FvH4_4g11620

Phosphoenolpyruvate phosphomutase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
15313611 .. 15319807
6197 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11620.t2

Sequence Viewer

Length: 1479 bp
ATGAGTTGTGTGCTGCATCCTCAGGTGGGTAGCAGAGAGTGCAGTGCCTCTCTTCCCCACAGTTCCTGCTCTTTCAATCTCAGCTCACCTTCAAATCTTACATTTGGCTCACATCTTCATCAACGTTCACTTTCACTTCCCCACAAGTCAAATGCGTCTCCTCGTATTCTTACCAGAAGGATCAGCGCAGCTTACTCAGGAGACTCAGCTCCACCGGAGTCTCCGGCGAAAGCGCTGCGCCGGATTCTGGAGTTGCCAGGGGTGCACCAAGGCCCTGCTTGCTTTGATGGTCTCAGTGCCAAGCTTGTGGAAAGGGCTGGCTTCCAGTATTGCTTCACTAGTGGATTTTCAATATCGGCTGCTAGATTAGGGCTGCCAGATACAGGTTTTCTATCCTATGGAGAAATGGTGGATCAGGGGCAACAAATTACTCAATCTGTGTCGATTCCTGTCATTGGGGATGGCGATAATGGTTATGGGAATGCCATGAATGTCAAGAGAACTATCAAGGGATATATTCGAGCTGGCTTTGCTGGGATTCTGCTTGAAGATCAGGTGTCTCCAAAAGCCTGCGGTCATACGCAAGGCAGGAAAGTAGTGTCAAGGGAGGAAGCTGTGATGAGGATAAAAGCAGCAGTTGATGCTCGGAAAGAGAGTGGATCGGACATTGTAATTGTAGCACGAACTGATTCTCGTCAAGCAGTGTCTTTGGAAGAATCACTCTGGAGGTCAAGGGCATTTGCTGATGCTGGAGCAGATGTTCTTTTCATTGATGCACTAGCCTCTAAAGAAGAAATGAAGGCTTTCTGTGGAGTATATCCCTTAGTTCCAAAAATGGCGAATATGCTTGAAGGAGGGGGGAAAACACCGATACTCACTCCGCTTGAGCTTGAGGAAATCGGATACAAACTTGTGGCTTATCCACTTTCCTTGATTGGGGTATCTATTCAAGCAATGCAGGATGCACTGGCTGCGATCAAAGGAGGTCGTATCCCTCCACCTGGAAGCATGCCATCTTTCGAAGAGGTTAAGGAGGTCCTAGGTTTCAACAGTTATTATGAAGAAGAAAAGCGGTATTATAGCAACAGCAGTCAGCTGTCTTCTGAAAGATCAGCCAGTAGTTTATACAGTCTTCAAGGGACAGCTAAAAATGCAGAACCAAAAGATCAGAGTTCTCAAGATCCCATTGTTGAAGTCATAACTCCTGAAGTGTACAATGGTGCAGATGGTTTCAAGGATTCATTTTCTGCGATCTGGTCTCGGAAGTTGAGAATCAGAATAACTGGAAGAGATGGATTTGAGAAACTTGATGTTAAGATTCCTGCTGGATTCTTGGACGGAATCACAAATATAGTTCCAGCTCTTGGGGGTGTAAACATCAAAGAATTGTTGAATGAGGCAGCTGATGAAATGGGAGGGAAGCAGCTGTTAGATTTTAACGACACAATGGGTGATAGAATTCAAGTTTTTCTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

493

Amino Acids

53.06

Weight (kDa)

5.93

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEP_mutase PF13714 92 - 326 2.3e-45 Phosphoenolpyruvate phosphomutase
ICL PF00463 149 - 237 1.9e-13 Isocitrate lyase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1364
AciI CCGC 3 cut(s) 573, 881, 1072
AclI AACGTT 1 cut(s) 124
AclWI GGATC 4 cut(s) 188, 420, 667, 1175
AcsI RAATTY 1 cut(s) 1458
AcuI CTGAAG 1 cut(s) 1227
AfaI GTAC 1 cut(s) 1214
AfeI AGCGCT 1 cut(s) 234
AfiI CCNNNNNNNGG 7 cut(s) 26, 247, 383, 455, 936, 1001, 1364
AhlI ACTAGT 1 cut(s) 338
AjnI CCWGG 2 cut(s) 256, 1000
AloI GAACNNNNNNTCC 2 cut(s) 744, 776
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 6 cut(s) 162, 195, 225, 296, 564, 1263
Alw44I GTGCAC 1 cut(s) 263
AlwI GGATC 4 cut(s) 188, 420, 667, 1175
AlwNI CAGNNNCTG 1 cut(s) 66
Aor51HI AGCGCT 1 cut(s) 234
AoxI GGCC 1 cut(s) 271
ApaLI GTGCAC 1 cut(s) 263
ApeKI GCWGC 9 cut(s) 13, 188, 235, 359, 373, 632, 971, 1400, 1423
ApoI RAATTY 1 cut(s) 1458
Asp700I GAANNNNTTC 2 cut(s) 688, 803
AspA2I CCTAGG 1 cut(s) 1039
AspLEI GCGC 3 cut(s) 188, 235, 240
AspS9I GGNCC 2 cut(s) 272, 1036
AsuHPI GGTGA 2 cut(s) 78, 1463
AsuII TTCGAA 1 cut(s) 1020
AvaII GGWCC 1 cut(s) 1036
AvrII CCTAGG 1 cut(s) 1039
AxyI CCTNAGG 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 267
BbsI GAAGAC 2 cut(s) 1092, 1124
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 8 cut(s) 200, 222, 346, 360, 644, 958, 1412, 1435
BccI CCATC 5 cut(s) 281, 455, 1021, 1220, 1286
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BciT130I CCWGG 2 cut(s) 258, 1002
BciVI GTATCC 2 cut(s) 896, 1001
BcoDI GTCTC 6 cut(s) 162, 195, 225, 296, 564, 1263
BcuI ACTAGT 1 cut(s) 338
BfaI CTAG 4 cut(s) 339, 363, 779, 1040
BfoI RGCGCY 1 cut(s) 236
BfuI GTATCC 2 cut(s) 896, 1001
BisI GCNGC 9 cut(s) 14, 189, 236, 360, 374, 633, 972, 1401, 1424
BlnI CCTAGG 1 cut(s) 1039
BlsI GCNGC 9 cut(s) 15, 190, 237, 361, 375, 634, 973, 1402, 1425
Bme1390I CCNGG 2 cut(s) 258, 1002
Bme18I GGWCC 1 cut(s) 1036
BmgT120I GGNCC 2 cut(s) 272, 1036
BmrFI CCNGG 2 cut(s) 258, 1002
BmsI GCATC 5 cut(s) 25, 631, 736, 763, 952
BpiI GAAGAC 2 cut(s) 1092, 1124
BpmI CTGGAG 3 cut(s) 269, 745, 771
Bpu14I TTCGAA 1 cut(s) 1020
BpuEI CTTGAG 3 cut(s) 905, 911, 1161
BsaI GGTCTC 2 cut(s) 296, 1263
BsaJI CCNNGG 3 cut(s) 257, 268, 1039
BsaWI WCCGGW 1 cut(s) 214
BsaXI ACNNNNNCTCC 4 cut(s) 393, 423, 744, 774
Bsc4I CCNNNNNNNGG 7 cut(s) 26, 247, 383, 455, 936, 1001, 1364
Bse1I ACTGG 4 cut(s) 325, 972, 1116, 1288
Bse21I CCTNAGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 960
BseBI CCWGG 2 cut(s) 258, 1002
BseDI CCNNGG 3 cut(s) 257, 268, 1039
BseGI GGATG 3 cut(s) 16, 466, 967
BseLI CCNNNNNNNGG 7 cut(s) 26, 247, 383, 455, 936, 1001, 1364
BseMI GCAATG 1 cut(s) 960
BseMII CTCAG 5 cut(s) 35, 94, 210, 219, 307
BseNI ACTGG 4 cut(s) 325, 972, 1116, 1288
BseRI GAGGAG 1 cut(s) 150
BseSI GKGCMC 1 cut(s) 267
BseXI GCAGC 8 cut(s) 200, 222, 346, 360, 644, 958, 1412, 1435
BseYI CCCAGC 1 cut(s) 533
BsgI GTGCAG 2 cut(s) 61, 1242
BshFI GGCC 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 267
BsiSI CCGG 3 cut(s) 215, 224, 241
BslFI GGGAC 1 cut(s) 1153
BslI CCNNNNNNNGG 7 cut(s) 26, 247, 383, 455, 936, 1001, 1364
BsmAI GTCTC 6 cut(s) 162, 195, 225, 296, 564, 1263
BsmBI CGTCTC 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 1153
BsmI GAATGC 1 cut(s) 487
BsnI GGCC 1 cut(s) 273
Bso31I GGTCTC 2 cut(s) 296, 1263
Bsp119I TTCGAA 1 cut(s) 1020
Bsp1286I GDGCHC 1 cut(s) 267
Bsp1407I TGTACA 1 cut(s) 1212
Bsp143I GATC 9 cut(s) 180, 412, 550, 659, 975, 1109, 1165, 1180, 1251
BspACI CCGC 3 cut(s) 573, 881, 1072
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 5 cut(s) 34, 93, 209, 218, 306
BspPI GGATC 4 cut(s) 188, 420, 667, 1175
BspT104I TTCGAA 1 cut(s) 1020
BspTNI GGTCTC 2 cut(s) 296, 1263
BsrDI GCAATG 1 cut(s) 960
BsrGI TGTACA 1 cut(s) 1212
BsrI ACTGG 4 cut(s) 325, 972, 1116, 1288
BssECI CCNNGG 3 cut(s) 257, 268, 1039
BssMI GATC 9 cut(s) 180, 412, 550, 659, 975, 1109, 1165, 1180, 1251
BssT1I CCWWGG 2 cut(s) 268, 1039
Bst2UI CCWGG 2 cut(s) 258, 1002
Bst4CI ACNGT 3 cut(s) 62, 1052, 1130
Bst6I CTCTTC 3 cut(s) 57, 1017, 1282
BstAPI GCANNNNNTGC 3 cut(s) 39, 641, 971
BstAUI TGTACA 1 cut(s) 1212
BstBI TTCGAA 1 cut(s) 1020
BstC8I GCNNGC 5 cut(s) 280, 319, 526, 571, 1010
BstDEI CTNAG 6 cut(s) 21, 80, 196, 205, 293, 823
BstF5I GGATG 3 cut(s) 16, 466, 967
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 3 cut(s) 188, 235, 240
BstKTI GATC 9 cut(s) 183, 415, 553, 662, 978, 1112, 1168, 1183, 1254
BstMAI GTCTC 6 cut(s) 162, 195, 225, 296, 564, 1263
BstMBI GATC 9 cut(s) 180, 412, 550, 659, 975, 1109, 1165, 1180, 1251
BstMWI GCNNNNNNNGC 7 cut(s) 39, 262, 279, 530, 641, 971, 1151
BstNI CCWGG 2 cut(s) 258, 1002
BstNSI RCATGY 1 cut(s) 1012
BstSCI CCNGG 2 cut(s) 256, 1000
BstSLI GKGCMC 1 cut(s) 267
BstV1I GCAGC 8 cut(s) 200, 222, 346, 360, 644, 958, 1412, 1435
BstV2I GAAGAC 2 cut(s) 1092, 1124
BstX2I RGATCY 1 cut(s) 1180
BstXI CCANNNNNNTGG 1 cut(s) 307
BstYI RGATCY 1 cut(s) 1180
Bsu36I CCTNAGG 1 cut(s) 21
BsuI GTATCC 2 cut(s) 896, 1001
BsuRI GGCC 1 cut(s) 273
BtsCI GGATG 3 cut(s) 16, 466, 967
BtsI GCAGTG 2 cut(s) 49, 708
BtsIMutI CAGTG 4 cut(s) 49, 301, 708, 965
Cac8I GCNNGC 5 cut(s) 280, 319, 526, 571, 1010
CaiI CAGNNNCTG 1 cut(s) 66
CfoI GCGC 3 cut(s) 188, 235, 240
Cfr13I GGNCC 2 cut(s) 272, 1036
CseI GACGC 1 cut(s) 144
Csp6I GTAC 1 cut(s) 1213
CspCI CAANNNNNGTGG 2 cut(s) 912, 947
CviAII CATG 2 cut(s) 487, 1009
CviQI GTAC 1 cut(s) 1213
DdeI CTNAG 6 cut(s) 21, 80, 196, 205, 293, 823
DpnI GATC 9 cut(s) 182, 414, 552, 661, 977, 1111, 1167, 1182, 1253
DpnII GATC 9 cut(s) 180, 412, 550, 659, 975, 1109, 1165, 1180, 1251
Eam1104I CTCTTC 3 cut(s) 57, 1017, 1282
EarI CTCTTC 3 cut(s) 57, 1017, 1282
Eco130I CCWWGG 2 cut(s) 268, 1039
Eco31I GGTCTC 2 cut(s) 296, 1263
Eco47I GGWCC 1 cut(s) 1036
Eco47III AGCGCT 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 1227
Eco81I CCTNAGG 1 cut(s) 21
EcoO109I RGGNCCY 2 cut(s) 272, 1036
EcoRI GAATTC 1 cut(s) 1458
EcoRII CCWGG 2 cut(s) 256, 1000
EcoT14I CCWWGG 2 cut(s) 268, 1039
ErhI CCWWGG 2 cut(s) 268, 1039
Esp3I CGTCTC 1 cut(s) 162
FaeI CATG 2 cut(s) 490, 1012
FaqI GGGAC 1 cut(s) 1153
FatI CATG 2 cut(s) 486, 1008
Fnu4HI GCNGC 9 cut(s) 14, 189, 236, 360, 374, 633, 972, 1401, 1424
FokI GGATG 3 cut(s) 3, 473, 974
Fsp4HI GCNGC 9 cut(s) 14, 189, 236, 360, 374, 633, 972, 1401, 1424
FspBI CTAG 4 cut(s) 339, 363, 779, 1040
GlaI GCGC 3 cut(s) 187, 234, 239
GluI GCNGC 9 cut(s) 14, 189, 236, 360, 374, 633, 972, 1401, 1424
GsaI CCCAGC 1 cut(s) 537
GsuI CTGGAG 3 cut(s) 269, 745, 771
HaeII RGCGCY 1 cut(s) 236
HaeIII GGCC 1 cut(s) 273
HapII CCGG 3 cut(s) 215, 224, 241
HgaI GACGC 1 cut(s) 144
HhaI GCGC 3 cut(s) 188, 235, 240
Hin1II CATG 2 cut(s) 490, 1012
Hin6I GCGC 3 cut(s) 186, 233, 238
HinP1I GCGC 3 cut(s) 186, 233, 238
HindIII AAGCTT 1 cut(s) 302
HpaII CCGG 3 cut(s) 215, 224, 241
HphI GGTGA 2 cut(s) 78, 1463
Hpy166II GTNNAC 4 cut(s) 128, 265, 1213, 1375
Hpy188I TCNGA 7 cut(s) 648, 664, 902, 1105, 1170, 1263, 1277
Hpy188III TCNNGA 7 cut(s) 198, 248, 496, 724, 1178, 1205, 1472
Hpy8I GTNNAC 4 cut(s) 128, 265, 1213, 1375
HpyAV CCTTC 4 cut(s) 99, 171, 793, 845
HpyCH4III ACNGT 3 cut(s) 62, 1052, 1130
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 8 cut(s) 16, 42, 265, 776, 958, 965, 1154, 1223
HpyF10VI GCNNNNNNNGC 7 cut(s) 39, 262, 279, 530, 641, 971, 1151
HpyF3I CTNAG 6 cut(s) 21, 80, 196, 205, 293, 823
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 2 cut(s) 490, 1012
HspAI GCGC 3 cut(s) 186, 233, 238
Kzo9I GATC 9 cut(s) 180, 412, 550, 659, 975, 1109, 1165, 1180, 1251
LmnI GCTCC 2 cut(s) 214, 752
Lsp1109I GCAGC 8 cut(s) 200, 222, 346, 360, 644, 958, 1412, 1435
LweI GCATC 5 cut(s) 25, 631, 736, 763, 952
MaeI CTAG 4 cut(s) 339, 363, 779, 1040
MaeII ACGT 1 cut(s) 124
MalI GATC 9 cut(s) 182, 414, 552, 661, 977, 1111, 1167, 1182, 1253
MboI GATC 9 cut(s) 180, 412, 550, 659, 975, 1109, 1165, 1180, 1251
MflI RGATCY 1 cut(s) 1180
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 4 cut(s) 426, 672, 1385, 1458
MlyI GAGTC 2 cut(s) 197, 227
MroXI GAANNNNTTC 2 cut(s) 688, 803
MseI TTAA 3 cut(s) 1029, 1314, 1437
MspA1I CMGCKG 3 cut(s) 1096, 1403, 1426
MspI CCGG 3 cut(s) 215, 224, 241
MspR9I CCNGG 2 cut(s) 258, 1002
MteI GCGCNGCGC 1 cut(s) 236
Mva1269I GAATGC 1 cut(s) 487
MvaI CCWGG 2 cut(s) 258, 1002
MwoI GCNNNNNNNGC 7 cut(s) 39, 262, 279, 530, 641, 971, 1151
NdeII GATC 9 cut(s) 180, 412, 550, 659, 975, 1109, 1165, 1180, 1251
NlaIII CATG 2 cut(s) 490, 1012
NspI RCATGY 1 cut(s) 1012
NspV TTCGAA 1 cut(s) 1020
PaeI GCATGC 1 cut(s) 1012
PctI GAATGC 1 cut(s) 487
PdmI GAANNNNTTC 2 cut(s) 688, 803
PflMI CCANNNNNTGG 1 cut(s) 1364
PkrI GCNGC 9 cut(s) 15, 190, 237, 361, 375, 634, 973, 1402, 1425
PleI GAGTC 2 cut(s) 197, 226
PpsI GAGTC 2 cut(s) 197, 226
PpuMI RGGWCCY 1 cut(s) 1036
Psp1406I AACGTT 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 1036
Psp6I CCWGG 2 cut(s) 256, 1000
PspFI CCCAGC 1 cut(s) 533
PspGI CCWGG 2 cut(s) 256, 1000
PspPI GGNCC 2 cut(s) 272, 1036
PspPPI RGGWCCY 1 cut(s) 1036
PstNI CAGNNNCTG 1 cut(s) 66
PsuI RGATCY 1 cut(s) 1180
PvuII CAGCTG 3 cut(s) 1096, 1403, 1426
RsaI GTAC 1 cut(s) 1214
RsaNI GTAC 1 cut(s) 1213
SaqAI TTAA 3 cut(s) 1029, 1314, 1437
SatI GCNGC 9 cut(s) 14, 189, 236, 360, 374, 633, 972, 1401, 1424
Sau3AI GATC 9 cut(s) 180, 412, 550, 659, 975, 1109, 1165, 1180, 1251
Sau96I GGNCC 2 cut(s) 272, 1036
SchI GAGTC 2 cut(s) 197, 227
ScrFI CCNGG 2 cut(s) 258, 1002
SduI GDGCHC 1 cut(s) 267
SfaNI GCATC 5 cut(s) 25, 631, 736, 763, 952
SfuI TTCGAA 1 cut(s) 1020
SinI GGWCC 1 cut(s) 1036
SmlI CTYRAG 3 cut(s) 884, 890, 1176
SmoI CTYRAG 3 cut(s) 884, 890, 1176
SpeI ACTAGT 1 cut(s) 338
SphI GCATGC 1 cut(s) 1012
Sse9I AATT 4 cut(s) 426, 672, 1385, 1458
SsiI CCGC 3 cut(s) 573, 881, 1072
SspMI CTAG 4 cut(s) 339, 363, 779, 1040
StyD4I CCNGG 2 cut(s) 256, 1000
StyI CCWWGG 2 cut(s) 268, 1039
TaaI ACNGT 3 cut(s) 62, 1052, 1130
TaiI ACGT 1 cut(s) 127
TaqI TCGA 3 cut(s) 443, 520, 1020
TasI AATT 4 cut(s) 426, 672, 1385, 1458
TatI WGTACW 1 cut(s) 1212
Tru1I TTAA 3 cut(s) 1029, 1314, 1437
Tru9I TTAA 3 cut(s) 1029, 1314, 1437
TscAI CASTG 4 cut(s) 49, 301, 708, 972
TseI GCWGC 9 cut(s) 13, 188, 235, 359, 373, 632, 971, 1400, 1423
TspDTI ATGAA 7 cut(s) 107, 503, 757, 812, 1074, 1230, 1422
TspGWI ACGGA 1 cut(s) 1353
TspRI CASTG 4 cut(s) 49, 301, 708, 972
Van91I CCANNNNNTGG 1 cut(s) 1364
VneI GTGCAC 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 1036
XapI RAATTY 1 cut(s) 1458
XceI RCATGY 1 cut(s) 1012
XmaJI CCTAGG 1 cut(s) 1039
XmnI GAANNNNTTC 2 cut(s) 688, 803
XspI CTAG 4 cut(s) 339, 363, 779, 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.