Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004495

Physical Location & Seq

Genomic Coordinates Forward (+)

28796488 .. 28800562

Gene Structure 4075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG144800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAACGTCAAGAGAACTGTCAAGGGATTTATTAGAGCTGGCTTTGCTGGCATTCTGCTTGAAGATCAGGTGTCTCCAAAAGCCTGCGGTCATACACGAGGCAGGAAAGTGGTGTCAAGGGAGGAAGCTGTGATGCGGATAAAAGCAGCAGTTGATGCTCGGAGAGAGAGTGGTTCTGACATTGTAATTGTAGCACGATCTGATGCTCGTCAAGCAGTGTCTTTGGAAGAAGCACTTTGGAGGTCAAGGGCATTCGCTGATGCTGGAGCAGATGTTCTTTTCATTGATGCACTAGCCTCAAAAGAAGAAATGAAGGCTTTCTGTGGAGTATATCCCCTAGTTCCAAAAATGGCGAATATGCTTGAAGGAGGGGGGAAAACGCCAATACTCAATCCTCTTGAACTTGAGGAAGTTGGATACAAAATTGTGGTTTATCCACTTTCCTTGATTGGGGTATCTATTCAAGCAATGCAGGACGCACTAGCTGCTATCAGAGGAGGTCGTATCCCTCCACCTGGAAGCATGCCCTCTTTTGAAGAGCTTAAGGAGGTCCTAGGTTTCAACAGTTATTATGAAGAAGAAAAGCGGTATTATAGTAACAGCAGTCAGCTGTCTTCTGAAAGATTGGCCAGTAGTGGATACAGTCTTGAAGGGACATCTAAAAATGCAGAACCAAAAGATCAGAGTCCTCAAGATCCCATTGTTGAAGTTATAACACCTGAAGTGTACAATAACTATGGTGCAGATGGTTTCAAGGATTCATTTTCCGGGATCTGGTCTCGGAAATTGAGAATCAAAATAACTGGAAGAGATGGATTTGAGAAACTTGAAGTTAGAATTCCTGCTGGATTCTCGGACGGAATCACCAATATAGTTCCAGCTCTTAGGGGTGTAAACATCAAAGAATTGTTGAATGAGGCAGCTGATGAAATGGGAGGGAAGCAGCTGTTAGATTTTAATGACACAATGGGTGATAGAATTCAAGTTTTTCTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEP_mutase

Protein Analysis

332

Amino Acids

36.38

Weight (kDa)

5.36

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEP_mutase	PF13714	2 - 164	2.2e-25	Phosphoenolpyruvate phosphomutase
ICL	PF00463	5 - 74	3.7e-08	Isocitrate lyase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43180 AT2G43180 AT2G43180 AT2G43180
fragaria_vesca	FvH4_4g11620 FvH4_4g11620
malus_domestica	MD04G1031000.v1.1
prunus_persica	Prupe.1G182700_v2.0.a1 Prupe.1G182700_v2.0.a1 Prupe.1G182700_v2.0.a1
pyrus_communis	pycom04g02620
rosa_chinensis	RchiOBHm_Chr4g0408741 RchiOBHm_Chr4g0408751
rosa_laevigata	RLG00000008633 RLG00000008634
rosa_multiflora	Rmu_sc0001258.1_g000006 Rmu_sc0005878.1_g000017 Rmu_sc0007333.1_g000009
rosa_roxburghii	Rroxscaffold_5G00353090
rosa_rugosa	Rorug04G0087300
rosa_samantha	Rh1DG149900 Rh4AG151500 Rh4AG151600 Rh4BG148700 Rh4BG148800 Rh4CG159600 Rh4CG159800 Rh4DG144700 Rh4DG144800
rosa_wichuraiana	Rw0G015170 Rw4G012420 Rw4G012440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	713
AciI	CCGC	3 cut(s)	87, 136, 586
AclWI	GGATC	2 cut(s)	689, 779
AcoI	YGGCCR	1 cut(s)	627
AcsI	RAATTY	2 cut(s)	837, 978
AcuI	CTGAAG	1 cut(s)	741
AfaI	GTAC	1 cut(s)	728
AfiI	CCNNNNNNNGG	3 cut(s)	450, 515, 774
AflII	CTTAAG	1 cut(s)	542
AjnI	CCWGG	1 cut(s)	514
AloI	GAACNNNNNNTCC	2 cut(s)	258, 290
AluBI	AGCT	8 cut(s)	38, 128, 485, 541, 610, 881, 923, 946
AluI	AGCT	8 cut(s)	38, 128, 485, 541, 610, 881, 923, 946
Alw26I	GTCTC	2 cut(s)	78, 783
AlwI	GGATC	2 cut(s)	689, 779
AoxI	GGCC	1 cut(s)	627
ApeKI	GCWGC	4 cut(s)	146, 485, 920, 943
ApoI	RAATTY	2 cut(s)	837, 978
Asp700I	GAANNNNTTC	1 cut(s)	317
AspA2I	CCTAGG	1 cut(s)	553
AspS9I	GGNCC	1 cut(s)	550
AsuC2I	CCSGG	1 cut(s)	769
AsuHPI	GGTGA	2 cut(s)	856, 983
AvaII	GGWCC	1 cut(s)	550
AvrII	CCTAGG	1 cut(s)	553
BalI	TGGCCA	1 cut(s)	629
BauI	CACGAG	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	606
BbvI	GCAGC	4 cut(s)	158, 472, 932, 955
BccI	CCATC	2 cut(s)	740, 806
BciT130I	CCWGG	1 cut(s)	516
BciVI	GTATCC	3 cut(s)	410, 515, 632
BcnI	CCSGG	1 cut(s)	769
BcoDI	GTCTC	2 cut(s)	78, 783
BfaI	CTAG	5 cut(s)	293, 338, 482, 554, 992
BfrI	CTTAAG	1 cut(s)	542
BfuI	GTATCC	3 cut(s)	410, 515, 632
BisI	GCNGC	4 cut(s)	147, 486, 921, 944
BlnI	CCTAGG	1 cut(s)	553
BlsI	GCNGC	4 cut(s)	148, 487, 922, 945
Bme1390I	CCNGG	2 cut(s)	516, 769
Bme18I	GGWCC	1 cut(s)	550
BmgT120I	GGNCC	1 cut(s)	550
BmrFI	CCNGG	2 cut(s)	516, 769
BmsI	GCATC	5 cut(s)	123, 145, 193, 250, 277
BpiI	GAAGAC	1 cut(s)	606
BpmI	CTGGAG	1 cut(s)	285
BpuEI	CTTGAG	2 cut(s)	425, 675
BpuMI	CCSGG	1 cut(s)	769
BsaI	GGTCTC	1 cut(s)	783
BsaJI	CCNNGG	1 cut(s)	553
BsaXI	ACNNNNNCTCC	4 cut(s)	154, 184, 258, 288
Bsc4I	CCNNNNNNNGG	3 cut(s)	450, 515, 774
Bse1I	ACTGG	2 cut(s)	630, 808
Bse3DI	GCAATG	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	516
BseDI	CCNNGG	1 cut(s)	553
BseLI	CCNNNNNNNGG	3 cut(s)	450, 515, 774
BseMI	GCAATG	1 cut(s)	474
BseNI	ACTGG	2 cut(s)	630, 808
BseRI	GAGGAG	1 cut(s)	510
BseXI	GCAGC	4 cut(s)	158, 472, 932, 955
BsgI	GTGCAG	1 cut(s)	762
BshFI	GGCC	1 cut(s)	629
BsiSI	CCGG	1 cut(s)	768
BslFI	GGGAC	1 cut(s)	667
BslI	CCNNNNNNNGG	3 cut(s)	450, 515, 774
BsmAI	GTCTC	2 cut(s)	78, 783
BsmFI	GGGAC	1 cut(s)	667
BsmI	GAATGC	2 cut(s)	51, 251
BsnI	GGCC	1 cut(s)	629
Bso31I	GGTCTC	1 cut(s)	783
Bsp1407I	TGTACA	1 cut(s)	726
Bsp143I	GATC	5 cut(s)	64, 197, 679, 694, 771
BspACI	CCGC	3 cut(s)	87, 136, 586
BspANI	GGCC	1 cut(s)	629
BspPI	GGATC	2 cut(s)	689, 779
BspQI	GCTCTTC	1 cut(s)	531
BspTI	CTTAAG	1 cut(s)	542
BspTNI	GGTCTC	1 cut(s)	783
BsrDI	GCAATG	1 cut(s)	474
BsrGI	TGTACA	1 cut(s)	726
BsrI	ACTGG	2 cut(s)	630, 808
BssECI	CCNNGG	1 cut(s)	553
BssMI	GATC	5 cut(s)	64, 197, 679, 694, 771
BssSI	CACGAG	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	553
Bst2BI	CACGAG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	3 cut(s)	19, 566, 644
Bst6I	CTCTTC	2 cut(s)	531, 802
BstAFI	CTTAAG	1 cut(s)	542
BstAPI	GCANNNNNTGC	2 cut(s)	155, 485
BstAUI	TGTACA	1 cut(s)	726
BstC8I	GCNNGC	4 cut(s)	40, 49, 85, 524
BstDEI	CTNAG	1 cut(s)	884
BstKTI	GATC	5 cut(s)	67, 200, 682, 697, 774
BstMAI	GTCTC	2 cut(s)	78, 783
BstMBI	GATC	5 cut(s)	64, 197, 679, 694, 771
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 48, 155, 212, 485
BstNI	CCWGG	1 cut(s)	516
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	2 cut(s)	514, 767
BstV1I	GCAGC	4 cut(s)	158, 472, 932, 955
BstV2I	GAAGAC	1 cut(s)	606
BstX2I	RGATCY	2 cut(s)	694, 771
BstYI	RGATCY	2 cut(s)	694, 771
BsuI	GTATCC	3 cut(s)	410, 515, 632
BsuRI	GGCC	1 cut(s)	629
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	4 cut(s)	40, 49, 85, 524
Cfr13I	GGNCC	1 cut(s)	550
CseI	GACGC	1 cut(s)	485
Csp6I	GTAC	1 cut(s)	727
CspCI	CAANNNNNGTGG	2 cut(s)	426, 461
CviAII	CATG	1 cut(s)	523
CviQI	GTAC	1 cut(s)	727
DdeI	CTNAG	1 cut(s)	884
DpnI	GATC	5 cut(s)	66, 199, 681, 696, 773
DpnII	GATC	5 cut(s)	64, 197, 679, 694, 771
EaeI	YGGCCR	1 cut(s)	627
Eam1104I	CTCTTC	2 cut(s)	531, 802
EarI	CTCTTC	2 cut(s)	531, 802
Eco130I	CCWWGG	1 cut(s)	553
Eco31I	GGTCTC	1 cut(s)	783
Eco47I	GGWCC	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	741
EcoO109I	RGGNCCY	1 cut(s)	550
EcoRI	GAATTC	2 cut(s)	837, 978
EcoRII	CCWGG	1 cut(s)	514
EcoT14I	CCWWGG	1 cut(s)	553
ErhI	CCWWGG	1 cut(s)	553
FaeI	CATG	1 cut(s)	526
FaiI	YATR	9 cut(s)	93, 331, 359, 524, 573, 594, 713, 738, 872
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FaqI	GGGAC	1 cut(s)	667
FatI	CATG	1 cut(s)	522
Fnu4HI	GCNGC	4 cut(s)	147, 486, 921, 944
Fsp4HI	GCNGC	4 cut(s)	147, 486, 921, 944
FspBI	CTAG	5 cut(s)	293, 338, 482, 554, 992
GluI	GCNGC	4 cut(s)	147, 486, 921, 944
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	629
HapII	CCGG	1 cut(s)	768
HgaI	GACGC	1 cut(s)	485
Hin1II	CATG	1 cut(s)	526
HinfI	GANTC	5 cut(s)	685, 758, 792, 849, 861
HpaII	CCGG	1 cut(s)	768
HphI	GGTGA	2 cut(s)	856, 983
Hpy166II	GTNNAC	2 cut(s)	727, 895
Hpy188I	TCNGA	8 cut(s)	162, 178, 202, 494, 619, 684, 783, 856
Hpy188III	TCNNGA	5 cut(s)	10, 398, 647, 692, 992
Hpy8I	GTNNAC	2 cut(s)	727, 895
HpyAV	CCTTC	3 cut(s)	307, 359, 644
HpyCH4III	ACNGT	3 cut(s)	19, 566, 644
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	4 cut(s)	290, 472, 668, 743
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 48, 155, 212, 485
HpyF3I	CTNAG	1 cut(s)	884
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	526
Kzo9I	GATC	5 cut(s)	64, 197, 679, 694, 771
LguI	GCTCTTC	1 cut(s)	531
LmnI	GCTCC	1 cut(s)	266
Lsp1109I	GCAGC	4 cut(s)	158, 472, 932, 955
LweI	GCATC	5 cut(s)	123, 145, 193, 250, 277
MaeI	CTAG	5 cut(s)	293, 338, 482, 554, 992
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	5 cut(s)	66, 199, 681, 696, 773
MboI	GATC	5 cut(s)	64, 197, 679, 694, 771
MboII	GAAGA	8 cut(s)	74, 239, 317, 548, 587, 590, 606, 819
MflI	RGATCY	2 cut(s)	694, 771
MlsI	TGGCCA	1 cut(s)	629
MluCI	AATT	6 cut(s)	186, 423, 785, 837, 905, 978
MluNI	TGGCCA	1 cut(s)	629
MlyI	GAGTC	1 cut(s)	694
MmeI	TCCRAC	1 cut(s)	394
Mox20I	TGGCCA	1 cut(s)	629
MroXI	GAANNNNTTC	1 cut(s)	317
MscI	TGGCCA	1 cut(s)	629
MseI	TTAA	2 cut(s)	543, 957
Msp20I	TGGCCA	1 cut(s)	629
MspA1I	CMGCKG	3 cut(s)	610, 923, 946
MspCI	CTTAAG	1 cut(s)	542
MspI	CCGG	1 cut(s)	768
MspR9I	CCNGG	2 cut(s)	516, 769
Mva1269I	GAATGC	2 cut(s)	51, 251
MvaI	CCWGG	1 cut(s)	516
MwoI	GCNNNNNNNGC	5 cut(s)	44, 48, 155, 212, 485
NciI	CCSGG	1 cut(s)	769
NdeII	GATC	5 cut(s)	64, 197, 679, 694, 771
NlaIII	CATG	1 cut(s)	526
NspI	RCATGY	1 cut(s)	526
PaeI	GCATGC	1 cut(s)	526
PciSI	GCTCTTC	1 cut(s)	531
PctI	GAATGC	2 cut(s)	51, 251
PdmI	GAANNNNTTC	1 cut(s)	317
PfeI	GAWTC	4 cut(s)	758, 792, 849, 861
PfoI	TCCNGGA	1 cut(s)	767
PkrI	GCNGC	4 cut(s)	148, 487, 922, 945
PleI	GAGTC	1 cut(s)	693
PpsI	GAGTC	1 cut(s)	693
PpuMI	RGGWCCY	1 cut(s)	550
PsiI	TTATAA	1 cut(s)	713
Psp5II	RGGWCCY	1 cut(s)	550
Psp6I	CCWGG	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	514
PspPI	GGNCC	1 cut(s)	550
PspPPI	RGGWCCY	1 cut(s)	550
PsuI	RGATCY	2 cut(s)	694, 771
PvuII	CAGCTG	3 cut(s)	610, 923, 946
RsaI	GTAC	1 cut(s)	728
RsaNI	GTAC	1 cut(s)	727
SapI	GCTCTTC	1 cut(s)	531
SaqAI	TTAA	2 cut(s)	543, 957
SatI	GCNGC	4 cut(s)	147, 486, 921, 944
Sau3AI	GATC	5 cut(s)	64, 197, 679, 694, 771
Sau96I	GGNCC	1 cut(s)	550
SchI	GAGTC	1 cut(s)	694
ScrFI	CCNGG	2 cut(s)	516, 769
SfaNI	GCATC	5 cut(s)	123, 145, 193, 250, 277
SinI	GGWCC	1 cut(s)	550
SmlI	CTYRAG	3 cut(s)	404, 542, 690
SmoI	CTYRAG	3 cut(s)	404, 542, 690
SphI	GCATGC	1 cut(s)	526
Sse9I	AATT	6 cut(s)	186, 423, 785, 837, 905, 978
SsiI	CCGC	3 cut(s)	87, 136, 586
SspMI	CTAG	5 cut(s)	293, 338, 482, 554, 992
StyD4I	CCNGG	2 cut(s)	514, 767
StyI	CCWWGG	1 cut(s)	553
TaaI	ACNGT	3 cut(s)	19, 566, 644
TaiI	ACGT	1 cut(s)	9
TasI	AATT	6 cut(s)	186, 423, 785, 837, 905, 978
TatI	WGTACW	1 cut(s)	726
TfiI	GAWTC	4 cut(s)	758, 792, 849, 861
Tru1I	TTAA	2 cut(s)	543, 957
Tru9I	TTAA	2 cut(s)	543, 957
TscAI	CASTG	1 cut(s)	222
TseI	GCWGC	4 cut(s)	146, 485, 920, 943
TspDTI	ATGAA	6 cut(s)	17, 271, 326, 588, 750, 942
TspGWI	ACGGA	1 cut(s)	873
TspRI	CASTG	1 cut(s)	222
Vha464I	CTTAAG	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	550
XapI	RAATTY	2 cut(s)	837, 978
XbaI	TCTAGA	1 cut(s)	991
XceI	RCATGY	1 cut(s)	526
XmaJI	CCTAGG	1 cut(s)	553
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	5 cut(s)	293, 338, 482, 554, 992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.