MD04G1031000.v1.1

Phosphoenolpyruvate phosphomutase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
3463296 .. 3469593
6298 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1031000.v1.1.491

Sequence Viewer

Length: 1527 bp
ATGAATCCACAGCATCAGGTGTTGCTTAGCAGAAACTGCAGCAGCACTGTCTCTCTTCTCCCCCACAACTCCTCCGCCTCTATCAATCCCACCACCGCATCTTCAAATCTCCCATTTGGGTCATCGTCAGCCCTCCATTTCAATCAACAGCGACCACTTTCACTGCCCCACAAGTTCAAACACACCACTTTCACTGCCAAAAGGGCGGCCCTCCAAACCACCGCAGCTTACTCCGGAGGAGACAGAGAATTGGCCCCCGAGTCTCCGGCCAAAGAGCTCCGTCGGATTCTGGAGTTGCCAGGGGTTGTCCAGGCCCCTGCTTGTTTTGATGCTCTGAGTGCCAAGCTTGTGGAAAGAGCTGGCTTTCAGTGCTGCTTCACTAGCGGATTTTCAATATCGGCTGCTAGATTAGCGTTGCCAGATACAGGTTTTATATCCTATGGAGAAATGGTGGATCAGGGGCAACAAATTACCCAAGCTGTGTCAATTCCTGTTATCGGTGATGGTGATAATGGATATGGGAATGCAATGAATGTGAAGAGAACTGTCAAGGGATACATTAAAGCTGGTTTTGCTGGGATTTTGCTTGAAGATCAGGTCTCTCCAAAAGCTTGTGGTCATACGCAAGGAAGGAAAGTGGTGTCAAGAGAGGAGGCTGTAATGCGGATAAGAGCAGCTGTTGATGCTCGGAAAGAGAGCGGCTCTGACATTGTCATTGTAGCAAGAACTGATTCTCGTCAAGCAGTGTCTTTGGATGAAGCACTCTGGAGATCAAGGGCATTTGCTGATGCTGGTGCAGATGTTCTTTTCATTGACGCACTTGCTTCTAAAGAAGAGATGAAGGCTTTCTGTGGGATATCTCCCTTACTTCCAAAAATGGCTAATATGCTTGAAGGAGGCAAAACGCCAATACTCAACCCACTTGAACTTGAGGATGTTGGGTATAAAATTGTGGCTTATCCGCTTTCCTTGATTGGGGTATCTATTCAAGCAATGCAGGAAGCACTGGCTGGTCTCAAAGGAGGCCGCATCCCTCCTCCTGGAAGTATGCCATCCTTCGAAGAGGTTAAGGAGATTCTAGGTTTCAACAGTTATTATGAAGAAGAAAAACGGTATTCTACCAGCAGCAGTCAGCTATCTCCAGAAAGATTGACCAGTAGTGTATACAGTCTCCAAAGGACCGCTAGAGATGGTGGAGAGCAGAAAGATCAGAATCCTCAAGATCCCATTGTTGAAGTTATAACACCTGACGTGTACAATAACTATGATGCAGATGGTTCCAGGGGTCCATTTTCTGGGATCTGGTCTCGGACGTTGAGGGTCAAAATAACTGGAAGGGATGGCTTTGAGAAACTTGATGTTCGGATTCCTGCTGGATTCTTGGAAGGAATCACAAATATAGTTCCAGCTCTCGGGGGTGTGAACATCAAACAACTGCTAAACGAGGCAACTGATGAAATGGGAGGGAAGCTGCTGCTAGATTTTAATGACACAATTGGTGATAGGATTCAAGTTTTTCTAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

509

Amino Acids

54.86

Weight (kDa)

5.86

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEP_mutase PF13714 99 - 337 1e-45 Phosphoenolpyruvate phosphomutase
ICL PF00463 163 - 250 1.9e-13 Isocitrate lyase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1241
AccB7I CCANNNNNTGG 1 cut(s) 1295
AccBSI CCGCTC 1 cut(s) 699
AccI GTMKAC 1 cut(s) 1164
AccIII TCCGGA 1 cut(s) 233
AclWI GGATC 3 cut(s) 462, 1217, 1307
AcoI YGGCCR 1 cut(s) 267
AfaI GTAC 1 cut(s) 1256
AfiI CCNNNNNNNGG 6 cut(s) 425, 497, 975, 1040, 1295, 1412
AflIII ACRYGT 1 cut(s) 1251
AjiI CACGTC 1 cut(s) 1252
AjnI CCWGG 4 cut(s) 298, 309, 1039, 1280
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 7 cut(s) 55, 234, 267, 604, 1019, 1175, 1311
AlwI GGATC 3 cut(s) 462, 1217, 1307
AlwNI CAGNNNCTG 1 cut(s) 36
Ama87I CYCGRG 2 cut(s) 257, 1412
Aor13HI TCCGGA 1 cut(s) 233
AoxI GGCC 5 cut(s) 207, 252, 267, 312, 1024
ApeKI GCWGC 9 cut(s) 39, 42, 224, 372, 401, 674, 1125, 1471, 1474
Asp700I GAANNNNTTC 2 cut(s) 730, 845
AspS9I GGNCC 5 cut(s) 208, 253, 313, 1179, 1286
AsuHPI GGTGA 3 cut(s) 512, 518, 1511
AsuII TTCGAA 1 cut(s) 1059
AvaI CYCGRG 2 cut(s) 257, 1412
AvaII GGWCC 2 cut(s) 1179, 1286
BanII GRGCYC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 9 cut(s) 51, 54, 236, 359, 388, 686, 1137, 1458, 1461
BccI CCATC 5 cut(s) 497, 1060, 1184, 1268, 1334
BciT130I CCWGG 4 cut(s) 300, 311, 1041, 1282
BciVI GTATCC 1 cut(s) 548
BcoDI GTCTC 7 cut(s) 55, 234, 267, 604, 1019, 1175, 1311
BfaI CTAG 6 cut(s) 381, 405, 1079, 1185, 1478, 1520
BfmI CTRYAG 1 cut(s) 37
BfuI GTATCC 1 cut(s) 548
BglI GCCNNNNNGGC 1 cut(s) 203
BlpI GCTNAGC 1 cut(s) 26
Bme1390I CCNGG 4 cut(s) 300, 311, 1041, 1282
Bme18I GGWCC 2 cut(s) 1179, 1286
BmeT110I CYCGRG 2 cut(s) 257, 1412
BmgBI CACGTC 1 cut(s) 1252
BmgT120I GGNCC 5 cut(s) 208, 253, 313, 1179, 1286
BmiI GGNNCC 4 cut(s) 255, 315, 1279, 1287
BmrFI CCNGG 4 cut(s) 300, 311, 1041, 1282
BmsI GCATC 7 cut(s) 22, 107, 319, 673, 778, 1038, 1258
BplI GAGNNNNNCTC 2 cut(s) 686, 718
BpmI CTGGAG 3 cut(s) 311, 787, 1125
Bpu1102I GCTNAGC 1 cut(s) 26
Bpu14I TTCGAA 1 cut(s) 1059
BpuEI CTTGAG 2 cut(s) 950, 1203
BsaBI GATNNNNATC 1 cut(s) 1212
BsaI GGTCTC 3 cut(s) 604, 1019, 1311
BsaJI CCNNGG 2 cut(s) 299, 1281
BsaWI WCCGGW 1 cut(s) 233
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 435, 465
Bsc4I CCNNNNNNNGG 6 cut(s) 425, 497, 975, 1040, 1295, 1412
Bse1I ACTGG 3 cut(s) 1011, 1155, 1336
Bse3DI GCAATG 2 cut(s) 534, 999
Bse8I GATNNNNATC 1 cut(s) 1212
BseAI TCCGGA 1 cut(s) 233
BseBI CCWGG 4 cut(s) 300, 311, 1041, 1282
BseDI CCNNGG 2 cut(s) 299, 1281
BseGI GGATG 5 cut(s) 760, 940, 1029, 1052, 1345
BseJI GATNNNNATC 1 cut(s) 1212
BseLI CCNNNNNNNGG 6 cut(s) 425, 497, 975, 1040, 1295, 1412
BseMI GCAATG 2 cut(s) 534, 999
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 3 cut(s) 1011, 1155, 1336
BseRI GAGGAG 4 cut(s) 61, 252, 665, 1026
BseXI GCAGC 9 cut(s) 51, 54, 236, 359, 388, 686, 1137, 1458, 1461
BseYI CCCAGC 1 cut(s) 575
BsgI GTGCAG 1 cut(s) 816
BshFI GGCC 5 cut(s) 209, 254, 269, 314, 1026
BsiHKAI GWGCWC 1 cut(s) 279
BsiHKCI CYCGRG 2 cut(s) 257, 1412
BsiSI CCGG 2 cut(s) 234, 266
BslI CCNNNNNNNGG 6 cut(s) 425, 497, 975, 1040, 1295, 1412
BsmAI GTCTC 7 cut(s) 55, 234, 267, 604, 1019, 1175, 1311
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 5 cut(s) 209, 254, 269, 314, 1026
Bso31I GGTCTC 3 cut(s) 604, 1019, 1311
BsoBI CYCGRG 2 cut(s) 257, 1412
Bsp119I TTCGAA 1 cut(s) 1059
Bsp1286I GDGCHC 1 cut(s) 279
Bsp13I TCCGGA 1 cut(s) 233
Bsp1407I TGTACA 1 cut(s) 1254
Bsp143I GATC 6 cut(s) 454, 592, 770, 1207, 1222, 1299
Bsp1720I GCTNAGC 1 cut(s) 26
BspANI GGCC 5 cut(s) 209, 254, 269, 314, 1026
BspCNI CTCAG 1 cut(s) 327
BspEI TCCGGA 1 cut(s) 233
BspLI GGNNCC 4 cut(s) 255, 315, 1279, 1287
BspMAI CTGCAG 1 cut(s) 41
BspPI GGATC 3 cut(s) 462, 1217, 1307
BspT104I TTCGAA 1 cut(s) 1059
BspTNI GGTCTC 3 cut(s) 604, 1019, 1311
BsrBI CCGCTC 1 cut(s) 699
BsrDI GCAATG 2 cut(s) 534, 999
BsrGI TGTACA 1 cut(s) 1254
BsrI ACTGG 3 cut(s) 1011, 1155, 1336
BssECI CCNNGG 2 cut(s) 299, 1281
BssMI GATC 6 cut(s) 454, 592, 770, 1207, 1222, 1299
BssNAI GTATAC 1 cut(s) 1165
Bst1107I GTATAC 1 cut(s) 1165
Bst2UI CCWGG 4 cut(s) 300, 311, 1041, 1282
Bst4CI ACNGT 5 cut(s) 49, 547, 1091, 1113, 1169
Bst6I CTCTTC 4 cut(s) 60, 533, 828, 1056
BstAPI GCANNNNNTGC 1 cut(s) 36
BstAUI TGTACA 1 cut(s) 1254
BstBI TTCGAA 1 cut(s) 1059
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 2 cut(s) 26, 335
BstF5I GGATG 5 cut(s) 760, 940, 1029, 1052, 1345
BstKTI GATC 6 cut(s) 457, 595, 773, 1210, 1225, 1302
BstMAI GTCTC 7 cut(s) 55, 234, 267, 604, 1019, 1175, 1311
BstMBI GATC 6 cut(s) 454, 592, 770, 1207, 1222, 1299
BstMWI GCNNNNNNNGC 8 cut(s) 36, 203, 338, 369, 381, 410, 572, 683
BstNI CCWGG 4 cut(s) 300, 311, 1041, 1282
BstSCI CCNGG 4 cut(s) 298, 309, 1039, 1280
BstSFI CTRYAG 1 cut(s) 37
BstV1I GCAGC 9 cut(s) 51, 54, 236, 359, 388, 686, 1137, 1458, 1461
BstX2I RGATCY 2 cut(s) 1222, 1299
BstXI CCANNNNNNTGG 1 cut(s) 349
BstYI RGATCY 2 cut(s) 1222, 1299
BstZ17I GTATAC 1 cut(s) 1165
BsuI GTATCC 1 cut(s) 548
BsuRI GGCC 5 cut(s) 209, 254, 269, 314, 1026
BtrI CACGTC 1 cut(s) 1252
BtsCI GGATG 5 cut(s) 760, 940, 1029, 1052, 1345
BtsI GCAGTG 3 cut(s) 161, 192, 750
BtsIMutI CAGTG 6 cut(s) 45, 161, 192, 374, 750, 1004
Cac8I GCNNGC 1 cut(s) 361
CaiI CAGNNNCTG 1 cut(s) 36
Cfr13I GGNCC 5 cut(s) 208, 253, 313, 1179, 1286
CseI GACGC 1 cut(s) 824
Csp6I GTAC 1 cut(s) 1255
CviQI GTAC 1 cut(s) 1255
DdeI CTNAG 2 cut(s) 26, 335
DpnI GATC 6 cut(s) 456, 594, 772, 1209, 1224, 1301
DpnII GATC 6 cut(s) 454, 592, 770, 1207, 1222, 1299
EaeI YGGCCR 1 cut(s) 267
Eam1104I CTCTTC 4 cut(s) 60, 533, 828, 1056
EarI CTCTTC 4 cut(s) 60, 533, 828, 1056
EciI GGCGGA 1 cut(s) 64
Ecl136II GAGCTC 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 279
Eco31I GGTCTC 3 cut(s) 604, 1019, 1311
Eco32I GATATC 1 cut(s) 858
Eco47I GGWCC 2 cut(s) 1179, 1286
Eco53kI GAGCTC 1 cut(s) 277
Eco88I CYCGRG 2 cut(s) 257, 1412
EcoICRI GAGCTC 1 cut(s) 277
EcoO109I RGGNCCY 1 cut(s) 313
EcoRII CCWGG 4 cut(s) 298, 309, 1039, 1280
EcoRV GATATC 1 cut(s) 858
EcoT38I GRGCYC 1 cut(s) 279
FblI GTMKAC 1 cut(s) 1164
FokI GGATG 5 cut(s) 767, 947, 1016, 1039, 1352
FriOI GRGCYC 1 cut(s) 279
FspBI CTAG 6 cut(s) 381, 405, 1079, 1185, 1478, 1520
GsaI CCCAGC 1 cut(s) 579
GsuI CTGGAG 3 cut(s) 311, 787, 1125
HaeIII GGCC 5 cut(s) 209, 254, 269, 314, 1026
HapII CCGG 2 cut(s) 234, 266
HgaI GACGC 1 cut(s) 824
HindIII AAGCTT 2 cut(s) 344, 609
HpaII CCGG 2 cut(s) 234, 266
HphI GGTGA 3 cut(s) 512, 518, 1511
Hpy166II GTNNAC 3 cut(s) 1165, 1255, 1423
Hpy188I TCNGA 7 cut(s) 285, 336, 690, 706, 1212, 1311, 1365
Hpy188III TCNNGA 7 cut(s) 234, 290, 645, 766, 1142, 1220, 1520
Hpy8I GTNNAC 3 cut(s) 1165, 1255, 1423
Hpy99I CGWCG 1 cut(s) 285
HpyAV CCTTC 6 cut(s) 624, 835, 887, 1066, 1329, 1379
HpyCH4III ACNGT 5 cut(s) 49, 547, 1091, 1113, 1169
HpyCH4IV ACGT 2 cut(s) 1251, 1313
HpyCH4V TGCA 5 cut(s) 39, 527, 797, 997, 1271
HpyF10VI GCNNNNNNNGC 8 cut(s) 36, 203, 338, 369, 381, 410, 572, 683
HpyF3I CTNAG 2 cut(s) 26, 335
HpySE526I ACGT 2 cut(s) 1251, 1313
Kpn2I TCCGGA 1 cut(s) 233
Kzo9I GATC 6 cut(s) 454, 592, 770, 1207, 1222, 1299
LmnI GCTCC 1 cut(s) 282
Lsp1109I GCAGC 9 cut(s) 51, 54, 236, 359, 388, 686, 1137, 1458, 1461
LweI GCATC 7 cut(s) 22, 107, 319, 673, 778, 1038, 1258
MaeI CTAG 6 cut(s) 381, 405, 1079, 1185, 1478, 1520
MaeII ACGT 2 cut(s) 1251, 1313
MalI GATC 6 cut(s) 456, 594, 772, 1209, 1224, 1301
MbiI CCGCTC 1 cut(s) 699
MboI GATC 6 cut(s) 454, 592, 770, 1207, 1222, 1299
MboII GAAGA 8 cut(s) 47, 93, 550, 602, 845, 1073, 1112, 1115
MfeI CAATTG 1 cut(s) 1494
MflI RGATCY 2 cut(s) 1222, 1299
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 5 cut(s) 248, 468, 486, 948, 1494
MlyI GAGTC 1 cut(s) 269
MmeI TCCRAC 1 cut(s) 263
MroI TCCGGA 1 cut(s) 233
MroXI GAANNNNTTC 2 cut(s) 730, 845
MseI TTAA 3 cut(s) 561, 1068, 1485
MspA1I CMGCKG 1 cut(s) 677
MspI CCGG 2 cut(s) 234, 266
MspR9I CCNGG 4 cut(s) 300, 311, 1041, 1282
MunI CAATTG 1 cut(s) 1494
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 4 cut(s) 300, 311, 1041, 1282
MwoI GCNNNNNNNGC 8 cut(s) 36, 203, 338, 369, 381, 410, 572, 683
NdeII GATC 6 cut(s) 454, 592, 770, 1207, 1222, 1299
NlaIV GGNNCC 4 cut(s) 255, 315, 1279, 1287
NspV TTCGAA 1 cut(s) 1059
PctI GAATGC 1 cut(s) 529
PdmI GAANNNNTTC 2 cut(s) 730, 845
PfeI GAWTC 9 cut(s) 4, 286, 731, 1075, 1213, 1366, 1377, 1389, 1507
PflFI GACNNNGTC 1 cut(s) 710
PflMI CCANNNNNTGG 1 cut(s) 1295
PfoI TCCNGGA 1 cut(s) 1039
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
PsiI TTATAA 1 cut(s) 1241
Psp124BI GAGCTC 1 cut(s) 279
Psp6I CCWGG 4 cut(s) 298, 309, 1039, 1280
PspFI CCCAGC 1 cut(s) 575
PspGI CCWGG 4 cut(s) 298, 309, 1039, 1280
PspN4I GGNNCC 4 cut(s) 255, 315, 1279, 1287
PspPI GGNCC 5 cut(s) 208, 253, 313, 1179, 1286
PstI CTGCAG 1 cut(s) 41
PstNI CAGNNNCTG 1 cut(s) 36
PsuI RGATCY 2 cut(s) 1222, 1299
PsyI GACNNNGTC 1 cut(s) 710
PvuII CAGCTG 1 cut(s) 677
RsaI GTAC 1 cut(s) 1256
RsaNI GTAC 1 cut(s) 1255
SacI GAGCTC 1 cut(s) 279
SaqAI TTAA 3 cut(s) 561, 1068, 1485
Sau3AI GATC 6 cut(s) 454, 592, 770, 1207, 1222, 1299
Sau96I GGNCC 5 cut(s) 208, 253, 313, 1179, 1286
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 4 cut(s) 300, 311, 1041, 1282
SduI GDGCHC 1 cut(s) 279
SfaNI GCATC 7 cut(s) 22, 107, 319, 673, 778, 1038, 1258
SfcI CTRYAG 1 cut(s) 37
SfuI TTCGAA 1 cut(s) 1059
SinI GGWCC 2 cut(s) 1179, 1286
SmlI CTYRAG 2 cut(s) 929, 1218
SmoI CTYRAG 2 cut(s) 929, 1218
Sse9I AATT 5 cut(s) 248, 468, 486, 948, 1494
SspMI CTAG 6 cut(s) 381, 405, 1079, 1185, 1478, 1520
SstI GAGCTC 1 cut(s) 279
StyD4I CCNGG 4 cut(s) 298, 309, 1039, 1280
TaaI ACNGT 5 cut(s) 49, 547, 1091, 1113, 1169
TaiI ACGT 2 cut(s) 1254, 1316
TaqI TCGA 1 cut(s) 1059
TasI AATT 5 cut(s) 248, 468, 486, 948, 1494
TatI WGTACW 1 cut(s) 1254
TauI GCSGC 3 cut(s) 209, 702, 1029
TfiI GAWTC 9 cut(s) 4, 286, 731, 1075, 1213, 1366, 1377, 1389, 1507
Tru1I TTAA 3 cut(s) 561, 1068, 1485
Tru9I TTAA 3 cut(s) 561, 1068, 1485
TscAI CASTG 6 cut(s) 52, 168, 199, 374, 750, 1011
TseI GCWGC 9 cut(s) 39, 42, 224, 372, 401, 674, 1125, 1471, 1474
TspDTI ATGAA 7 cut(s) 17, 545, 771, 799, 854, 1113, 1470
TspGWI ACGGA 1 cut(s) 269
TspRI CASTG 6 cut(s) 52, 168, 199, 374, 750, 1011
Tth111I GACNNNGTC 1 cut(s) 710
Van91I CCANNNNNTGG 1 cut(s) 1295
VpaK11BI GGWCC 2 cut(s) 1179, 1286
XbaI TCTAGA 1 cut(s) 1519
XmiI GTMKAC 1 cut(s) 1164
XmnI GAANNNNTTC 2 cut(s) 730, 845
XspI CTAG 6 cut(s) 381, 405, 1079, 1185, 1478, 1520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.