Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004495

Physical Location & Seq

Genomic Coordinates Forward (+)

38331530 .. 38334590

Gene Structure 3061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG151600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGAAGCCCCAACAAGTCAGATGCGTCTCCTTTTCTTACCACAGGAGATTCAGCGCCGCCGCCCGAGTCTCCGGCCAAAGCGCTCCGCCGGATTCTGGAGTTGCCAGGGGTTCACCAAGGCCCTGCTTGCTTTGATGGTCTCAGCGCCAAGCTTATTGAAAGAGCTGGCTTCCAGTATTGCTTCACCAGTGGATTTTCGATATCGGCTGCTACATTAGGGCTGCCAGATACAGGTTTTCTATCCTACGGAGAAATGGTGGATCAGGGGCAACAAATTACCCAAGCTGTGTCAATTCCTGTCATTGGGGATGGCGACAACGGTTACGGGAATGCAATGAACGTCAAGAGAACTGTCAAGGGATTTATTAGAGCTGGCTTTGCTGGCATTCTGCTTGAAGATCAGGTGTCTCCAAAAGCCTGCGGTCATACACGAGGCAGGAAAGTGGTGTCAAGGGAGGAAGCTGTGATGCGGATAAAAGCAGCAGTTGATGCTCGGAAAGAGAGTGGCTCTGACATTGTAATTGTAGCACGGTCTGATGCTCGTCAAGCAGTGTCTTTGGAAGAAGCACTTTGGAGGTCAAGGGCATTCGCTGATGCTGGAGCAGATGTTCTTTTCATTGATGCACTAGCCTCAAAAGAAGAAATGAAGGCTTTCTGTGGAGTATATCCCCTAGTTCCAAAAATGGCGAATATGCTTGAAGGAGGGGGGAAAACACCAATACTCAATCCTCTTGAACTTGAGGAAGTTGGATACAAACTTGTGGTTTATCCACTTTCCTTGATTGGGGTATCTATTCAAGCAATGCAGGACGCACTAGCTGCTATCAGAGGAGGTCGTATCCCTCCACCTGGAAGCATGCCATCTTTTGAAGAGCTTAAGGAGGTCCTAGGTTTCAACAGTTATTATGAAGAAGAAAAGCGGTATTATAGTAACAGCAGTCAGCTGTCTTCTGAAAGATTGGCCAGTAGTGTATACAGTCTTGAAGGGACATCTAAAAATGCAGAACCAAAAGATCAGAGTCCTCATAAACCAAAACATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEP_mutase

Protein Analysis

348

Amino Acids

37.31

Weight (kDa)

5.94

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEP_mutase	PF13714	42 - 276	3.3e-46	Phosphoenolpyruvate phosphomutase
ICL	PF00463	99 - 186	3.4e-13	Isocitrate lyase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43180 AT2G43180 AT2G43180 AT2G43180
fragaria_vesca	FvH4_4g11620 FvH4_4g11620
malus_domestica	MD04G1031000.v1.1
prunus_persica	Prupe.1G182700_v2.0.a1 Prupe.1G182700_v2.0.a1 Prupe.1G182700_v2.0.a1
pyrus_communis	pycom04g02620
rosa_chinensis	RchiOBHm_Chr4g0408741 RchiOBHm_Chr4g0408751
rosa_laevigata	RLG00000008633 RLG00000008634
rosa_multiflora	Rmu_sc0001258.1_g000006 Rmu_sc0005878.1_g000017 Rmu_sc0007333.1_g000009
rosa_roxburghii	Rroxscaffold_5G00353090
rosa_rugosa	Rorug04G0087300
rosa_samantha	Rh1DG149900 Rh4AG151500 Rh4AG151600 Rh4BG148700 Rh4BG148800 Rh4CG159600 Rh4CG159800 Rh4DG144700 Rh4DG144800
rosa_wichuraiana	Rw0G015170 Rw4G012420 Rw4G012440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	975
AciI	CCGC	6 cut(s)	59, 62, 88, 423, 472, 922
AclWI	GGATC	1 cut(s)	270
AcoI	YGGCCR	2 cut(s)	75, 963
AfeI	AGCGCT	1 cut(s)	84
AfiI	CCNNNNNNNGG	5 cut(s)	97, 233, 305, 786, 851
AflII	CTTAAG	1 cut(s)	878
AgsI	TTSAA	8 cut(s)	161, 398, 701, 737, 800, 872, 898, 986
AjnI	CCWGG	2 cut(s)	106, 850
AloI	GAACNNNNNNTCC	2 cut(s)	594, 626
AluBI	AGCT	8 cut(s)	154, 167, 287, 374, 464, 821, 877, 946
AluI	AGCT	8 cut(s)	154, 167, 287, 374, 464, 821, 877, 946
Alw26I	GTCTC	4 cut(s)	33, 75, 146, 414
AlwI	GGATC	1 cut(s)	270
Ama87I	CYCGRG	1 cut(s)	65
Aor51HI	AGCGCT	1 cut(s)	84
AoxI	GGCC	3 cut(s)	75, 121, 963
ApeKI	GCWGC	4 cut(s)	209, 223, 482, 821
Asp700I	GAANNNNTTC	1 cut(s)	653
AspA2I	CCTAGG	1 cut(s)	889
AspLEI	GCGC	3 cut(s)	58, 85, 149
AspS9I	GGNCC	2 cut(s)	122, 886
AsuHPI	GGTGA	2 cut(s)	107, 178
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	886
AvrII	CCTAGG	1 cut(s)	889
BalI	TGGCCA	1 cut(s)	965
BauI	CACGAG	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	942
BbvI	GCAGC	4 cut(s)	196, 210, 494, 808
BccI	CCATC	3 cut(s)	131, 305, 871
BciT130I	CCWGG	2 cut(s)	108, 852
BciVI	GTATCC	2 cut(s)	746, 851
BcoDI	GTCTC	4 cut(s)	33, 75, 146, 414
BfaI	CTAG	4 cut(s)	629, 674, 818, 890
BfoI	RGCGCY	3 cut(s)	59, 86, 150
BfrI	CTTAAG	1 cut(s)	878
BfuI	GTATCC	2 cut(s)	746, 851
BisI	GCNGC	6 cut(s)	59, 62, 210, 224, 483, 822
BlnI	CCTAGG	1 cut(s)	889
BlsI	GCNGC	6 cut(s)	60, 63, 211, 225, 484, 823
Bme1390I	CCNGG	2 cut(s)	108, 852
Bme18I	GGWCC	1 cut(s)	886
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	2 cut(s)	122, 886
BmrFI	CCNGG	2 cut(s)	108, 852
BmsI	GCATC	6 cut(s)	13, 459, 481, 529, 586, 613
BpiI	GAAGAC	1 cut(s)	942
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
BpmI	CTGGAG	2 cut(s)	119, 621
BpuEI	CTTGAG	1 cut(s)	761
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	3 cut(s)	107, 118, 889
BsaXI	ACNNNNNCTCC	4 cut(s)	243, 273, 594, 624
Bsc4I	CCNNNNNNNGG	5 cut(s)	97, 233, 305, 786, 851
Bse1I	ACTGG	3 cut(s)	175, 189, 966
Bse3DI	GCAATG	2 cut(s)	342, 810
BseBI	CCWGG	2 cut(s)	108, 852
BseDI	CCNNGG	3 cut(s)	107, 118, 889
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	5 cut(s)	97, 233, 305, 786, 851
BseMI	GCAATG	2 cut(s)	342, 810
BseMII	CTCAG	1 cut(s)	157
BseNI	ACTGG	3 cut(s)	175, 189, 966
BseRI	GAGGAG	1 cut(s)	846
BseXI	GCAGC	4 cut(s)	196, 210, 494, 808
BshFI	GGCC	3 cut(s)	77, 123, 965
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	74, 91
BslFI	GGGAC	1 cut(s)	1003
BslI	CCNNNNNNNGG	5 cut(s)	97, 233, 305, 786, 851
BsmAI	GTCTC	4 cut(s)	33, 75, 146, 414
BsmBI	CGTCTC	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	1003
BsmI	GAATGC	3 cut(s)	337, 387, 587
BsnI	GGCC	3 cut(s)	77, 123, 965
Bso31I	GGTCTC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	262, 400, 1015
BspACI	CCGC	6 cut(s)	59, 62, 88, 423, 472, 922
BspANI	GGCC	3 cut(s)	77, 123, 965
BspCNI	CTCAG	1 cut(s)	156
BspPI	GGATC	1 cut(s)	270
BspQI	GCTCTTC	1 cut(s)	867
BspTI	CTTAAG	1 cut(s)	878
BspTNI	GGTCTC	1 cut(s)	146
BsrDI	GCAATG	2 cut(s)	342, 810
BsrI	ACTGG	3 cut(s)	175, 189, 966
BssECI	CCNNGG	3 cut(s)	107, 118, 889
BssMI	GATC	3 cut(s)	262, 400, 1015
BssNAI	GTATAC	1 cut(s)	976
BssSI	CACGAG	1 cut(s)	432
BssT1I	CCWWGG	2 cut(s)	118, 889
Bst1107I	GTATAC	1 cut(s)	976
Bst2BI	CACGAG	1 cut(s)	432
Bst2UI	CCWGG	2 cut(s)	108, 852
Bst4CI	ACNGT	5 cut(s)	323, 355, 534, 902, 980
Bst6I	CTCTTC	1 cut(s)	867
BstAFI	CTTAAG	1 cut(s)	878
BstAPI	GCANNNNNTGC	2 cut(s)	491, 821
BstC8I	GCNNGC	6 cut(s)	130, 169, 376, 385, 421, 860
BstDEI	CTNAG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	316
BstH2I	RGCGCY	3 cut(s)	59, 86, 150
BstHHI	GCGC	3 cut(s)	58, 85, 149
BstKTI	GATC	3 cut(s)	265, 403, 1018
BstMAI	GTCTC	4 cut(s)	33, 75, 146, 414
BstMBI	GATC	3 cut(s)	262, 400, 1015
BstMWI	GCNNNNNNNGC	6 cut(s)	129, 380, 384, 491, 548, 821
BstNI	CCWGG	2 cut(s)	108, 852
BstNSI	RCATGY	1 cut(s)	862
BstSCI	CCNGG	2 cut(s)	106, 850
BstV1I	GCAGC	4 cut(s)	196, 210, 494, 808
BstV2I	GAAGAC	1 cut(s)	942
BstZ17I	GTATAC	1 cut(s)	976
BsuI	GTATCC	2 cut(s)	746, 851
BsuRI	GGCC	3 cut(s)	77, 123, 965
BtsCI	GGATG	1 cut(s)	316
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	2 cut(s)	196, 558
Cac8I	GCNNGC	6 cut(s)	130, 169, 376, 385, 421, 860
CfoI	GCGC	3 cut(s)	58, 85, 149
Cfr13I	GGNCC	2 cut(s)	122, 886
CseI	GACGC	2 cut(s)	15, 821
CspCI	CAANNNNNGTGG	2 cut(s)	762, 797
CviAII	CATG	1 cut(s)	859
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	3 cut(s)	264, 402, 1017
DpnII	GATC	3 cut(s)	262, 400, 1015
EaeI	YGGCCR	2 cut(s)	75, 963
Eam1104I	CTCTTC	1 cut(s)	867
EarI	CTCTTC	1 cut(s)	867
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	2 cut(s)	118, 889
Eco31I	GGTCTC	1 cut(s)	146
Eco32I	GATATC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	886
Eco47III	AGCGCT	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	65
EcoO109I	RGGNCCY	2 cut(s)	122, 886
EcoRII	CCWGG	2 cut(s)	106, 850
EcoRV	GATATC	1 cut(s)	204
EcoT14I	CCWWGG	2 cut(s)	118, 889
ErhI	CCWWGG	2 cut(s)	118, 889
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	1 cut(s)	862
FaiI	YATR	9 cut(s)	429, 667, 695, 860, 909, 930, 976, 1029, 1045
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FaqI	GGGAC	1 cut(s)	1003
FatI	CATG	1 cut(s)	858
FblI	GTMKAC	1 cut(s)	975
Fnu4HI	GCNGC	6 cut(s)	59, 62, 210, 224, 483, 822
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	6 cut(s)	59, 62, 210, 224, 483, 822
FspBI	CTAG	4 cut(s)	629, 674, 818, 890
GlaI	GCGC	3 cut(s)	57, 84, 148
GluI	GCNGC	6 cut(s)	59, 62, 210, 224, 483, 822
GsuI	CTGGAG	2 cut(s)	119, 621
HaeII	RGCGCY	3 cut(s)	59, 86, 150
HaeIII	GGCC	3 cut(s)	77, 123, 965
HapII	CCGG	2 cut(s)	74, 91
HgaI	GACGC	2 cut(s)	15, 821
HhaI	GCGC	3 cut(s)	58, 85, 149
Hin1II	CATG	1 cut(s)	862
Hin6I	GCGC	3 cut(s)	56, 83, 147
HinP1I	GCGC	3 cut(s)	56, 83, 147
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	4 cut(s)	50, 68, 94, 1021
HpaII	CCGG	2 cut(s)	74, 91
HphI	GGTGA	2 cut(s)	107, 178
Hpy166II	GTNNAC	2 cut(s)	115, 976
Hpy188I	TCNGA	7 cut(s)	22, 498, 514, 538, 830, 955, 1020
Hpy188III	TCNNGA	4 cut(s)	98, 346, 734, 983
Hpy8I	GTNNAC	2 cut(s)	115, 976
HpyAV	CCTTC	3 cut(s)	643, 695, 980
HpyCH4III	ACNGT	5 cut(s)	323, 355, 534, 902, 980
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	4 cut(s)	335, 626, 808, 1004
HpyF10VI	GCNNNNNNNGC	6 cut(s)	129, 380, 384, 491, 548, 821
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	1 cut(s)	862
HspAI	GCGC	3 cut(s)	56, 83, 147
Kzo9I	GATC	3 cut(s)	262, 400, 1015
LguI	GCTCTTC	1 cut(s)	867
LmnI	GCTCC	2 cut(s)	90, 602
Lsp1109I	GCAGC	4 cut(s)	196, 210, 494, 808
LweI	GCATC	6 cut(s)	13, 459, 481, 529, 586, 613
MaeI	CTAG	4 cut(s)	629, 674, 818, 890
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	2 cut(s)	323, 932
MalI	GATC	3 cut(s)	264, 402, 1017
MboI	GATC	3 cut(s)	262, 400, 1015
MboII	GAAGA	7 cut(s)	410, 575, 653, 884, 923, 926, 942
MlsI	TGGCCA	1 cut(s)	965
MluCI	AATT	3 cut(s)	276, 294, 522
MluNI	TGGCCA	1 cut(s)	965
MlyI	GAGTC	2 cut(s)	77, 1030
MmeI	TCCRAC	1 cut(s)	730
Mox20I	TGGCCA	1 cut(s)	965
MroXI	GAANNNNTTC	1 cut(s)	653
MscI	TGGCCA	1 cut(s)	965
MseI	TTAA	1 cut(s)	879
Msp20I	TGGCCA	1 cut(s)	965
MspA1I	CMGCKG	1 cut(s)	946
MspCI	CTTAAG	1 cut(s)	878
MspI	CCGG	2 cut(s)	74, 91
MspR9I	CCNGG	2 cut(s)	108, 852
Mva1269I	GAATGC	3 cut(s)	337, 387, 587
MvaI	CCWGG	2 cut(s)	108, 852
MwoI	GCNNNNNNNGC	6 cut(s)	129, 380, 384, 491, 548, 821
NdeII	GATC	3 cut(s)	262, 400, 1015
NlaIII	CATG	1 cut(s)	862
NspI	RCATGY	1 cut(s)	862
PaeI	GCATGC	1 cut(s)	862
PciSI	GCTCTTC	1 cut(s)	867
PctI	GAATGC	3 cut(s)	337, 387, 587
PdmI	GAANNNNTTC	1 cut(s)	653
PfeI	GAWTC	2 cut(s)	50, 94
PkrI	GCNGC	6 cut(s)	60, 63, 211, 225, 484, 823
PleI	GAGTC	2 cut(s)	76, 1029
PpsI	GAGTC	2 cut(s)	76, 1029
PpuMI	RGGWCCY	1 cut(s)	886
Psp5II	RGGWCCY	1 cut(s)	886
Psp6I	CCWGG	2 cut(s)	106, 850
PspGI	CCWGG	2 cut(s)	106, 850
PspPI	GGNCC	2 cut(s)	122, 886
PspPPI	RGGWCCY	1 cut(s)	886
PvuII	CAGCTG	1 cut(s)	946
SapI	GCTCTTC	1 cut(s)	867
SaqAI	TTAA	1 cut(s)	879
SatI	GCNGC	6 cut(s)	59, 62, 210, 224, 483, 822
Sau3AI	GATC	3 cut(s)	262, 400, 1015
Sau96I	GGNCC	2 cut(s)	122, 886
SchI	GAGTC	2 cut(s)	77, 1030
ScrFI	CCNGG	2 cut(s)	108, 852
SfaNI	GCATC	6 cut(s)	13, 459, 481, 529, 586, 613
SinI	GGWCC	1 cut(s)	886
SmlI	CTYRAG	2 cut(s)	740, 878
SmoI	CTYRAG	2 cut(s)	740, 878
SphI	GCATGC	1 cut(s)	862
Sse9I	AATT	3 cut(s)	276, 294, 522
SsiI	CCGC	6 cut(s)	59, 62, 88, 423, 472, 922
SspMI	CTAG	4 cut(s)	629, 674, 818, 890
StyD4I	CCNGG	2 cut(s)	106, 850
StyI	CCWWGG	2 cut(s)	118, 889
TaaI	ACNGT	5 cut(s)	323, 355, 534, 902, 980
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	1 cut(s)	200
TasI	AATT	3 cut(s)	276, 294, 522
TauI	GCSGC	2 cut(s)	61, 64
TfiI	GAWTC	2 cut(s)	50, 94
Tru1I	TTAA	1 cut(s)	879
Tru9I	TTAA	1 cut(s)	879
TscAI	CASTG	2 cut(s)	196, 558
TseI	GCWGC	4 cut(s)	209, 223, 482, 821
TspDTI	ATGAA	4 cut(s)	353, 607, 662, 924
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	2 cut(s)	196, 558
Vha464I	CTTAAG	1 cut(s)	878
VpaK11BI	GGWCC	1 cut(s)	886
XceI	RCATGY	1 cut(s)	862
XmaJI	CCTAGG	1 cut(s)	889
XmiI	GTMKAC	1 cut(s)	975
XmnI	GAANNNNTTC	1 cut(s)	653
XspI	CTAG	4 cut(s)	629, 674, 818, 890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.