Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004495

Physical Location & Seq

Genomic Coordinates Forward (+)

26637568 .. 26641807

Gene Structure 4240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG148700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGAGTTGTGTGCTGCAGCAGCAGTATCCTCAGGTGGGTAGCAGAGAGTGCAGTGTGTCTCTTCCCCACAGCTCCTCTTTCAATGTCAGCAGCTCGCCTTCAAACCTTACATTCGGGTCACGTCTTCATCAACGATCACTAACACTGCCCCACAAGTCAAATGCGTCTCCTTTTCGTACCACAAGGATCCTCGCAGCTTACTCAGGAGACTCTGCGCCGCCGCCCGAGTCTCCGGCCAAAGCGCTTCGCCGGATTCTGGAGTTGCCGGGGGTTCACCAAGGCCCTGCTTGCTTTGATGGTCTCAGCGCCAAGCTTGTCGAAAGAGCTGGCTTCCAGTATTGCTTCACCAGTGGATTTTCAATATCAGCTGCTAGATTAGGGCTGCCAGATACAGGTTTTCTATCCTATGGAGAAATGGTGGATCAGGGGCAACAAATTACCCAAGCTGTGTCGATTCCTGTCATTGGGGATGGCGATAACGGTTACGGGAATGCAATGAATGTCAAGAGAACTGTCAAGGGATATATTAGAGCTGGCTTTGCGGGGATTCTGCTTGAAGATCAGGTGTCTCCAAAAGCCTGCGGTCATACACAAGGCAGGAAAGTGGTGTCAAGGGAGGAAGCTGTGATGCGGATAAAAGCAGCAGTTGATGCTCGGAAAGAGAGTGGCTCTGACATTGTAATTGTAGCACGATCTGATTCTCGTCAAGCAGTGTCTTTGGAAGAAGCACTTTGGAGGTCAAGGGCATTCGCTGATGCTGGAGCAGATGTTCTTTTCATTGATGCACTAGCCTCAAAAGAAGAAATGAAGGCTTTCTGTGGAGTATATCCCCTAGTTCCAAAAATGGCGAATATGCTTGAAGGAGGGGGGAAAACACCAATACTCAATCCTCTTGAACTTGAGGAAGTTGGATACAAACTTGTGGCTTATCCACTTTCCTTGATTGGGGTATCTATTCAAGCAATGCAGGATGCACTAGCTGCTATCAGAGGAGGTCGTATCCCTCCACCTGGAAGCATGCCATCTTTTGAAGAGCTTAAGGAGGTCCTAGGTTTCAACAGTTATTATGAAGAAGAAAAGCGGTATTATAGTAACAGCAGTCAGCTGTCTTCTGAAAGATTGGCCAGTAGTGTATACAGTCTTCAAGGGACATCTAAAAATGCAGAACCAAAAGATCAGTCCTCAAGATCCCATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEP_mutase

Protein Analysis

399

Amino Acids

42.97

Weight (kDa)

8.08

Isoelectric Point (pI)

56.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEP_mutase	PF13714	95 - 329	1.6e-45	Phosphoenolpyruvate phosphomutase
ICL	PF00463	152 - 239	8.5e-13	Isocitrate lyase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43180 AT2G43180 AT2G43180 AT2G43180
fragaria_vesca	FvH4_4g11620 FvH4_4g11620
malus_domestica	MD04G1031000.v1.1
prunus_persica	Prupe.1G182700_v2.0.a1 Prupe.1G182700_v2.0.a1 Prupe.1G182700_v2.0.a1
pyrus_communis	pycom04g02620
rosa_chinensis	RchiOBHm_Chr4g0408741 RchiOBHm_Chr4g0408751
rosa_laevigata	RLG00000008633 RLG00000008634
rosa_multiflora	Rmu_sc0001258.1_g000006 Rmu_sc0005878.1_g000017 Rmu_sc0007333.1_g000009
rosa_roxburghii	Rroxscaffold_5G00353090
rosa_rugosa	Rorug04G0087300
rosa_samantha	Rh1DG149900 Rh4AG151500 Rh4AG151600 Rh4BG148700 Rh4BG148800 Rh4CG159600 Rh4CG159800 Rh4DG144700 Rh4DG144800
rosa_wichuraiana	Rw0G015170 Rw4G012420 Rw4G012440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1134
AciI	CCGC	6 cut(s)	218, 221, 542, 582, 631, 1081
AclWI	GGATC	4 cut(s)	181, 194, 429, 1182
AcoI	YGGCCR	2 cut(s)	234, 1122
AfaI	GTAC	1 cut(s)	178
AfeI	AGCGCT	1 cut(s)	243
AfiI	CCNNNNNNNGG	6 cut(s)	35, 256, 392, 464, 945, 1010
AflII	CTTAAG	1 cut(s)	1037
AjiI	CACGTC	1 cut(s)	122
AjnI	CCWGG	1 cut(s)	1009
AloI	GAACNNNNNNTCC	2 cut(s)	753, 785
Alw26I	GTCTC	6 cut(s)	63, 171, 201, 234, 305, 573
AlwI	GGATC	4 cut(s)	181, 194, 429, 1182
Ama87I	CYCGRG	1 cut(s)	224
Aor51HI	AGCGCT	1 cut(s)	243
AoxI	GGCC	3 cut(s)	234, 280, 1122
ApeKI	GCWGC	9 cut(s)	13, 16, 19, 90, 194, 368, 382, 641, 980
ArsI	GACNNNNNNTTYG	2 cut(s)	1163, 1195
Asp700I	GAANNNNTTC	1 cut(s)	812
AspA2I	CCTAGG	1 cut(s)	1048
AspLEI	GCGC	3 cut(s)	217, 244, 308
AspS9I	GGNCC	2 cut(s)	281, 1045
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	2 cut(s)	266, 337
AvaI	CYCGRG	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	1045
AvrII	CCTAGG	1 cut(s)	1048
AxyI	CCTNAGG	1 cut(s)	30
BalI	TGGCCA	1 cut(s)	1124
BamHI	GGATCC	1 cut(s)	186
BarI	GAAGNNNNNNTAC	2 cut(s)	1125, 1157
BbsI	GAAGAC	3 cut(s)	116, 1101, 1133
BbvI	GCAGC	8 cut(s)	28, 31, 102, 206, 355, 369, 653, 967
BccI	CCATC	3 cut(s)	290, 464, 1030
BciT130I	CCWGG	1 cut(s)	1011
BciVI	GTATCC	3 cut(s)	36, 905, 1010
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	6 cut(s)	63, 171, 201, 234, 305, 573
BfaI	CTAG	5 cut(s)	372, 788, 833, 977, 1049
BfmI	CTRYAG	1 cut(s)	14
BfoI	RGCGCY	2 cut(s)	245, 309
BfrI	CTTAAG	1 cut(s)	1037
BfuI	GTATCC	3 cut(s)	36, 905, 1010
BlnI	CCTAGG	1 cut(s)	1048
Bme1390I	CCNGG	2 cut(s)	267, 1011
Bme18I	GGWCC	1 cut(s)	1045
BmeT110I	CYCGRG	1 cut(s)	224
BmgBI	CACGTC	1 cut(s)	122
BmgT120I	GGNCC	2 cut(s)	281, 1045
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	2 cut(s)	267, 1011
BmsI	GCATC	5 cut(s)	618, 640, 745, 772, 961
BpiI	GAAGAC	3 cut(s)	116, 1101, 1133
BplI	GAGNNNNNCTC	2 cut(s)	653, 685
BpmI	CTGGAG	2 cut(s)	278, 780
BpuEI	CTTGAG	2 cut(s)	920, 1168
BpuMI	CCSGG	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	3 cut(s)	266, 277, 1048
BsaXI	ACNNNNNCTCC	4 cut(s)	402, 432, 753, 783
Bsc4I	CCNNNNNNNGG	6 cut(s)	35, 256, 392, 464, 945, 1010
Bse1I	ACTGG	3 cut(s)	334, 348, 1125
Bse21I	CCTNAGG	1 cut(s)	30
Bse3DI	GCAATG	2 cut(s)	501, 969
BseBI	CCWGG	1 cut(s)	1011
BseDI	CCNNGG	3 cut(s)	266, 277, 1048
BseGI	GGATG	2 cut(s)	475, 976
BseLI	CCNNNNNNNGG	6 cut(s)	35, 256, 392, 464, 945, 1010
BseMI	GCAATG	2 cut(s)	501, 969
BseMII	CTCAG	3 cut(s)	44, 216, 316
BseNI	ACTGG	3 cut(s)	334, 348, 1125
BseRI	GAGGAG	2 cut(s)	64, 1005
BseXI	GCAGC	8 cut(s)	28, 31, 102, 206, 355, 369, 653, 967
BsgI	GTGCAG	1 cut(s)	70
BshFI	GGCC	3 cut(s)	236, 282, 1124
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	3 cut(s)	233, 250, 266
BslFI	GGGAC	1 cut(s)	1162
BslI	CCNNNNNNNGG	6 cut(s)	35, 256, 392, 464, 945, 1010
BsmAI	GTCTC	6 cut(s)	63, 171, 201, 234, 305, 573
BsmBI	CGTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	1162
BsmI	GAATGC	2 cut(s)	496, 746
BsnI	GGCC	3 cut(s)	236, 282, 1124
Bso31I	GGTCTC	1 cut(s)	305
BsoBI	CYCGRG	1 cut(s)	224
Bsp143I	GATC	7 cut(s)	134, 186, 421, 559, 692, 1174, 1187
BspACI	CCGC	6 cut(s)	218, 221, 542, 582, 631, 1081
BspANI	GGCC	3 cut(s)	236, 282, 1124
BspCNI	CTCAG	3 cut(s)	43, 215, 315
BspLI	GGNNCC	1 cut(s)	188
BspMAI	CTGCAG	1 cut(s)	18
BspPI	GGATC	4 cut(s)	181, 194, 429, 1182
BspQI	GCTCTTC	1 cut(s)	1026
BspTI	CTTAAG	1 cut(s)	1037
BspTNI	GGTCTC	1 cut(s)	305
BsrDI	GCAATG	2 cut(s)	501, 969
BsrI	ACTGG	3 cut(s)	334, 348, 1125
BssECI	CCNNGG	3 cut(s)	266, 277, 1048
BssMI	GATC	7 cut(s)	134, 186, 421, 559, 692, 1174, 1187
BssNAI	GTATAC	1 cut(s)	1135
BssT1I	CCWWGG	2 cut(s)	277, 1048
Bst1107I	GTATAC	1 cut(s)	1135
Bst2UI	CCWGG	1 cut(s)	1011
Bst4CI	ACNGT	4 cut(s)	482, 514, 1061, 1139
Bst6I	CTCTTC	2 cut(s)	66, 1026
BstAFI	CTTAAG	1 cut(s)	1037
BstAPI	GCANNNNNTGC	3 cut(s)	48, 650, 980
BstC8I	GCNNGC	6 cut(s)	95, 289, 328, 535, 580, 1019
BstDEI	CTNAG	3 cut(s)	30, 202, 302
BstF5I	GGATG	2 cut(s)	475, 976
BstH2I	RGCGCY	2 cut(s)	245, 309
BstHHI	GCGC	3 cut(s)	217, 244, 308
BstKTI	GATC	7 cut(s)	137, 189, 424, 562, 695, 1177, 1190
BstMAI	GTCTC	6 cut(s)	63, 171, 201, 234, 305, 573
BstMBI	GATC	7 cut(s)	134, 186, 421, 559, 692, 1174, 1187
BstMWI	GCNNNNNNNGC	6 cut(s)	19, 48, 288, 539, 650, 980
BstNI	CCWGG	1 cut(s)	1011
BstNSI	RCATGY	1 cut(s)	1021
BstSCI	CCNGG	2 cut(s)	265, 1009
BstSFI	CTRYAG	1 cut(s)	14
BstV1I	GCAGC	8 cut(s)	28, 31, 102, 206, 355, 369, 653, 967
BstV2I	GAAGAC	3 cut(s)	116, 1101, 1133
BstX2I	RGATCY	2 cut(s)	186, 1187
BstYI	RGATCY	2 cut(s)	186, 1187
BstZ17I	GTATAC	1 cut(s)	1135
Bsu36I	CCTNAGG	1 cut(s)	30
BsuI	GTATCC	3 cut(s)	36, 905, 1010
BsuRI	GGCC	3 cut(s)	236, 282, 1124
BtrI	CACGTC	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	475, 976
BtsI	GCAGTG	3 cut(s)	58, 143, 717
BtsIMutI	CAGTG	4 cut(s)	58, 143, 355, 717
Cac8I	GCNNGC	6 cut(s)	95, 289, 328, 535, 580, 1019
CfoI	GCGC	3 cut(s)	217, 244, 308
Cfr13I	GGNCC	2 cut(s)	281, 1045
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	177
CspCI	CAANNNNNGTGG	2 cut(s)	921, 956
CviAII	CATG	1 cut(s)	1018
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	3 cut(s)	30, 202, 302
DpnI	GATC	7 cut(s)	136, 188, 423, 561, 694, 1176, 1189
DpnII	GATC	7 cut(s)	134, 186, 421, 559, 692, 1174, 1187
EaeI	YGGCCR	2 cut(s)	234, 1122
Eam1104I	CTCTTC	2 cut(s)	66, 1026
EarI	CTCTTC	2 cut(s)	66, 1026
Eco130I	CCWWGG	2 cut(s)	277, 1048
Eco31I	GGTCTC	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	1045
Eco47III	AGCGCT	1 cut(s)	243
Eco81I	CCTNAGG	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	224
EcoO109I	RGGNCCY	2 cut(s)	281, 1045
EcoRII	CCWGG	1 cut(s)	1009
EcoT14I	CCWWGG	2 cut(s)	277, 1048
ErhI	CCWWGG	2 cut(s)	277, 1048
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	1 cut(s)	1021
FaiI	YATR	9 cut(s)	408, 525, 588, 826, 854, 1019, 1068, 1089, 1135
FalI	AAGNNNNNCTT	2 cut(s)	714, 746
FaqI	GGGAC	1 cut(s)	1162
FatI	CATG	1 cut(s)	1017
FauI	CCCGC	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	1134
FokI	GGATG	2 cut(s)	482, 983
FspBI	CTAG	5 cut(s)	372, 788, 833, 977, 1049
GlaI	GCGC	3 cut(s)	216, 243, 307
GsuI	CTGGAG	2 cut(s)	278, 780
HaeII	RGCGCY	2 cut(s)	245, 309
HaeIII	GGCC	3 cut(s)	236, 282, 1124
HapII	CCGG	3 cut(s)	233, 250, 266
HgaI	GACGC	1 cut(s)	153
HhaI	GCGC	3 cut(s)	217, 244, 308
Hin1II	CATG	1 cut(s)	1021
Hin6I	GCGC	3 cut(s)	215, 242, 306
HinP1I	GCGC	3 cut(s)	215, 242, 306
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	6 cut(s)	209, 227, 253, 454, 547, 698
HpaII	CCGG	3 cut(s)	233, 250, 266
HphI	GGTGA	2 cut(s)	266, 337
Hpy166II	GTNNAC	2 cut(s)	274, 1135
Hpy188I	TCNGA	5 cut(s)	657, 673, 697, 989, 1114
Hpy188III	TCNNGA	5 cut(s)	204, 257, 505, 893, 1185
Hpy8I	GTNNAC	2 cut(s)	274, 1135
HpyAV	CCTTC	3 cut(s)	108, 802, 854
HpyCH4III	ACNGT	4 cut(s)	482, 514, 1061, 1139
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	7 cut(s)	16, 51, 494, 785, 967, 974, 1163
HpyF10VI	GCNNNNNNNGC	6 cut(s)	19, 48, 288, 539, 650, 980
HpyF3I	CTNAG	3 cut(s)	30, 202, 302
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	1 cut(s)	1021
HspAI	GCGC	3 cut(s)	215, 242, 306
Kzo9I	GATC	7 cut(s)	134, 186, 421, 559, 692, 1174, 1187
LguI	GCTCTTC	1 cut(s)	1026
LmnI	GCTCC	2 cut(s)	77, 761
Lsp1109I	GCAGC	8 cut(s)	28, 31, 102, 206, 355, 369, 653, 967
LweI	GCATC	5 cut(s)	618, 640, 745, 772, 961
MaeI	CTAG	5 cut(s)	372, 788, 833, 977, 1049
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	3 cut(s)	117, 482, 1091
MalI	GATC	7 cut(s)	136, 188, 423, 561, 694, 1176, 1189
MboI	GATC	7 cut(s)	134, 186, 421, 559, 692, 1174, 1187
MflI	RGATCY	2 cut(s)	186, 1187
MlsI	TGGCCA	1 cut(s)	1124
MluCI	AATT	2 cut(s)	435, 681
MluNI	TGGCCA	1 cut(s)	1124
MlyI	GAGTC	2 cut(s)	203, 236
MmeI	TCCRAC	1 cut(s)	889
Mox20I	TGGCCA	1 cut(s)	1124
MroXI	GAANNNNTTC	1 cut(s)	812
MscI	TGGCCA	1 cut(s)	1124
MseI	TTAA	1 cut(s)	1038
Msp20I	TGGCCA	1 cut(s)	1124
MspA1I	CMGCKG	2 cut(s)	368, 1105
MspCI	CTTAAG	1 cut(s)	1037
MspI	CCGG	3 cut(s)	233, 250, 266
MspR9I	CCNGG	2 cut(s)	267, 1011
Mva1269I	GAATGC	2 cut(s)	496, 746
MvaI	CCWGG	1 cut(s)	1011
MwoI	GCNNNNNNNGC	6 cut(s)	19, 48, 288, 539, 650, 980
NciI	CCSGG	1 cut(s)	267
NdeII	GATC	7 cut(s)	134, 186, 421, 559, 692, 1174, 1187
NlaIII	CATG	1 cut(s)	1021
NlaIV	GGNNCC	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	117
NspI	RCATGY	1 cut(s)	1021
PaeI	GCATGC	1 cut(s)	1021
PciSI	GCTCTTC	1 cut(s)	1026
PctI	GAATGC	2 cut(s)	496, 746
PdmI	GAANNNNTTC	1 cut(s)	812
PfeI	GAWTC	4 cut(s)	253, 454, 547, 698
PleI	GAGTC	2 cut(s)	203, 235
PpsI	GAGTC	2 cut(s)	203, 235
PpuMI	RGGWCCY	1 cut(s)	1045
Psp5II	RGGWCCY	1 cut(s)	1045
Psp6I	CCWGG	1 cut(s)	1009
PspGI	CCWGG	1 cut(s)	1009
PspN4I	GGNNCC	1 cut(s)	188
PspPI	GGNCC	2 cut(s)	281, 1045
PspPPI	RGGWCCY	1 cut(s)	1045
PstI	CTGCAG	1 cut(s)	18
PsuI	RGATCY	2 cut(s)	186, 1187
PvuII	CAGCTG	2 cut(s)	368, 1105
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
SapI	GCTCTTC	1 cut(s)	1026
SaqAI	TTAA	1 cut(s)	1038
Sau3AI	GATC	7 cut(s)	134, 186, 421, 559, 692, 1174, 1187
Sau96I	GGNCC	2 cut(s)	281, 1045
SchI	GAGTC	2 cut(s)	203, 236
ScrFI	CCNGG	2 cut(s)	267, 1011
SfaNI	GCATC	5 cut(s)	618, 640, 745, 772, 961
SfcI	CTRYAG	1 cut(s)	14
SinI	GGWCC	1 cut(s)	1045
SmlI	CTYRAG	3 cut(s)	899, 1037, 1183
SmoI	CTYRAG	3 cut(s)	899, 1037, 1183
SphI	GCATGC	1 cut(s)	1021
Sse9I	AATT	2 cut(s)	435, 681
SsiI	CCGC	6 cut(s)	218, 221, 542, 582, 631, 1081
SspMI	CTAG	5 cut(s)	372, 788, 833, 977, 1049
StyD4I	CCNGG	2 cut(s)	265, 1009
StyI	CCWWGG	2 cut(s)	277, 1048
TaaI	ACNGT	4 cut(s)	482, 514, 1061, 1139
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	2 cut(s)	318, 452
TasI	AATT	2 cut(s)	435, 681
TauI	GCSGC	2 cut(s)	220, 223
TfiI	GAWTC	4 cut(s)	253, 454, 547, 698
Tru1I	TTAA	1 cut(s)	1038
Tru9I	TTAA	1 cut(s)	1038
TscAI	CASTG	4 cut(s)	58, 150, 355, 717
TseFI	GTSAC	1 cut(s)	117
TseI	GCWGC	9 cut(s)	13, 16, 19, 90, 194, 368, 382, 641, 980
Tsp45I	GTSAC	1 cut(s)	117
TspDTI	ATGAA	5 cut(s)	116, 512, 766, 821, 1083
TspRI	CASTG	4 cut(s)	58, 150, 355, 717
Vha464I	CTTAAG	1 cut(s)	1037
VpaK11BI	GGWCC	1 cut(s)	1045
XceI	RCATGY	1 cut(s)	1021
XmaJI	CCTAGG	1 cut(s)	1048
XmiI	GTMKAC	1 cut(s)	1134
XmnI	GAANNNNTTC	1 cut(s)	812
XspI	CTAG	5 cut(s)	372, 788, 833, 977, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.