Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004495

Physical Location & Seq

Genomic Coordinates Reverse (-)

33797704 .. 33801710

Gene Structure 4007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008633

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAAAGCCCCAGCAAGTCAAATGCGTCTCCTTTTCTTACCACAAGGATCCCCGCAGCTGACTCAGGAGAATCAGCGCCGCTGCCGGAGTCTCCGGCTAAAGCGCTTCGCCGGATTCTGGAGTTGCCAGGGGTTCACCAAGGCCCTGCTTGCTTTAATGGTCTCAGCGCCAAGCTTATTGAAAGAGCTGGCTTCCAGTATTGCTTCACCAGTGGATTTTCGATATCAGCTGCTACATTAGGGCTGCCAGATACAGGTTTTCTATCCTATGGAGAAATGGTGGATCAGGGGCAACAAATTACCCAAGCTGTGTCAATTCCTGTCATTGGGGATGGCGACAACGGTTATGGGAATGCAATGAATGTCAAGAGAACTGTCAAGGGATATATTAGAGCTGGCTTTGCTGGGATTCTGCTTGAAGATCAGGTGTCTCCAAAAGCCTGTGGTCATACACGAGGCAGGAAAGTGGTGTCAAGGGAGGAAGCTGTGATGCGGATAAAAGCAGCAGTTGATGCTCGGAAAGAGAGTGGCTCTGACATTGTAATTGTAGCACGATCTGATGCTCGTCAAGCAGTGTCTTTGGAAGAAGCACTTTGGAGGTCAAGGGCATTCGCTGATGCTGGAGCAGATGTTCTTTTCATTGATGCACTAGCCTCAAAAGAAGAAATGAAGGCTTTCTGTGGAGTATATCCCCTAGTTCCAAAAATGGCGAATATGCTTGAAGGAGGGGCAAAAACACCAATACTCAATCCTCTTGAACTTGAGGAAGTTGGATACAAACTTGTGGTTTATCCACTTTCCTTGATTGGGGTATCTATTCAAGCAATGCAGGACGCACTAGCTGCTATCAGAGGAGGTCGTATCCCTCCACCTGGAAGCATGCCATCTTTTGAAGAGCTTAAGGAGGTCCTAGGTTTCAACAGTTATTATGAAGAAGAAAAGCGGTATTATAGTAATAGCAGTCAGCTGTCTTCTGAAAGATGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEP_mutase

Protein Analysis

330

Amino Acids

35.32

Weight (kDa)

5.53

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEP_mutase	PF13714	49 - 283	2.4e-45	Phosphoenolpyruvate phosphomutase
ICL	PF00463	106 - 193	1.1e-12	Isocitrate lyase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43180 AT2G43180 AT2G43180 AT2G43180
fragaria_vesca	FvH4_4g11620 FvH4_4g11620
malus_domestica	MD04G1031000.v1.1
prunus_persica	Prupe.1G182700_v2.0.a1 Prupe.1G182700_v2.0.a1 Prupe.1G182700_v2.0.a1
pyrus_communis	pycom04g02620
rosa_chinensis	RchiOBHm_Chr4g0408741 RchiOBHm_Chr4g0408751
rosa_laevigata	RLG00000008633 RLG00000008634
rosa_multiflora	Rmu_sc0001258.1_g000006 Rmu_sc0005878.1_g000017 Rmu_sc0007333.1_g000009
rosa_roxburghii	Rroxscaffold_5G00353090
rosa_rugosa	Rorug04G0087300
rosa_samantha	Rh1DG149900 Rh4AG151500 Rh4AG151600 Rh4BG148700 Rh4BG148800 Rh4CG159600 Rh4CG159800 Rh4DG144700 Rh4DG144800
rosa_wichuraiana	Rw0G015170 Rw4G012420 Rw4G012440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	54, 80, 493, 943
AclWI	GGATC	3 cut(s)	43, 56, 291
AfeI	AGCGCT	1 cut(s)	105
AfiI	CCNNNNNNNGG	5 cut(s)	118, 254, 326, 807, 872
AflII	CTTAAG	1 cut(s)	899
AgsI	TTSAA	7 cut(s)	182, 419, 722, 758, 821, 893, 919
AjnI	CCWGG	2 cut(s)	127, 871
AloI	GAACNNNNNNTCC	2 cut(s)	615, 647
Alw26I	GTCTC	4 cut(s)	33, 96, 167, 435
AlwI	GGATC	3 cut(s)	43, 56, 291
Aor51HI	AGCGCT	1 cut(s)	105
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	6 cut(s)	56, 82, 230, 244, 503, 842
Asp700I	GAANNNNTTC	1 cut(s)	674
AspA2I	CCTAGG	1 cut(s)	910
AspLEI	GCGC	3 cut(s)	79, 106, 170
AspS9I	GGNCC	2 cut(s)	143, 907
AsuHPI	GGTGA	2 cut(s)	128, 199
AvaII	GGWCC	1 cut(s)	907
AvrII	CCTAGG	1 cut(s)	910
BamHI	GGATCC	1 cut(s)	48
BauI	CACGAG	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	963
BbvI	GCAGC	6 cut(s)	68, 69, 217, 231, 515, 829
BccI	CCATC	2 cut(s)	326, 892
BciT130I	CCWGG	2 cut(s)	129, 873
BciVI	GTATCC	2 cut(s)	767, 872
BcoDI	GTCTC	4 cut(s)	33, 96, 167, 435
BfaI	CTAG	4 cut(s)	650, 695, 839, 911
BfoI	RGCGCY	3 cut(s)	80, 107, 171
BfrI	CTTAAG	1 cut(s)	899
BfuI	GTATCC	2 cut(s)	767, 872
BisI	GCNGC	7 cut(s)	57, 80, 83, 231, 245, 504, 843
BlnI	CCTAGG	1 cut(s)	910
BlsI	GCNGC	7 cut(s)	58, 81, 84, 232, 246, 505, 844
Bme1390I	CCNGG	2 cut(s)	129, 873
Bme18I	GGWCC	1 cut(s)	907
BmgT120I	GGNCC	2 cut(s)	143, 907
BmiI	GGNNCC	1 cut(s)	50
BmrFI	CCNGG	2 cut(s)	129, 873
BmsI	GCATC	5 cut(s)	480, 502, 550, 607, 634
BpiI	GAAGAC	1 cut(s)	963
BplI	GAGNNNNNCTC	2 cut(s)	515, 547
BpmI	CTGGAG	2 cut(s)	140, 642
BpuEI	CTTGAG	1 cut(s)	782
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	3 cut(s)	128, 139, 910
BsaXI	ACNNNNNCTCC	4 cut(s)	264, 294, 615, 645
Bsc4I	CCNNNNNNNGG	5 cut(s)	118, 254, 326, 807, 872
Bse1I	ACTGG	2 cut(s)	196, 210
Bse3DI	GCAATG	2 cut(s)	363, 831
BseBI	CCWGG	2 cut(s)	129, 873
BseDI	CCNNGG	3 cut(s)	128, 139, 910
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	5 cut(s)	118, 254, 326, 807, 872
BseMI	GCAATG	2 cut(s)	363, 831
BseMII	CTCAG	2 cut(s)	78, 178
BseNI	ACTGG	2 cut(s)	196, 210
BseRI	GAGGAG	1 cut(s)	867
BseXI	GCAGC	6 cut(s)	68, 69, 217, 231, 515, 829
BseYI	CCCAGC	2 cut(s)	11, 404
BshFI	GGCC	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	86, 95, 112
BslI	CCNNNNNNNGG	5 cut(s)	118, 254, 326, 807, 872
BsmAI	GTCTC	4 cut(s)	33, 96, 167, 435
BsmBI	CGTCTC	1 cut(s)	33
BsmI	GAATGC	2 cut(s)	358, 608
BsnI	GGCC	1 cut(s)	144
Bso31I	GGTCTC	1 cut(s)	167
Bsp143I	GATC	4 cut(s)	48, 283, 421, 554
BspACI	CCGC	4 cut(s)	54, 80, 493, 943
BspANI	GGCC	1 cut(s)	144
BspCNI	CTCAG	2 cut(s)	77, 177
BspLI	GGNNCC	1 cut(s)	50
BspPI	GGATC	3 cut(s)	43, 56, 291
BspQI	GCTCTTC	1 cut(s)	888
BspTI	CTTAAG	1 cut(s)	899
BspTNI	GGTCTC	1 cut(s)	167
BsrDI	GCAATG	2 cut(s)	363, 831
BsrI	ACTGG	2 cut(s)	196, 210
BssECI	CCNNGG	3 cut(s)	128, 139, 910
BssMI	GATC	4 cut(s)	48, 283, 421, 554
BssSI	CACGAG	1 cut(s)	453
BssT1I	CCWWGG	2 cut(s)	139, 910
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	2 cut(s)	129, 873
Bst4CI	ACNGT	3 cut(s)	344, 376, 923
Bst6I	CTCTTC	1 cut(s)	888
BstAFI	CTTAAG	1 cut(s)	899
BstAPI	GCANNNNNTGC	2 cut(s)	512, 842
BstC8I	GCNNGC	4 cut(s)	151, 190, 397, 881
BstDEI	CTNAG	2 cut(s)	64, 164
BstF5I	GGATG	1 cut(s)	337
BstH2I	RGCGCY	3 cut(s)	80, 107, 171
BstHHI	GCGC	3 cut(s)	79, 106, 170
BstKTI	GATC	4 cut(s)	51, 286, 424, 557
BstMAI	GTCTC	4 cut(s)	33, 96, 167, 435
BstMBI	GATC	4 cut(s)	48, 283, 421, 554
BstMWI	GCNNNNNNNGC	5 cut(s)	150, 401, 512, 569, 842
BstNI	CCWGG	2 cut(s)	129, 873
BstNSI	RCATGY	1 cut(s)	883
BstSCI	CCNGG	2 cut(s)	127, 871
BstV1I	GCAGC	6 cut(s)	68, 69, 217, 231, 515, 829
BstV2I	GAAGAC	1 cut(s)	963
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BsuI	GTATCC	2 cut(s)	767, 872
BsuRI	GGCC	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	337
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	2 cut(s)	217, 579
Cac8I	GCNNGC	4 cut(s)	151, 190, 397, 881
CfoI	GCGC	3 cut(s)	79, 106, 170
Cfr13I	GGNCC	2 cut(s)	143, 907
CseI	GACGC	2 cut(s)	15, 842
CspCI	CAANNNNNGTGG	2 cut(s)	783, 818
CviAII	CATG	1 cut(s)	880
DdeI	CTNAG	2 cut(s)	64, 164
DpnI	GATC	4 cut(s)	50, 285, 423, 556
DpnII	GATC	4 cut(s)	48, 283, 421, 554
Eam1104I	CTCTTC	1 cut(s)	888
EarI	CTCTTC	1 cut(s)	888
Eco130I	CCWWGG	2 cut(s)	139, 910
Eco31I	GGTCTC	1 cut(s)	167
Eco32I	GATATC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	907
Eco47III	AGCGCT	1 cut(s)	105
EcoO109I	RGGNCCY	2 cut(s)	143, 907
EcoRII	CCWGG	2 cut(s)	127, 871
EcoRV	GATATC	1 cut(s)	225
EcoT14I	CCWWGG	2 cut(s)	139, 910
ErhI	CCWWGG	2 cut(s)	139, 910
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	1 cut(s)	883
FaiI	YATR	9 cut(s)	270, 348, 387, 450, 688, 716, 881, 930, 951
FalI	AAGNNNNNCTT	2 cut(s)	576, 608
FatI	CATG	1 cut(s)	879
FauI	CCCGC	1 cut(s)	61
Fnu4HI	GCNGC	7 cut(s)	57, 80, 83, 231, 245, 504, 843
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	7 cut(s)	57, 80, 83, 231, 245, 504, 843
FspBI	CTAG	4 cut(s)	650, 695, 839, 911
GlaI	GCGC	3 cut(s)	78, 105, 169
GluI	GCNGC	7 cut(s)	57, 80, 83, 231, 245, 504, 843
GsaI	CCCAGC	2 cut(s)	15, 408
GsuI	CTGGAG	2 cut(s)	140, 642
HaeII	RGCGCY	3 cut(s)	80, 107, 171
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	3 cut(s)	86, 95, 112
HgaI	GACGC	2 cut(s)	15, 842
HhaI	GCGC	3 cut(s)	79, 106, 170
Hin1II	CATG	1 cut(s)	883
Hin6I	GCGC	3 cut(s)	77, 104, 168
HinP1I	GCGC	3 cut(s)	77, 104, 168
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	5 cut(s)	62, 71, 89, 115, 409
HpaII	CCGG	3 cut(s)	86, 95, 112
HphI	GGTGA	2 cut(s)	128, 199
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	5 cut(s)	519, 535, 559, 851, 976
Hpy188III	TCNNGA	4 cut(s)	66, 119, 367, 755
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	2 cut(s)	664, 716
HpyCH4III	ACNGT	3 cut(s)	344, 376, 923
HpyCH4V	TGCA	3 cut(s)	356, 647, 829
HpyF10VI	GCNNNNNNNGC	5 cut(s)	150, 401, 512, 569, 842
HpyF3I	CTNAG	2 cut(s)	64, 164
Hsp92II	CATG	1 cut(s)	883
HspAI	GCGC	3 cut(s)	77, 104, 168
Kzo9I	GATC	4 cut(s)	48, 283, 421, 554
LguI	GCTCTTC	1 cut(s)	888
LmnI	GCTCC	1 cut(s)	623
Lsp1109I	GCAGC	6 cut(s)	68, 69, 217, 231, 515, 829
LweI	GCATC	5 cut(s)	480, 502, 550, 607, 634
MaeI	CTAG	4 cut(s)	650, 695, 839, 911
MalI	GATC	4 cut(s)	50, 285, 423, 556
MboI	GATC	4 cut(s)	48, 283, 421, 554
MboII	GAAGA	7 cut(s)	431, 596, 674, 905, 944, 947, 963
MflI	RGATCY	1 cut(s)	48
MluCI	AATT	3 cut(s)	297, 315, 543
MlyI	GAGTC	2 cut(s)	56, 98
MmeI	TCCRAC	1 cut(s)	751
MroXI	GAANNNNTTC	1 cut(s)	674
MseI	TTAA	2 cut(s)	156, 900
MspA1I	CMGCKG	4 cut(s)	59, 82, 230, 967
MspCI	CTTAAG	1 cut(s)	899
MspI	CCGG	3 cut(s)	86, 95, 112
MspR9I	CCNGG	2 cut(s)	129, 873
Mva1269I	GAATGC	2 cut(s)	358, 608
MvaI	CCWGG	2 cut(s)	129, 873
MwoI	GCNNNNNNNGC	5 cut(s)	150, 401, 512, 569, 842
NdeII	GATC	4 cut(s)	48, 283, 421, 554
NlaIII	CATG	1 cut(s)	883
NlaIV	GGNNCC	1 cut(s)	50
NspI	RCATGY	1 cut(s)	883
PaeI	GCATGC	1 cut(s)	883
PciSI	GCTCTTC	1 cut(s)	888
PctI	GAATGC	2 cut(s)	358, 608
PdmI	GAANNNNTTC	1 cut(s)	674
PfeI	GAWTC	3 cut(s)	71, 115, 409
PkrI	GCNGC	7 cut(s)	58, 81, 84, 232, 246, 505, 844
PleI	GAGTC	2 cut(s)	56, 97
PpsI	GAGTC	2 cut(s)	56, 97
PpuMI	RGGWCCY	1 cut(s)	907
Psp5II	RGGWCCY	1 cut(s)	907
Psp6I	CCWGG	2 cut(s)	127, 871
PspFI	CCCAGC	2 cut(s)	11, 404
PspGI	CCWGG	2 cut(s)	127, 871
PspN4I	GGNNCC	1 cut(s)	50
PspPI	GGNCC	2 cut(s)	143, 907
PspPPI	RGGWCCY	1 cut(s)	907
PsuI	RGATCY	1 cut(s)	48
PvuII	CAGCTG	3 cut(s)	59, 230, 967
SapI	GCTCTTC	1 cut(s)	888
SaqAI	TTAA	2 cut(s)	156, 900
SatI	GCNGC	7 cut(s)	57, 80, 83, 231, 245, 504, 843
Sau3AI	GATC	4 cut(s)	48, 283, 421, 554
Sau96I	GGNCC	2 cut(s)	143, 907
SchI	GAGTC	2 cut(s)	56, 98
ScrFI	CCNGG	2 cut(s)	129, 873
SfaNI	GCATC	5 cut(s)	480, 502, 550, 607, 634
SinI	GGWCC	1 cut(s)	907
SmlI	CTYRAG	2 cut(s)	761, 899
SmoI	CTYRAG	2 cut(s)	761, 899
SphI	GCATGC	1 cut(s)	883
Sse9I	AATT	3 cut(s)	297, 315, 543
SsiI	CCGC	4 cut(s)	54, 80, 493, 943
SspMI	CTAG	4 cut(s)	650, 695, 839, 911
StyD4I	CCNGG	2 cut(s)	127, 871
StyI	CCWWGG	2 cut(s)	139, 910
TaaI	ACNGT	3 cut(s)	344, 376, 923
TaqI	TCGA	1 cut(s)	221
TasI	AATT	3 cut(s)	297, 315, 543
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	3 cut(s)	71, 115, 409
Tru1I	TTAA	2 cut(s)	156, 900
Tru9I	TTAA	2 cut(s)	156, 900
TscAI	CASTG	2 cut(s)	217, 579
TseI	GCWGC	6 cut(s)	56, 82, 230, 244, 503, 842
TspDTI	ATGAA	4 cut(s)	374, 628, 683, 945
TspRI	CASTG	2 cut(s)	217, 579
Vha464I	CTTAAG	1 cut(s)	899
VpaK11BI	GGWCC	1 cut(s)	907
XceI	RCATGY	1 cut(s)	883
XmaJI	CCTAGG	1 cut(s)	910
XmnI	GAANNNNTTC	1 cut(s)	674
XspI	CTAG	4 cut(s)	650, 695, 839, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.