Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003603

Physical Location & Seq

Genomic Coordinates Reverse (-)

9616395 .. 9620736

Gene Structure 4342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG124100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGCTACCACTAGACCAACCTCATTGTGTTCCCTCCGAATATCCTTTGCCAAAAAGAAAAATGAAAAAAAGAAGAAGAAGAATCCAGACCGACCCGTGTTCATTGTGGCCCACCCGGATCCGCCCCAACTCAGACTCAGTGACCCATTTTAGCACCAAGCCAATTTGCAAGACCCTGAAGAAACCTCCCCATTCCCACTTTGCTTCTGGCTCTGTGTTCGCTTCCGCAAAATCGGTTTCTGCAGTCTGCATGGAAGACTACTCTCTCGTGGTGAGGAAGACCTGTTTCGGCCTCCCTACTGCTTGCCCTTCATGCTTGCCTGTCTACTTCTACCTCAAATTCGCTGACATTCCCTTTAAATTGGACTATAATCTTACCTTCCCTGATTCTGATAAAATTCCGTATGTTGAATCTGGTGAGTACGTGGCCTATAATAATGAGAAGGGTGGCGTCATTGAGACACTAAAAGAAGATGGCATTGTTGATTTGGACACCGAATTTCATTCAGTCCCGGAGTGGATACCCATGAATGCTATGGTTAACTCCTGGCTTTCTGATGCAATCAAGTACGAGCTCTGGGTGGGAACTGATGGTACATCTGCCCAAAGTATATATTGTTCTGATCTTCCATGGCCAATAGGAAAAATTTTGTTCTTGAAGCAAGTGTACAATGTAAAGAAGCAACTTGGGATTACTAAGGACAATGCCGAGGAAATGGAAGACCAGATATATAAGAGAGCCAGCAGTGCGTTTGGAGCTCTGTCTAGTACCTTGGTGGATCAGATGTTTTTATATGGAAACAGGCCATCAAGTTTGGATGCAGTCTTTCTGAGCCAGGCACTTATCACTCTTCAAGCATTACCAGTAAGTCAAAGTTCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009536 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_6 GST_N_4

Protein Analysis

294

Amino Acids

33.03

Weight (kDa)

7.51

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_4	PF17172	103 - 196	1.1e-18	Glutathione S-transferase N-terminal domain
GST_C_6	PF17171	247 - 287	8.6e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19080 AT2G19080
fragaria_vesca	FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590 FvH4_4g07590
malus_domestica	MD13G1245600.v1.1
prunus_persica	Prupe.1G079200_v2.0.a1
pyrus_communis	pycom13g21680 pycom16g21400
rosa_chinensis	RchiOBHm_Chr4g0400191 RchiOBHm_Chr7g0191431 RchiOBHm_Chr7g0191541
rosa_laevigata	RLG00000004440 RLG00000009205
rosa_multiflora	Rmu_co8142490.1_g000001 Rmu_sc0000037.1_g000022 Rmu_sc0002661.1_g000008 Rmu_sc0003634.1_g000010 Rmu_sc0010599.1_g000007
rosa_roxburghii	Rroxscaffold_5G00345140
rosa_rugosa	Rorug04G0023500 Rorug04G0023600 Rorug04G0023700
rosa_samantha	Rh4AG098800 Rh4BG097100 Rh4CG108300 Rh4DG093800 Rh7AG119100 Rh7CG124100 Rh7DG122200
rosa_wichuraiana	Rw4G008210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	324
AciI	CCGC	2 cut(s)	121, 225
AclWI	GGATC	3 cut(s)	112, 125, 786
AcoI	YGGCCR	1 cut(s)	632
AcsI	RAATTY	4 cut(s)	338, 396, 497, 645
AcuI	CTGAAG	1 cut(s)	197
AcyI	GRCGYC	1 cut(s)	450
AfaI	GTAC	5 cut(s)	422, 569, 595, 668, 769
AgsI	TTSAA	3 cut(s)	410, 658, 854
AjnI	CCWGG	2 cut(s)	545, 834
AluBI	AGCT	2 cut(s)	574, 758
AluI	AGCT	2 cut(s)	574, 758
Alw21I	GWGCWC	2 cut(s)	576, 760
Alw26I	GTCTC	1 cut(s)	452
AlwI	GGATC	3 cut(s)	112, 125, 786
AoxI	GGCC	5 cut(s)	107, 289, 426, 632, 803
ApoI	RAATTY	4 cut(s)	338, 396, 497, 645
AspS9I	GGNCC	1 cut(s)	108
AsuC2I	CCSGG	2 cut(s)	115, 512
AsuHPI	GGTGA	2 cut(s)	283, 428
BalI	TGGCCA	1 cut(s)	634
BamHI	GGATCC	1 cut(s)	117
BanII	GRGCYC	2 cut(s)	576, 760
BarI	GAAGNNNNNNTAC	2 cut(s)	650, 682
BauI	CACGAG	1 cut(s)	266
BbsI	GAAGAC	3 cut(s)	261, 284, 726
Bbv12I	GWGCWC	2 cut(s)	576, 760
BccI	CCATC	3 cut(s)	467, 584, 814
BciT130I	CCWGG	2 cut(s)	547, 836
BciVI	GTATCC	1 cut(s)	513
BcnI	CCSGG	2 cut(s)	115, 512
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	2 cut(s)	11, 765
BfmI	CTRYAG	1 cut(s)	240
BfuI	GTATCC	1 cut(s)	513
Bme1390I	CCNGG	4 cut(s)	115, 512, 547, 836
BmgT120I	GGNCC	1 cut(s)	108
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	4 cut(s)	115, 512, 547, 836
BmsI	GCATC	2 cut(s)	547, 808
BpiI	GAAGAC	3 cut(s)	261, 284, 726
BpuMI	CCSGG	2 cut(s)	115, 512
BsaAI	YACGTR	1 cut(s)	424
BsaHI	GRCGYC	1 cut(s)	450
BsaJI	CCNNGG	3 cut(s)	629, 708, 771
Bse1I	ACTGG	1 cut(s)	863
BseBI	CCWGG	2 cut(s)	547, 836
BseDI	CCNNGG	3 cut(s)	629, 708, 771
BseGI	GGATG	1 cut(s)	823
BseMII	CTCAG	3 cut(s)	144, 150, 821
BseNI	ACTGG	1 cut(s)	863
BshFI	GGCC	5 cut(s)	109, 291, 428, 634, 805
BsiHKAI	GWGCWC	2 cut(s)	576, 760
BsiSI	CCGG	2 cut(s)	115, 512
BslFI	GGGAC	1 cut(s)	494
BsmAI	GTCTC	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	494
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	5 cut(s)	109, 291, 428, 634, 805
Bsp1286I	GDGCHC	2 cut(s)	576, 760
Bsp1407I	TGTACA	1 cut(s)	666
Bsp143I	GATC	3 cut(s)	117, 622, 778
Bsp19I	CCATGG	1 cut(s)	629
BspACI	CCGC	2 cut(s)	121, 225
BspANI	GGCC	5 cut(s)	109, 291, 428, 634, 805
BspCNI	CTCAG	3 cut(s)	143, 149, 822
BspLI	GGNNCC	1 cut(s)	119
BspMAI	CTGCAG	1 cut(s)	244
BspPI	GGATC	3 cut(s)	112, 125, 786
BsrGI	TGTACA	1 cut(s)	666
BsrI	ACTGG	1 cut(s)	863
BssECI	CCNNGG	3 cut(s)	629, 708, 771
BssMI	GATC	3 cut(s)	117, 622, 778
BssNI	GRCGYC	1 cut(s)	450
BssSI	CACGAG	1 cut(s)	266
BssT1I	CCWWGG	2 cut(s)	629, 771
Bst2BI	CACGAG	1 cut(s)	266
Bst2UI	CCWGG	2 cut(s)	547, 836
Bst6I	CTCTTC	1 cut(s)	855
BstACI	GRCGYC	1 cut(s)	450
BstAUI	TGTACA	1 cut(s)	666
BstBAI	YACGTR	1 cut(s)	424
BstC8I	GCNNGC	3 cut(s)	304, 317, 742
BstDEI	CTNAG	4 cut(s)	130, 136, 696, 830
BstDSI	CCRYGG	1 cut(s)	629
BstF5I	GGATG	1 cut(s)	823
BstKTI	GATC	3 cut(s)	120, 625, 781
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	3 cut(s)	117, 622, 778
BstMWI	GCNNNNNNNGC	3 cut(s)	312, 746, 755
BstNI	CCWGG	2 cut(s)	547, 836
BstSCI	CCNGG	4 cut(s)	113, 510, 545, 834
BstSFI	CTRYAG	1 cut(s)	240
BstV2I	GAAGAC	3 cut(s)	261, 284, 726
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	513
BsuRI	GGCC	5 cut(s)	109, 291, 428, 634, 805
BtgI	CCRYGG	1 cut(s)	629
BtsCI	GGATG	1 cut(s)	823
BtsI	GCAGTG	1 cut(s)	751
BtsIMutI	CAGTG	2 cut(s)	144, 751
Cac8I	GCNNGC	3 cut(s)	304, 317, 742
Cfr13I	GGNCC	1 cut(s)	108
CseI	GACGC	1 cut(s)	439
Csp6I	GTAC	5 cut(s)	421, 568, 594, 667, 768
CviAII	CATG	5 cut(s)	250, 312, 526, 630, 879
CviQI	GTAC	5 cut(s)	421, 568, 594, 667, 768
DdeI	CTNAG	4 cut(s)	130, 136, 696, 830
DpnI	GATC	3 cut(s)	119, 624, 780
DpnII	GATC	3 cut(s)	117, 622, 778
DraI	TTTAAA	1 cut(s)	358
EaeI	YGGCCR	1 cut(s)	632
Eam1104I	CTCTTC	1 cut(s)	855
EarI	CTCTTC	1 cut(s)	855
EciI	GGCGGA	1 cut(s)	110
Ecl136II	GAGCTC	2 cut(s)	574, 758
Eco130I	CCWWGG	2 cut(s)	629, 771
Eco24I	GRGCYC	2 cut(s)	576, 760
Eco53kI	GAGCTC	2 cut(s)	574, 758
Eco57I	CTGAAG	1 cut(s)	197
EcoICRI	GAGCTC	2 cut(s)	574, 758
EcoRII	CCWGG	2 cut(s)	545, 834
EcoT14I	CCWWGG	2 cut(s)	629, 771
EcoT38I	GRGCYC	2 cut(s)	576, 760
ErhI	CCWWGG	2 cut(s)	629, 771
FaeI	CATG	5 cut(s)	253, 315, 529, 633, 882
FaqI	GGGAC	1 cut(s)	494
FatI	CATG	5 cut(s)	249, 311, 525, 629, 878
FblI	GTMKAC	1 cut(s)	324
FokI	GGATG	1 cut(s)	830
FriOI	GRGCYC	2 cut(s)	576, 760
FspBI	CTAG	2 cut(s)	11, 765
HaeIII	GGCC	5 cut(s)	109, 291, 428, 634, 805
HapII	CCGG	2 cut(s)	115, 512
HgaI	GACGC	1 cut(s)	439
Hin1I	GRCGYC	1 cut(s)	450
Hin1II	CATG	5 cut(s)	253, 315, 529, 633, 882
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HinfI	GANTC	4 cut(s)	81, 134, 386, 410
HpaI	GTTAAC	1 cut(s)	541
HpaII	CCGG	2 cut(s)	115, 512
HphI	GGTGA	2 cut(s)	283, 428
Hpy166II	GTNNAC	3 cut(s)	325, 541, 667
Hpy188I	TCNGA	7 cut(s)	37, 133, 391, 556, 622, 783, 831
Hpy188III	TCNNGA	2 cut(s)	85, 655
Hpy8I	GTNNAC	3 cut(s)	325, 541, 667
HpyAV	CCTTC	3 cut(s)	318, 388, 436
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	5 cut(s)	168, 242, 249, 560, 821
HpyF10VI	GCNNNNNNNGC	3 cut(s)	312, 746, 755
HpyF3I	CTNAG	4 cut(s)	130, 136, 696, 830
HpySE526I	ACGT	1 cut(s)	423
Hsp92I	GRCGYC	1 cut(s)	450
Hsp92II	CATG	5 cut(s)	253, 315, 529, 633, 882
KspAI	GTTAAC	1 cut(s)	541
Kzo9I	GATC	3 cut(s)	117, 622, 778
LmnI	GCTCC	1 cut(s)	755
LweI	GCATC	2 cut(s)	547, 808
MaeI	CTAG	2 cut(s)	11, 765
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	3 cut(s)	119, 624, 780
MboI	GATC	3 cut(s)	117, 622, 778
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	2 cut(s)	576, 760
MlsI	TGGCCA	1 cut(s)	634
MluCI	AATT	6 cut(s)	162, 338, 359, 396, 497, 645
MluNI	TGGCCA	1 cut(s)	634
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	7 cut(s)	30, 43, 195, 267, 302, 344, 703
Mox20I	TGGCCA	1 cut(s)	634
MscI	TGGCCA	1 cut(s)	634
MseI	TTAA	2 cut(s)	357, 540
Msp20I	TGGCCA	1 cut(s)	634
MspI	CCGG	2 cut(s)	115, 512
MspR9I	CCNGG	4 cut(s)	115, 512, 547, 836
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	2 cut(s)	547, 836
MwoI	GCNNNNNNNGC	3 cut(s)	312, 746, 755
NciI	CCSGG	2 cut(s)	115, 512
NcoI	CCATGG	1 cut(s)	629
NdeII	GATC	3 cut(s)	117, 622, 778
NlaIII	CATG	5 cut(s)	253, 315, 529, 633, 882
NlaIV	GGNNCC	1 cut(s)	119
NmeAIII	GCCGAG	1 cut(s)	733
NmuCI	GTSAC	1 cut(s)	139
PctI	GAATGC	1 cut(s)	535
PfeI	GAWTC	3 cut(s)	81, 386, 410
PfoI	TCCNGGA	1 cut(s)	510
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
Ppu21I	YACGTR	1 cut(s)	424
Psp124BI	GAGCTC	2 cut(s)	576, 760
Psp6I	CCWGG	2 cut(s)	545, 834
PspGI	CCWGG	2 cut(s)	545, 834
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	1 cut(s)	108
PsrI	GAACNNNNNNTAC	4 cut(s)	577, 601, 609, 633
PstI	CTGCAG	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	117
RsaI	GTAC	5 cut(s)	422, 569, 595, 668, 769
RsaNI	GTAC	5 cut(s)	421, 568, 594, 667, 768
SacI	GAGCTC	2 cut(s)	576, 760
SaqAI	TTAA	2 cut(s)	357, 540
Sau3AI	GATC	3 cut(s)	117, 622, 778
Sau96I	GGNCC	1 cut(s)	108
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	4 cut(s)	115, 512, 547, 836
SduI	GDGCHC	2 cut(s)	576, 760
SetI	ASST	9 cut(s)	22, 187, 284, 336, 380, 426, 576, 760, 773
SfaNI	GCATC	2 cut(s)	547, 808
SfcI	CTRYAG	1 cut(s)	240
Sse9I	AATT	6 cut(s)	162, 338, 359, 396, 497, 645
SsiI	CCGC	2 cut(s)	121, 225
SspMI	CTAG	2 cut(s)	11, 765
SstI	GAGCTC	2 cut(s)	576, 760
StyD4I	CCNGG	4 cut(s)	113, 510, 545, 834
StyI	CCWWGG	2 cut(s)	629, 771
TaiI	ACGT	1 cut(s)	426
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	6 cut(s)	162, 338, 359, 396, 497, 645
TatI	WGTACW	1 cut(s)	666
TfiI	GAWTC	3 cut(s)	81, 386, 410
Tru1I	TTAA	2 cut(s)	357, 540
Tru9I	TTAA	2 cut(s)	357, 540
TscAI	CASTG	2 cut(s)	144, 751
TseFI	GTSAC	1 cut(s)	139
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	6 cut(s)	77, 90, 300, 491, 542, 867
TspGWI	ACGGA	1 cut(s)	390
TspRI	CASTG	2 cut(s)	144, 751
XapI	RAATTY	4 cut(s)	338, 396, 497, 645
XcmI	CCANNNNNNNNNTGG	2 cut(s)	203, 532
XmiI	GTMKAC	1 cut(s)	324
XspI	CTAG	2 cut(s)	11, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.