Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00691

Orthogroup ID

OG0004495

Physical Location & Seq

Genomic Coordinates Forward (+)

29040 .. 33029

Gene Structure 3990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G015170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGAAGAAGCACACAAGGAACCTACGATTTTCGATATCAGCTGCTAGATTAGGACTGCCAGATACAGGTTTTCTATCCTACGGAGAAATGGTGGATCAGGGGCAACAAATTACCCAAGCTGTGTCAATTCCGGTCATTGGGGATGGCGATAATGGTTACGGGAATGCAATGAATGTCAAGAGAACTGTCAAGGGATATATAAGAGCTGGTTTTGCTGGGATTCTGCTTGAAGATCAGGTGTCTCCAAAAGCCTGCGGTCATACACAAGGCAGGAAAGTGGTGTCAAGGGAGGAAGCTGTGATGCGGATAAAAGCAGCAGTTGATGCTCGGAAAGAGAGTGGCTCTGACAATGTAATTGTAGCACGATCTGATTCTCGTCAAGCAGTGTCTTTGGAAGAAGCACTTTGGAGGTCAAGGGCATTCGCTGATGCTGGAGCAGATGTTCTTTTCATTGATGCACTAGCCTCAAAAGAAGAAATGAAGGCTTTCTGTGGAGTATATCCCCTAGTTCCAAAAATGGTACATTACATTTTCCATAGCACAAACCACAAAAGTAGAAAGCAACAACGATCCCATGTTGCTGAAGACTTGGATTTATTACATGGCTATTCTACATTTTCATGCCCAAGGGCTTTTGCATACCTTTCGCTTATTGCTTCTATACATGTAGCTGTTGGTAACCTAGACAGGATTGTAAAAAATTGGGGGAAAACACCAATACTCAATCCTCTTGAACTTGAGGAAGTTGGATACAAACTTGTGGCTTATCCACTTTCCTTGATTGGGGTATCTATTCAAGCAATGCAGGACGCACTTGCTGCTATCAGAGGAGGTCGTATCCCTCCACCTGGAAGCATGCCATCTTTTGAAGAGGTTAAGGAGGTCCTAGGTTTCAACAGTTATTATGAAGAAGAAAAGCGGTATTATAGTAACAGCAGTCAGCTGTCTTCTGAAAGATTGGCCAGTAGTGTATACAGTCTTCAAGGGACATCTAAAAATGCAGAACCAAAAGATCAGAGTCCTCAAGATCCCATTGTTGAAGTTATAACACCTGAAGTGTACAATAACTATGGTGCTGATGGTTTCAAGGATTCATTTTCCGGGATCTGGTCTCGGAAATTGAGAATCAAAATAACTGGAAGAGATGGATTTGAGAAACTTGATGTTAGAATTCCTGCTAGATTCTTGGACGGTATCACCAATATAGTTCCAGCTCTTGGGGGTGTAAACATCAAAGAATTGTTGAATGAGGCAGCTGATGAAATGGGAGGGAAGCAGCTGTTAGATTTTAATGACACAATGGGTGATAGAATTCAAGTTTTTCTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEP_mutase

Protein Analysis

443

Amino Acids

48.8

Weight (kDa)

6.74

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEP_mutase	PF13714	14 - 170	3.5e-33	Phosphoenolpyruvate phosphomutase
ICL	PF00463	43 - 130	2.8e-12	Isocitrate lyase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43180 AT2G43180 AT2G43180 AT2G43180
fragaria_vesca	FvH4_4g11620 FvH4_4g11620
malus_domestica	MD04G1031000.v1.1
prunus_persica	Prupe.1G182700_v2.0.a1 Prupe.1G182700_v2.0.a1 Prupe.1G182700_v2.0.a1
pyrus_communis	pycom04g02620
rosa_chinensis	RchiOBHm_Chr4g0408741 RchiOBHm_Chr4g0408751
rosa_laevigata	RLG00000008633 RLG00000008634
rosa_multiflora	Rmu_sc0001258.1_g000006 Rmu_sc0005878.1_g000017 Rmu_sc0007333.1_g000009
rosa_roxburghii	Rroxscaffold_5G00353090
rosa_rugosa	Rorug04G0087300
rosa_samantha	Rh1DG149900 Rh4AG151500 Rh4AG151600 Rh4BG148700 Rh4BG148800 Rh4CG159600 Rh4CG159800 Rh4DG144700 Rh4DG144800
rosa_wichuraiana	Rw0G015170 Rw4G012420 Rw4G012440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1046
AccB7I	CCANNNNNTGG	1 cut(s)	1217
AccI	GTMKAC	1 cut(s)	972
AciI	CCGC	3 cut(s)	255, 304, 919
AclWI	GGATC	4 cut(s)	102, 564, 1022, 1112
AcoI	YGGCCR	1 cut(s)	960
AcsI	RAATTY	2 cut(s)	1170, 1311
AcuI	CTGAAG	2 cut(s)	603, 1074
AfaI	GTAC	2 cut(s)	522, 1061
AfiI	CCNNNNNNNGG	6 cut(s)	65, 137, 783, 848, 1107, 1217
AflIII	ACRYGT	1 cut(s)	664
AjnI	CCWGG	1 cut(s)	847
AloI	GAACNNNNNNTCC	2 cut(s)	426, 458
AluBI	AGCT	9 cut(s)	41, 119, 206, 296, 671, 943, 1214, 1256, 1279
AluI	AGCT	9 cut(s)	41, 119, 206, 296, 671, 943, 1214, 1256, 1279
Alw26I	GTCTC	2 cut(s)	246, 1116
AlwI	GGATC	4 cut(s)	102, 564, 1022, 1112
AoxI	GGCC	1 cut(s)	960
ApeKI	GCWGC	5 cut(s)	41, 314, 818, 1253, 1276
ApoI	RAATTY	2 cut(s)	1170, 1311
Asp700I	GAANNNNTTC	1 cut(s)	485
AspA2I	CCTAGG	1 cut(s)	886
AspS9I	GGNCC	1 cut(s)	883
AsuC2I	CCSGG	1 cut(s)	1102
AsuHPI	GGTGA	2 cut(s)	1189, 1316
AvaII	GGWCC	1 cut(s)	883
AvrII	CCTAGG	1 cut(s)	886
BalI	TGGCCA	1 cut(s)	962
BarI	GAAGNNNNNNTAC	2 cut(s)	963, 995
BbsI	GAAGAC	3 cut(s)	591, 939, 971
BbvI	GCAGC	5 cut(s)	28, 326, 805, 1265, 1288
BccI	CCATC	4 cut(s)	137, 868, 1073, 1139
BcgI	CGANNNNNNTGC	2 cut(s)	627, 661
BciT130I	CCWGG	1 cut(s)	849
BciVI	GTATCC	2 cut(s)	743, 848
BcnI	CCSGG	1 cut(s)	1102
BcoDI	GTCTC	2 cut(s)	246, 1116
BfaI	CTAG	7 cut(s)	45, 461, 506, 683, 887, 1179, 1325
BfuI	GTATCC	2 cut(s)	743, 848
BisI	GCNGC	5 cut(s)	42, 315, 819, 1254, 1277
BlnI	CCTAGG	1 cut(s)	886
BlsI	GCNGC	5 cut(s)	43, 316, 820, 1255, 1278
Bme1390I	CCNGG	2 cut(s)	849, 1102
Bme18I	GGWCC	1 cut(s)	883
BmgT120I	GGNCC	1 cut(s)	883
BmiI	GGNNCC	1 cut(s)	20
BmrFI	CCNGG	2 cut(s)	849, 1102
BmsI	GCATC	4 cut(s)	291, 313, 418, 445
BpiI	GAAGAC	3 cut(s)	591, 939, 971
BplI	GAGNNNNNCTC	2 cut(s)	326, 358
BpmI	CTGGAG	1 cut(s)	453
BpuEI	CTTGAG	2 cut(s)	758, 1008
BpuMI	CCSGG	1 cut(s)	1102
BsaI	GGTCTC	1 cut(s)	1116
BsaJI	CCNNGG	2 cut(s)	626, 886
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	4 cut(s)	75, 105, 426, 456
Bsc4I	CCNNNNNNNGG	6 cut(s)	65, 137, 783, 848, 1107, 1217
Bse1I	ACTGG	2 cut(s)	963, 1141
Bse3DI	GCAATG	2 cut(s)	174, 807
BseBI	CCWGG	1 cut(s)	849
BseDI	CCNNGG	2 cut(s)	626, 886
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	6 cut(s)	65, 137, 783, 848, 1107, 1217
BseMI	GCAATG	2 cut(s)	174, 807
BseNI	ACTGG	2 cut(s)	963, 1141
BseRI	GAGGAG	1 cut(s)	843
BseXI	GCAGC	5 cut(s)	28, 326, 805, 1265, 1288
BseYI	CCCAGC	1 cut(s)	215
BshFI	GGCC	1 cut(s)	962
BsiSI	CCGG	2 cut(s)	131, 1101
BslFI	GGGAC	1 cut(s)	1000
BslI	CCNNNNNNNGG	6 cut(s)	65, 137, 783, 848, 1107, 1217
BsmAI	GTCTC	2 cut(s)	246, 1116
BsmFI	GGGAC	1 cut(s)	1000
BsmI	GAATGC	2 cut(s)	169, 419
BsnI	GGCC	1 cut(s)	962
Bso31I	GGTCTC	1 cut(s)	1116
Bsp1407I	TGTACA	1 cut(s)	1059
Bsp143I	GATC	7 cut(s)	94, 232, 365, 569, 1012, 1027, 1104
BspACI	CCGC	3 cut(s)	255, 304, 919
BspANI	GGCC	1 cut(s)	962
BspLI	GGNNCC	1 cut(s)	20
BspPI	GGATC	4 cut(s)	102, 564, 1022, 1112
BspTNI	GGTCTC	1 cut(s)	1116
BsrDI	GCAATG	2 cut(s)	174, 807
BsrGI	TGTACA	1 cut(s)	1059
BsrI	ACTGG	2 cut(s)	963, 1141
BssECI	CCNNGG	2 cut(s)	626, 886
BssMI	GATC	7 cut(s)	94, 232, 365, 569, 1012, 1027, 1104
BssNAI	GTATAC	1 cut(s)	973
BssT1I	CCWWGG	2 cut(s)	626, 886
Bst1107I	GTATAC	1 cut(s)	973
Bst2UI	CCWGG	1 cut(s)	849
Bst4CI	ACNGT	4 cut(s)	187, 899, 977, 1193
Bst6I	CTCTTC	2 cut(s)	864, 1135
BstAPI	GCANNNNNTGC	2 cut(s)	323, 818
BstAUI	TGTACA	1 cut(s)	1059
BstC8I	GCNNGC	2 cut(s)	253, 857
BstEII	GGTNACC	1 cut(s)	677
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	7 cut(s)	97, 235, 368, 572, 1015, 1030, 1107
BstMAI	GTCTC	2 cut(s)	246, 1116
BstMBI	GATC	7 cut(s)	94, 232, 365, 569, 1012, 1027, 1104
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 323, 818
BstNI	CCWGG	1 cut(s)	849
BstNSI	RCATGY	2 cut(s)	668, 859
BstPI	GGTNACC	1 cut(s)	677
BstSCI	CCNGG	2 cut(s)	847, 1100
BstV1I	GCAGC	5 cut(s)	28, 326, 805, 1265, 1288
BstV2I	GAAGAC	3 cut(s)	591, 939, 971
BstX2I	RGATCY	2 cut(s)	1027, 1104
BstYI	RGATCY	2 cut(s)	1027, 1104
BstZ17I	GTATAC	1 cut(s)	973
BsuI	GTATCC	2 cut(s)	743, 848
BsuRI	GGCC	1 cut(s)	962
BtsCI	GGATG	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	253, 857
Cfr13I	GGNCC	1 cut(s)	883
CseI	GACGC	1 cut(s)	818
Csp6I	GTAC	2 cut(s)	521, 1060
CspCI	CAANNNNNGTGG	2 cut(s)	759, 794
CviAII	CATG	5 cut(s)	575, 602, 621, 665, 856
CviQI	GTAC	2 cut(s)	521, 1060
DpnI	GATC	7 cut(s)	96, 234, 367, 571, 1014, 1029, 1106
DpnII	GATC	7 cut(s)	94, 232, 365, 569, 1012, 1027, 1104
EaeI	YGGCCR	1 cut(s)	960
Eam1104I	CTCTTC	2 cut(s)	864, 1135
EarI	CTCTTC	2 cut(s)	864, 1135
Eco130I	CCWWGG	2 cut(s)	626, 886
Eco31I	GGTCTC	1 cut(s)	1116
Eco32I	GATATC	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	883
Eco57I	CTGAAG	2 cut(s)	603, 1074
Eco91I	GGTNACC	1 cut(s)	677
EcoO109I	RGGNCCY	1 cut(s)	883
EcoO65I	GGTNACC	1 cut(s)	677
EcoRI	GAATTC	2 cut(s)	1170, 1311
EcoRII	CCWGG	1 cut(s)	847
EcoRV	GATATC	1 cut(s)	36
EcoT14I	CCWWGG	2 cut(s)	626, 886
ErhI	CCWWGG	2 cut(s)	626, 886
FaeI	CATG	5 cut(s)	578, 605, 624, 668, 859
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FaqI	GGGAC	1 cut(s)	1000
FatI	CATG	5 cut(s)	574, 601, 620, 664, 855
FblI	GTMKAC	1 cut(s)	972
Fnu4HI	GCNGC	5 cut(s)	42, 315, 819, 1254, 1277
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	5 cut(s)	42, 315, 819, 1254, 1277
FspBI	CTAG	7 cut(s)	45, 461, 506, 683, 887, 1179, 1325
GluI	GCNGC	5 cut(s)	42, 315, 819, 1254, 1277
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	453
HaeIII	GGCC	1 cut(s)	962
HapII	CCGG	2 cut(s)	131, 1101
HgaI	GACGC	1 cut(s)	818
Hin1II	CATG	5 cut(s)	578, 605, 624, 668, 859
HinfI	GANTC	6 cut(s)	220, 371, 1018, 1091, 1125, 1182
HpaII	CCGG	2 cut(s)	131, 1101
HphI	GGTGA	2 cut(s)	1189, 1316
Hpy166II	GTNNAC	3 cut(s)	973, 1060, 1228
Hpy188I	TCNGA	7 cut(s)	330, 346, 370, 827, 952, 1017, 1116
Hpy188III	TCNNGA	4 cut(s)	178, 731, 1025, 1325
Hpy8I	GTNNAC	3 cut(s)	973, 1060, 1228
HpyAV	CCTTC	1 cut(s)	475
HpyCH4III	ACNGT	4 cut(s)	187, 899, 977, 1193
HpyCH4V	TGCA	5 cut(s)	167, 458, 638, 805, 1001
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 323, 818
Hsp92II	CATG	5 cut(s)	578, 605, 624, 668, 859
Kzo9I	GATC	7 cut(s)	94, 232, 365, 569, 1012, 1027, 1104
LmnI	GCTCC	1 cut(s)	434
Lsp1109I	GCAGC	5 cut(s)	28, 326, 805, 1265, 1288
LweI	GCATC	4 cut(s)	291, 313, 418, 445
MaeI	CTAG	7 cut(s)	45, 461, 506, 683, 887, 1179, 1325
MaeIII	GTNAC	3 cut(s)	155, 677, 929
MalI	GATC	7 cut(s)	96, 234, 367, 571, 1014, 1029, 1106
MboI	GATC	7 cut(s)	94, 232, 365, 569, 1012, 1027, 1104
MflI	RGATCY	2 cut(s)	1027, 1104
MlsI	TGGCCA	1 cut(s)	962
MluCI	AATT	8 cut(s)	108, 126, 354, 700, 1118, 1170, 1238, 1311
MluNI	TGGCCA	1 cut(s)	962
MlyI	GAGTC	1 cut(s)	1027
MmeI	TCCRAC	1 cut(s)	727
Mox20I	TGGCCA	1 cut(s)	962
MroXI	GAANNNNTTC	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	962
MseI	TTAA	2 cut(s)	876, 1290
MslI	CAYNNNNRTG	1 cut(s)	619
Msp20I	TGGCCA	1 cut(s)	962
MspA1I	CMGCKG	4 cut(s)	41, 943, 1256, 1279
MspI	CCGG	2 cut(s)	131, 1101
MspR9I	CCNGG	2 cut(s)	849, 1102
Mva1269I	GAATGC	2 cut(s)	169, 419
MvaI	CCWGG	1 cut(s)	849
MwoI	GCNNNNNNNGC	3 cut(s)	212, 323, 818
NciI	CCSGG	1 cut(s)	1102
NdeII	GATC	7 cut(s)	94, 232, 365, 569, 1012, 1027, 1104
NlaIII	CATG	5 cut(s)	578, 605, 624, 668, 859
NlaIV	GGNNCC	1 cut(s)	20
NspI	RCATGY	2 cut(s)	668, 859
PaeI	GCATGC	1 cut(s)	859
PciI	ACATGT	1 cut(s)	664
PctI	GAATGC	2 cut(s)	169, 419
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	5 cut(s)	220, 371, 1091, 1125, 1182
PflMI	CCANNNNNTGG	1 cut(s)	1217
PfoI	TCCNGGA	1 cut(s)	1100
PkrI	GCNGC	5 cut(s)	43, 316, 820, 1255, 1278
PleI	GAGTC	1 cut(s)	1026
PpsI	GAGTC	1 cut(s)	1026
PpuMI	RGGWCCY	1 cut(s)	883
PscI	ACATGT	1 cut(s)	664
PsiI	TTATAA	1 cut(s)	1046
Psp5II	RGGWCCY	1 cut(s)	883
Psp6I	CCWGG	1 cut(s)	847
PspEI	GGTNACC	1 cut(s)	677
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	847
PspN4I	GGNNCC	1 cut(s)	20
PspPI	GGNCC	1 cut(s)	883
PspPPI	RGGWCCY	1 cut(s)	883
PsuI	RGATCY	2 cut(s)	1027, 1104
PvuII	CAGCTG	4 cut(s)	41, 943, 1256, 1279
RsaI	GTAC	2 cut(s)	522, 1061
RsaNI	GTAC	2 cut(s)	521, 1060
RseI	CAYNNNNRTG	1 cut(s)	619
SaqAI	TTAA	2 cut(s)	876, 1290
SatI	GCNGC	5 cut(s)	42, 315, 819, 1254, 1277
Sau3AI	GATC	7 cut(s)	94, 232, 365, 569, 1012, 1027, 1104
Sau96I	GGNCC	1 cut(s)	883
SchI	GAGTC	1 cut(s)	1027
ScrFI	CCNGG	2 cut(s)	849, 1102
SfaNI	GCATC	4 cut(s)	291, 313, 418, 445
SinI	GGWCC	1 cut(s)	883
SmiMI	CAYNNNNRTG	1 cut(s)	619
SmlI	CTYRAG	2 cut(s)	737, 1023
SmoI	CTYRAG	2 cut(s)	737, 1023
SphI	GCATGC	1 cut(s)	859
Sse9I	AATT	8 cut(s)	108, 126, 354, 700, 1118, 1170, 1238, 1311
SsiI	CCGC	3 cut(s)	255, 304, 919
SspMI	CTAG	7 cut(s)	45, 461, 506, 683, 887, 1179, 1325
StyD4I	CCNGG	2 cut(s)	847, 1100
StyI	CCWWGG	2 cut(s)	626, 886
TaaI	ACNGT	4 cut(s)	187, 899, 977, 1193
TaqI	TCGA	1 cut(s)	32
TasI	AATT	8 cut(s)	108, 126, 354, 700, 1118, 1170, 1238, 1311
TatI	WGTACW	1 cut(s)	1059
TfiI	GAWTC	5 cut(s)	220, 371, 1091, 1125, 1182
Tru1I	TTAA	2 cut(s)	876, 1290
Tru9I	TTAA	2 cut(s)	876, 1290
TscAI	CASTG	1 cut(s)	390
TseI	GCWGC	5 cut(s)	41, 314, 818, 1253, 1276
TspDTI	ATGAA	8 cut(s)	17, 185, 439, 494, 609, 921, 1083, 1275
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	390
Van91I	CCANNNNNTGG	1 cut(s)	1217
VpaK11BI	GGWCC	1 cut(s)	883
XapI	RAATTY	2 cut(s)	1170, 1311
XbaI	TCTAGA	1 cut(s)	1324
XceI	RCATGY	2 cut(s)	668, 859
XmaJI	CCTAGG	1 cut(s)	886
XmiI	GTMKAC	1 cut(s)	972
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	7 cut(s)	45, 461, 506, 683, 887, 1179, 1325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.