACGAG	1 cut(s)	203
BssT1I	CCWWGG	1 cut(s)	566
Bst2BI	CACGAG	1 cut(s)	203
Bst2UI	CCWGG	2 cut(s)	484, 662
BstACI	GRCGYC	1 cut(s)	387
BstAUI	TGTACA	1 cut(s)	603
BstBAI	YACGTR	1 cut(s)	361
BstC8I	GCNNGC	3 cut(s)	241, 254, 489
BstDEI	CTNAG	3 cut(s)	59, 65, 633
BstDSI	CCRYGG	1 cut(s)	566
BstKTI	GATC	2 cut(s)	49, 562
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	2 cut(s)	46, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	249
BstNI	CCWGG	2 cut(s)	484, 662
BstSCI	CCNGG	4 cut(s)	42, 447, 482, 660
BstSFI	CTRYAG	1 cut(s)	177
BstV2I	GAAGAC	2 cut(s)	198, 663
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	4 cut(s)	38, 228, 365, 571
BtgI	CCRYGG	1 cut(s)	566
BtsIMutI	CAGTG	2 cut(s)	73, 676
Cac8I	GCNNGC	3 cut(s)	241, 254, 489
Cfr13I	GGNCC	2 cut(s)	37, 664
CseI	GACGC	1 cut(s)	376
CsiI	ACCWGGT	1 cut(s)	660
Csp6I	GTAC	4 cut(s)	358, 505, 531, 604
CviAII	CATG	4 cut(s)	187, 249, 463, 567
CviJI	RGCY	9 cut(s)	38, 97, 147, 217, 228, 365, 487, 511, 571
CviKI_1	RGCY	9 cut(s)	38, 97, 147, 217, 228, 365, 487, 511, 571
CviQI	GTAC	4 cut(s)	358, 505, 531, 604
DdeI	CTNAG	3 cut(s)	59, 65, 633
DpnI	GATC	2 cut(s)	48, 561
DpnII	GATC	2 cut(s)	46, 559
DraI	TTTAAA	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	569
EciI	GGCGGA	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	511
Eco130I	CCWWGG	1 cut(s)	566
Eco24I	GRGCYC	1 cut(s)	513
Eco32I	GATATC	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	664
Eco53kI	GAGCTC	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	511
EcoRII	CCWGG	2 cut(s)	482, 660
EcoRV	GATATC	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	566
EcoT38I	GRGCYC	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	566
FaeI	CATG	4 cut(s)	190, 252, 466, 570
FaqI	GGGAC	2 cut(s)	108, 431
FatI	CATG	4 cut(s)	186, 248, 462, 566
FblI	GTMKAC	1 cut(s)	261
FriOI	GRGCYC	1 cut(s)	513
FspBI	CTAG	1 cut(s)	14
HaeIII	GGCC	4 cut(s)	38, 228, 365, 571
HapII	CCGG	2 cut(s)	44, 449
HgaI	GACGC	1 cut(s)	376
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	4 cut(s)	190, 252, 466, 570
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HinfI	GANTC	4 cut(s)	10, 63, 323, 347
HpaI	GTTAAC	1 cut(s)	478
HpaII	CCGG	2 cut(s)	44, 449
HphI	GGTGA	2 cut(s)	220, 365
Hpy166II	GTNNAC	3 cut(s)	262, 478, 604
Hpy188I	TCNGA	3 cut(s)	62, 328, 559
Hpy188III	TCNNGA	2 cut(s)	14, 592
Hpy8I	GTNNAC	3 cut(s)	262, 478, 604
HpyAV	CCTTC	2 cut(s)	255, 373
HpyCH4IV	ACGT	2 cut(s)	121, 360
HpyCH4V	TGCA	4 cut(s)	105, 179, 186, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	249
HpyF3I	CTNAG	3 cut(s)	59, 65, 633
HpySE526I	ACGT	2 cut(s)	121, 360
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	4 cut(s)	190, 252, 466, 570
KspAI	GTTAAC	1 cut(s)	478
Kzo9I	GATC	2 cut(s)	46, 559
LweI	GCATC	1 cut(s)	484
MabI	ACCWGGT	1 cut(s)	660
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	2 cut(s)	121, 360
MalI	GATC	2 cut(s)	48, 561
MboI	GATC	2 cut(s)	46, 559
MboII	GAAGA	6 cut(s)	16, 19, 127, 203, 554, 668
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	513
MlsI	TGGCCA	1 cut(s)	571
MluCI	AATT	6 cut(s)	99, 275, 296, 333, 434, 582
MluNI	TGGCCA	1 cut(s)	571
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	4 cut(s)	204, 239, 281, 640
Mox20I	TGGCCA	1 cut(s)	571
MscI	TGGCCA	1 cut(s)	571
MseI	TTAA	2 cut(s)	294, 477
Msp20I	TGGCCA	1 cut(s)	571
MspI	CCGG	2 cut(s)	44, 449
MspR9I	CCNGG	4 cut(s)	44, 449, 484, 662
Mva1269I	GAATGC	1 cut(s)	472
MvaI	CCWGG	2 cut(s)	484, 662
MwoI	GCNNNNNNNGC	1 cut(s)	249
NciI	CCSGG	2 cut(s)	44, 449
NcoI	CCATGG	1 cut(s)	566
NdeII	GATC	2 cut(s)	46, 559
NlaIII	CATG	4 cut(s)	190, 252, 466, 570
NlaIV	GGNNCC	1 cut(s)	48
NmeAIII	GCCGAG	1 cut(s)	670
PctI	GAATGC	1 cut(s)	472
PfeI	GAWTC	3 cut(s)	10, 323, 347
PflFI	GACNNNGTC	1 cut(s)	662
PfoI	TCCNGGA	1 cut(s)	447
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
Ppu21I	YACGTR	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	513
Psp6I	CCWGG	2 cut(s)	482, 660
PspGI	CCWGG	2 cut(s)	482, 660
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	2 cut(s)	37, 664
PsrI	GAACNNNNNNTAC	4 cut(s)	514, 538, 546, 570
PstI	CTGCAG	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	46
PsyI	GACNNNGTC	1 cut(s)	662
RsaI	GTAC	4 cut(s)	359, 506, 532, 605
RsaNI	GTAC	4 cut(s)	358, 505, 531, 604
SacI	GAGCTC	1 cut(s)	513
SaqAI	TTAA	2 cut(s)	294, 477
Sau3AI	GATC	2 cut(s)	46, 559
Sau96I	GGNCC	2 cut(s)	37, 664
SchI	GAGTC	1 cut(s)	57
ScrFI	CCNGG	4 cut(s)	44, 449, 484, 662
SduI	GDGCHC	1 cut(s)	513
SetI	ASST	6 cut(s)	124, 273, 317, 363, 513, 666
SexAI	ACCWGGT	1 cut(s)	660
SfaNI	GCATC	1 cut(s)	484
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	664
Sse9I	AATT	6 cut(s)	99, 275, 296, 333, 434, 582
SsiI	CCGC	2 cut(s)	50, 162
SspMI	CTAG	1 cut(s)	14
SstI	GAGCTC	1 cut(s)	513
StyD4I	CCNGG	4 cut(s)	42, 447, 482, 660
StyI	CCWWGG	1 cut(s)	566
TaiI	ACGT	2 cut(s)	124, 363
TaqII	GACCGA	1 cut(s)	33
TasI	AATT	6 cut(s)	99, 275, 296, 333, 434, 582
TatI	WGTACW	1 cut(s)	603
TfiI	GAWTC	3 cut(s)	10, 323, 347
Tru1I	TTAA	2 cut(s)	294, 477
Tru9I	TTAA	2 cut(s)	294, 477
TscAI	CASTG	1 cut(s)	73
TspDTI	ATGAA	7 cut(s)	17, 19, 62, 71, 237, 428, 479
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	1 cut(s)	73
Tth111I	GACNNNGTC	1 cut(s)	662
VpaK11BI	GGWCC	1 cut(s)	664
XapI	RAATTY	4 cut(s)	275, 333, 434, 582
XbaI	TCTAGA	1 cut(s)	13
XcmI	CCANNNNNNNNNTGG	2 cut(s)	140, 469
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.