Rorug04G0087300

Phosphoenolpyruvate phosphomutase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004495
Physical Location & Seq
Reverse (-)
13531453 .. 13532217
765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0087300.1

Sequence Viewer

Length: 660 bp
ATGGCGCAGACTACTATCGGTGCTATGGCTGCTCATAACCCCTCTGATTCTGCAAGGGTGACGTTGGGCGCGGAGGGGACGGCAGCGCTGCAGGACAACCATTGGTATATGGTTGGGCGTCTGCTTGGGCTAAAGGCTCGATTCCTCGGTTTCAAAGGAACCATTCCTTCGATCTGGCGAATTAAATCGGGACTCTCTGCCCATGAGGCCCGAGATCGTTTCCTGTTTCAGTTCAACCATGAAGCTTATCGCAATAGGGCATTTCCTAGAGGACTGTGGTTCTACAGGAACACGATGCTGGTGGTGTGTAAGTATGATGGGGTTGGCTCGGTGGAGACAGTCCCTTTGTGGAAGATGGAGATCTGGGTTGTGGTCACGGGCTTGCCGGTGGTGCTTCGTAACAAGGCAGCCCTTAACCTGATAGGATCTGTTGTTGGTCAGGTAATTCGATTTGATCAAACGGAGCTTCGACGAAAGGAGGAGGAACAGAGAATCCGGCTGGTGTTAGACACACGTCGGAGGCATGATGAGACGGGTTGCGACGGTTATTTGGTGAAAGAGAAGGAAGAACTCCAAAATGGGCCACCGAAAGCTGCGATGGCCGGTCTGTCGCTGGAAATGGGCGGCTTAGCTTCAGGACCAATTCCTTTGGTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PEP_mutase

Protein Analysis

219

Amino Acids

24.51

Weight (kDa)

9.48

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 31 - 105 1.3e-07 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 71
AciI CCGC 2 cut(s) 71, 624
AclWI GGATC 1 cut(s) 433
AcoI YGGCCR 1 cut(s) 600
AcuI CTGAAG 1 cut(s) 618
AcyI GRCGYC 1 cut(s) 118
AfeI AGCGCT 1 cut(s) 87
AflIII ACRYGT 1 cut(s) 512
AgsI TTSAA 2 cut(s) 154, 235
AjiI CACGTC 1 cut(s) 515
AloI GAACNNNNNNTCC 2 cut(s) 477, 509
AluBI AGCT 4 cut(s) 245, 466, 593, 632
AluI AGCT 4 cut(s) 245, 466, 593, 632
Alw26I GTCTC 2 cut(s) 329, 524
AlwI GGATC 1 cut(s) 433
Ama87I CYCGRG 1 cut(s) 210
Aor51HI AGCGCT 1 cut(s) 87
AoxI GGCC 3 cut(s) 207, 581, 600
ApeKI GCWGC 5 cut(s) 29, 83, 88, 407, 593
ArsI GACNNNNNNTTYG 2 cut(s) 328, 360
AspLEI GCGC 3 cut(s) 7, 71, 88
AspS9I GGNCC 3 cut(s) 208, 581, 638
AsuHPI GGTGA 2 cut(s) 70, 565
AvaI CYCGRG 1 cut(s) 210
AvaII GGWCC 1 cut(s) 638
BbvI GCAGC 5 cut(s) 16, 75, 95, 419, 580
BccI CCATC 3 cut(s) 311, 349, 592
BceAI ACGGC 1 cut(s) 96
BclI TGATCA 1 cut(s) 454
BcoDI GTCTC 2 cut(s) 329, 524
BfaI CTAG 1 cut(s) 267
BfmI CTRYAG 2 cut(s) 89, 283
BfoI RGCGCY 1 cut(s) 89
BglI GCCNNNNNGGC 1 cut(s) 206
BglII AGATCT 1 cut(s) 360
BisI GCNGC 6 cut(s) 30, 84, 89, 408, 594, 625
BlpI GCTNAGC 1 cut(s) 628
BlsI GCNGC 6 cut(s) 31, 85, 90, 409, 595, 626
Bme18I GGWCC 1 cut(s) 638
BmeT110I CYCGRG 1 cut(s) 210
BmgBI CACGTC 1 cut(s) 515
BmgT120I GGNCC 3 cut(s) 208, 581, 638
BmiI GGNNCC 1 cut(s) 160
BmsI GCATC 1 cut(s) 285
BoxI GACNNNNGTC 1 cut(s) 513
Bpu1102I GCTNAGC 1 cut(s) 628
BsaBI GATNNNNATC 1 cut(s) 359
BsaHI GRCGYC 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 145
Bse118I RCCGGY 2 cut(s) 385, 602
Bse8I GATNNNNATC 1 cut(s) 359
BseDI CCNNGG 1 cut(s) 145
BseJI GATNNNNATC 1 cut(s) 359
BseRI GAGGAG 1 cut(s) 494
BseXI GCAGC 5 cut(s) 16, 75, 95, 419, 580
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 3 cut(s) 209, 583, 602
BsiHKCI CYCGRG 1 cut(s) 210
BsiSI CCGG 3 cut(s) 386, 496, 603
BslFI GGGAC 3 cut(s) 91, 204, 326
BsmAI GTCTC 2 cut(s) 329, 524
BsmBI CGTCTC 1 cut(s) 524
BsmFI GGGAC 3 cut(s) 91, 204, 326
BsnI GGCC 3 cut(s) 209, 583, 602
BsoBI CYCGRG 1 cut(s) 210
Bsp143I GATC 5 cut(s) 171, 214, 360, 425, 454
Bsp1720I GCTNAGC 1 cut(s) 628
BspACI CCGC 2 cut(s) 71, 624
BspANI GGCC 3 cut(s) 209, 583, 602
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 160
BspMAI CTGCAG 1 cut(s) 93
BspPI GGATC 1 cut(s) 433
BsrFI RCCGGY 2 cut(s) 385, 602
BssAI RCCGGY 2 cut(s) 385, 602
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 5 cut(s) 171, 214, 360, 425, 454
BssNI GRCGYC 1 cut(s) 118
Bst4CI ACNGT 3 cut(s) 276, 340, 545
BstACI GRCGYC 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 383
BstDEI CTNAG 1 cut(s) 628
BstFNI CGCG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 3 cut(s) 7, 71, 88
BstKTI GATC 5 cut(s) 174, 217, 363, 428, 457
BstMAI GTCTC 2 cut(s) 329, 524
BstMBI GATC 5 cut(s) 171, 214, 360, 425, 454
BstMWI GCNNNNNNNGC 4 cut(s) 29, 206, 391, 599
BstPAI GACNNNNGTC 1 cut(s) 513
BstSFI CTRYAG 2 cut(s) 89, 283
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 5 cut(s) 16, 75, 95, 419, 580
BstX2I RGATCY 2 cut(s) 360, 425
BstYI RGATCY 2 cut(s) 360, 425
BsuRI GGCC 3 cut(s) 209, 583, 602
BtgZI GCGATG 1 cut(s) 611
BtrI CACGTC 1 cut(s) 515
Cac8I GCNNGC 1 cut(s) 383
CfoI GCGC 3 cut(s) 7, 71, 88
Cfr10I RCCGGY 2 cut(s) 385, 602
Cfr13I GGNCC 3 cut(s) 208, 581, 638
CseI GACGC 1 cut(s) 107
CviAII CATG 3 cut(s) 203, 239, 524
DdeI CTNAG 1 cut(s) 628
DpnI GATC 5 cut(s) 173, 216, 362, 427, 456
DpnII GATC 5 cut(s) 171, 214, 360, 425, 454
EaeI YGGCCR 1 cut(s) 600
Eco47I GGWCC 1 cut(s) 638
Eco47III AGCGCT 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 618
Eco88I CYCGRG 1 cut(s) 210
Esp3I CGTCTC 1 cut(s) 524
FaeI CATG 3 cut(s) 206, 242, 527
FaiI YATR 8 cut(s) 26, 36, 108, 110, 204, 240, 315, 525
FaqI GGGAC 3 cut(s) 91, 204, 326
FatI CATG 3 cut(s) 202, 238, 523
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 6 cut(s) 30, 84, 89, 408, 594, 625
Fsp4HI GCNGC 6 cut(s) 30, 84, 89, 408, 594, 625
FspBI CTAG 1 cut(s) 267
GlaI GCGC 3 cut(s) 6, 70, 87
GluI GCNGC 6 cut(s) 30, 84, 89, 408, 594, 625
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 3 cut(s) 209, 583, 602
HapII CCGG 3 cut(s) 386, 496, 603
HgaI GACGC 1 cut(s) 107
HhaI GCGC 3 cut(s) 7, 71, 88
Hin1I GRCGYC 1 cut(s) 118
Hin1II CATG 3 cut(s) 206, 242, 527
Hin6I GCGC 3 cut(s) 5, 69, 86
HinP1I GCGC 3 cut(s) 5, 69, 86
HindIII AAGCTT 1 cut(s) 243
HinfI GANTC 4 cut(s) 47, 141, 192, 492
HpaII CCGG 3 cut(s) 386, 496, 603
HphI GGTGA 2 cut(s) 70, 565
Hpy188I TCNGA 2 cut(s) 46, 519
Hpy188III TCNNGA 2 cut(s) 189, 636
Hpy99I CGWCG 3 cut(s) 474, 519, 545
HpyAV CCTTC 2 cut(s) 177, 556
HpyCH4III ACNGT 3 cut(s) 276, 340, 545
HpyCH4IV ACGT 2 cut(s) 62, 514
HpyCH4V TGCA 2 cut(s) 53, 91
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 206, 391, 599
HpyF3I CTNAG 1 cut(s) 628
HpySE526I ACGT 2 cut(s) 62, 514
Hsp92I GRCGYC 1 cut(s) 118
Hsp92II CATG 3 cut(s) 206, 242, 527
HspAI GCGC 3 cut(s) 5, 69, 86
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 5 cut(s) 171, 214, 360, 425, 454
LmnI GCTCC 1 cut(s) 463
Lsp1109I GCAGC 5 cut(s) 16, 75, 95, 419, 580
LweI GCATC 1 cut(s) 285
MaeI CTAG 1 cut(s) 267
MaeII ACGT 2 cut(s) 62, 514
MaeIII GTNAC 3 cut(s) 58, 373, 398
MalI GATC 5 cut(s) 173, 216, 362, 427, 456
MboI GATC 5 cut(s) 171, 214, 360, 425, 454
MboII GAAGA 2 cut(s) 364, 578
MflI RGATCY 2 cut(s) 360, 425
MluCI AATT 3 cut(s) 180, 444, 642
MlyI GAGTC 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 497
MnlI CCTC 8 cut(s) 52, 67, 155, 199, 263, 472, 475, 513
MseI TTAA 2 cut(s) 183, 414
MspI CCGG 3 cut(s) 386, 496, 603
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 4 cut(s) 29, 206, 391, 599
NdeII GATC 5 cut(s) 171, 214, 360, 425, 454
NlaIII CATG 3 cut(s) 206, 242, 527
NlaIV GGNNCC 1 cut(s) 160
NmuCI GTSAC 2 cut(s) 58, 373
PfeI GAWTC 3 cut(s) 47, 141, 492
PkrI GCNGC 6 cut(s) 31, 85, 90, 409, 595, 626
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
PshAI GACNNNNGTC 1 cut(s) 513
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 3 cut(s) 208, 581, 638
PstI CTGCAG 1 cut(s) 93
PsuI RGATCY 2 cut(s) 360, 425
SaqAI TTAA 2 cut(s) 183, 414
SatI GCNGC 6 cut(s) 30, 84, 89, 408, 594, 625
Sau3AI GATC 5 cut(s) 171, 214, 360, 425, 454
Sau96I GGNCC 3 cut(s) 208, 581, 638
SchI GAGTC 1 cut(s) 186
SetI ASST 8 cut(s) 65, 247, 420, 444, 468, 517, 595, 634
SfaNI GCATC 1 cut(s) 285
SfcI CTRYAG 2 cut(s) 89, 283
SinI GGWCC 1 cut(s) 638
Sse9I AATT 3 cut(s) 180, 444, 642
SsiI CCGC 2 cut(s) 71, 624
SspMI CTAG 1 cut(s) 267
TaaI ACNGT 3 cut(s) 276, 340, 545
TaiI ACGT 2 cut(s) 65, 517
TaqI TCGA 4 cut(s) 139, 170, 448, 469
TasI AATT 3 cut(s) 180, 444, 642
TauI GCSGC 1 cut(s) 627
TfiI GAWTC 3 cut(s) 47, 141, 492
Tru1I TTAA 2 cut(s) 183, 414
Tru9I TTAA 2 cut(s) 183, 414
TseFI GTSAC 2 cut(s) 58, 373
TseI GCWGC 5 cut(s) 29, 83, 88, 407, 593
Tsp45I GTSAC 2 cut(s) 58, 373
TspDTI ATGAA 1 cut(s) 255
TspGWI ACGGA 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 638
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.