Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005913

Physical Location & Seq

Genomic Coordinates Reverse (-)

15731427 .. 15732365

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g12011.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGAGAAACCAATACTACTAGAAGTTTGTGCTAATTCCTCCGAGGCCTCGAGCATTATCTCAGCAGCCTCAGAGAAGAAGAAGAATACTATGAAGATGAAGGAGATCAACGTCGACGACGAATCCCAACAACCAGGAAAGCCAGAGGTACTGGTGGCAGCAGCCAATGTTGAACTTGCACTTTTCAAGGATAATCCACCGCCGGAGGAGGAGGCCTCGGAGGAGATCAATGGCAAGCGTGGTCAACAAAAGAAAGAAAAAGAAGAGACTAGGGTTTTCAAGTGTAACTTCTGTAACAGAAACTTCTCTACTTCTCAAGCCTTGGGAGGCCACCAAAATGCTCACAAACCAGAACGGCAGCTTGCGAAAAGGCGTAGCCAGGGACTGGATGCAGGTGGTGGAATCGGATTAGGGCAGTCTTATTATCCTTATAATTTCAGCCCTTATTCTTCATCTACTTTTTCTCCACACTACTCTCTTTATGGATCTAGGTCGACGTCGTCTCTTGGTGTTAGGTTGGATTCCATGATTCATAAGCCTGCTTATACCCCGTGGTACGACCGCCTTGGTGGCGGTGGTGGGTGGTCGAGGCCAGCCTCCTCAAGCCTCCTACAGAACCACAGTAACAATGATCACAGGCTCATCATCCAGCAGGGTCTTAAGAATAATATCAACACCAACGAATTAGGGCTTGGTGTACGAAAATTTAATGCTTCATCAAGACTGGAGGAGAGTAGTACTATTAGTACTGGTGCTTTTCGCAACATCGGCGGCGGTACTTGGAACCTAAACGCAATCAACAACAACAACAACAGCAACAACGAGCCGCCACAGACGCCGCCATTGAGCGGTAGTACTGATCTTCTGTCTCAAGTAGAGCGGCCTCCGAAGTGTGATAAGGATGGTGACAATGACATCGATTTGACGCTTAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009787 GO:0009788 GO:0009791 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

313

Amino Acids

34.14

Weight (kDa)

7.67

Isoelectric Point (pI)

58.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	92 - 117	5.9e-06	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005913)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12011 FvH4_7g04251
malus_domestica	MD07G1042100.v1.1
prunus_persica	Prupe.2G048100_v2.0.a1 Prupe.2G048400_v2.0.a1
pyrus_communis	pycom02g23410
rosa_chinensis	RchiOBHm_Chr1g0328791
rosa_laevigata	RLG00000008539 RLG00000029918
rosa_multiflora	Rmu_co8270465.1_g000001 Rmu_sc0000652.1_g000003 Rmu_sc0004241.1_g000001 Rmu_sc0013419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321370 Rroxscaffold_5G00354150
rosa_rugosa	Rorug01G0075900 Rorug04G0095500
rosa_samantha	Rh1AG094600 Rh1BG075500 Rh1CG091900 Rh1DG097900 Rh4AG157200 Rh4BG156700 Rh4CG167200 Rh4DG150900
rosa_wichuraiana	Rw1G007380 Rw4G012850 Rw4G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
AarI	CACCTGC	1 cut(s)	383
AatII	GACGTC	1 cut(s)	500
Acc36I	ACCTGC	1 cut(s)	383
AccB7I	CCANNNNNTGG	1 cut(s)	385
AccBSI	CCGCTC	2 cut(s)	849, 880
AccI	GTMKAC	2 cut(s)	114, 494
AciI	CCGC	9 cut(s)	200, 562, 573, 771, 774, 827, 839, 849, 880
AclWI	GGATC	1 cut(s)	493
AcsI	RAATTY	1 cut(s)	704
AcyI	GRCGYC	2 cut(s)	497, 836
AfaI	GTAC	7 cut(s)	150, 557, 699, 739, 748, 778, 856
AfiI	CCNNNNNNNGG	2 cut(s)	385, 848
AflII	CTTAAG	1 cut(s)	659
AgsI	TTSAA	3 cut(s)	173, 187, 280
AjnI	CCWGG	2 cut(s)	133, 378
AjuI	GAANNNNNNNTTGG	2 cut(s)	675, 707
AluBI	AGCT	1 cut(s)	361
AluI	AGCT	1 cut(s)	361
Alw26I	GTCTC	3 cut(s)	260, 507, 873
AlwI	GGATC	1 cut(s)	493
AlwNI	CAGNNNCTG	1 cut(s)	385
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	5 cut(s)	45, 213, 328, 590, 881
ApeKI	GCWGC	4 cut(s)	65, 158, 161, 358
ApoI	RAATTY	1 cut(s)	704
AsuHPI	GGTGA	1 cut(s)	917
AvaI	CYCGRG	1 cut(s)	49
BbvI	GCAGC	4 cut(s)	77, 170, 173, 370
BccI	CCATC	1 cut(s)	896
BceAI	ACGGC	1 cut(s)	371
BciT130I	CCWGG	2 cut(s)	135, 380
BclI	TGATCA	1 cut(s)	631
BcoDI	GTCTC	3 cut(s)	260, 507, 873
BfaI	CTAG	3 cut(s)	20, 270, 489
BfmI	CTRYAG	1 cut(s)	611
BfrI	CTTAAG	1 cut(s)	659
BfuAI	ACCTGC	1 cut(s)	383
BglI	GCCNNNNNGGC	1 cut(s)	570
BisI	GCNGC	8 cut(s)	66, 159, 162, 359, 772, 827, 839, 881
BlsI	GCNGC	8 cut(s)	67, 160, 163, 360, 773, 828, 840, 882
BmcAI	AGTACT	3 cut(s)	739, 748, 856
Bme1390I	CCNGG	2 cut(s)	135, 380
BmeT110I	CYCGRG	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	785
BmrFI	CCNGG	2 cut(s)	135, 380
BmsI	GCATC	1 cut(s)	379
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BpmI	CTGGAG	1 cut(s)	746
BpuEI	CTTGAG	3 cut(s)	300, 586, 855
Bsa29I	ATCGAT	1 cut(s)	918
BsaHI	GRCGYC	2 cut(s)	497, 836
BsaJI	CCNNGG	6 cut(s)	42, 216, 321, 379, 551, 565
BsaXI	ACNNNNNCTCC	2 cut(s)	448, 478
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 848
Bse1I	ACTGG	4 cut(s)	156, 390, 729, 754
BseBI	CCWGG	2 cut(s)	135, 380
BseCI	ATCGAT	1 cut(s)	918
BseDI	CCNNGG	6 cut(s)	42, 216, 321, 379, 551, 565
BseGI	GGATG	3 cut(s)	394, 645, 907
BseLI	CCNNNNNNNGG	2 cut(s)	385, 848
BseMII	CTCAG	2 cut(s)	75, 84
BseNI	ACTGG	4 cut(s)	156, 390, 729, 754
BseRI	GAGGAG	5 cut(s)	221, 224, 236, 589, 743
BseXI	GCAGC	4 cut(s)	77, 170, 173, 370
Bsh1285I	CGRYCG	1 cut(s)	562
BshFI	GGCC	5 cut(s)	47, 215, 330, 592, 883
BshVI	ATCGAT	1 cut(s)	918
BsiEI	CGRYCG	1 cut(s)	562
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	203
BslFI	GGGAC	1 cut(s)	396
BslI	CCNNNNNNNGG	2 cut(s)	385, 848
BsmAI	GTCTC	3 cut(s)	260, 507, 873
BsmBI	CGTCTC	1 cut(s)	507
BsmFI	GGGAC	1 cut(s)	396
BsnI	GGCC	5 cut(s)	47, 215, 330, 592, 883
BsoBI	CYCGRG	1 cut(s)	49
Bsp143I	GATC	5 cut(s)	105, 225, 485, 631, 859
BspACI	CCGC	9 cut(s)	200, 562, 573, 771, 774, 827, 839, 849, 880
BspANI	GGCC	5 cut(s)	47, 215, 330, 592, 883
BspCNI	CTCAG	2 cut(s)	74, 83
BspDI	ATCGAT	1 cut(s)	918
BspLI	GGNNCC	1 cut(s)	785
BspMI	ACCTGC	1 cut(s)	383
BspPI	GGATC	1 cut(s)	493
BspTI	CTTAAG	1 cut(s)	659
BsrBI	CCGCTC	2 cut(s)	849, 880
BsrI	ACTGG	4 cut(s)	156, 390, 729, 754
BssECI	CCNNGG	6 cut(s)	42, 216, 321, 379, 551, 565
BssMI	GATC	5 cut(s)	105, 225, 485, 631, 859
BssNI	GRCGYC	2 cut(s)	497, 836
BssT1I	CCWWGG	2 cut(s)	321, 565
Bst2UI	CCWGG	2 cut(s)	135, 380
Bst4CI	ACNGT	1 cut(s)	623
Bst6I	CTCTTC	1 cut(s)	258
BstACI	GRCGYC	2 cut(s)	497, 836
BstAFI	CTTAAG	1 cut(s)	659
BstC8I	GCNNGC	4 cut(s)	236, 363, 540, 594
BstDEI	CTNAG	2 cut(s)	61, 70
BstDSI	CCRYGG	1 cut(s)	551
BstF5I	GGATG	3 cut(s)	394, 645, 907
BstKTI	GATC	5 cut(s)	108, 228, 488, 634, 862
BstMAI	GTCTC	3 cut(s)	260, 507, 873
BstMBI	GATC	5 cut(s)	105, 225, 485, 631, 859
BstMCI	CGRYCG	1 cut(s)	562
BstMWI	GCNNNNNNNGC	3 cut(s)	570, 768, 835
BstNI	CCWGG	2 cut(s)	135, 380
BstSCI	CCNGG	2 cut(s)	133, 378
BstSFI	CTRYAG	1 cut(s)	611
BstV1I	GCAGC	4 cut(s)	77, 170, 173, 370
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
Bsu15I	ATCGAT	1 cut(s)	918
BsuRI	GGCC	5 cut(s)	47, 215, 330, 592, 883
BsuTUI	ATCGAT	1 cut(s)	918
BtgI	CCRYGG	1 cut(s)	551
BtsCI	GGATG	3 cut(s)	394, 645, 907
BveI	ACCTGC	1 cut(s)	383
Cac8I	GCNNGC	4 cut(s)	236, 363, 540, 594
CaiI	CAGNNNCTG	1 cut(s)	385
ClaI	ATCGAT	1 cut(s)	918
CseI	GACGC	2 cut(s)	844, 934
Csp6I	GTAC	7 cut(s)	149, 556, 698, 738, 747, 777, 855
CviAII	CATG	1 cut(s)	526
CviQI	GTAC	7 cut(s)	149, 556, 698, 738, 747, 777, 855
DdeI	CTNAG	2 cut(s)	61, 70
DpnI	GATC	5 cut(s)	107, 227, 487, 633, 861
DpnII	GATC	5 cut(s)	105, 225, 485, 631, 859
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco130I	CCWWGG	2 cut(s)	321, 565
Eco147I	AGGCCT	2 cut(s)	47, 215
Eco88I	CYCGRG	1 cut(s)	49
EcoRII	CCWGG	2 cut(s)	133, 378
EcoT14I	CCWWGG	2 cut(s)	321, 565
ErhI	CCWWGG	2 cut(s)	321, 565
Esp3I	CGTCTC	1 cut(s)	507
FaeI	CATG	1 cut(s)	529
FaiI	YATR	6 cut(s)	92, 432, 483, 527, 534, 546
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FaqI	GGGAC	1 cut(s)	396
FatI	CATG	1 cut(s)	525
FbaI	TGATCA	1 cut(s)	631
FblI	GTMKAC	2 cut(s)	114, 494
Fnu4HI	GCNGC	8 cut(s)	66, 159, 162, 359, 772, 827, 839, 881
FokI	GGATG	3 cut(s)	401, 632, 914
Fsp4HI	GCNGC	8 cut(s)	66, 159, 162, 359, 772, 827, 839, 881
FspBI	CTAG	3 cut(s)	20, 270, 489
GluI	GCNGC	8 cut(s)	66, 159, 162, 359, 772, 827, 839, 881
GsuI	CTGGAG	1 cut(s)	746
HaeIII	GGCC	5 cut(s)	47, 215, 330, 592, 883
HapII	CCGG	1 cut(s)	203
HgaI	GACGC	2 cut(s)	844, 934
Hin1I	GRCGYC	2 cut(s)	497, 836
Hin1II	CATG	1 cut(s)	529
HincII	GTYRAC	3 cut(s)	115, 245, 495
HindII	GTYRAC	3 cut(s)	115, 245, 495
HinfI	GANTC	4 cut(s)	122, 402, 521, 529
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	1 cut(s)	917
Hpy166II	GTNNAC	4 cut(s)	115, 245, 495, 698
Hpy188I	TCNGA	5 cut(s)	43, 73, 220, 407, 888
Hpy188III	TCNNGA	1 cut(s)	720
Hpy8I	GTNNAC	4 cut(s)	115, 245, 495, 698
Hpy99I	CGWCG	5 cut(s)	116, 119, 122, 499, 502
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	623
HpyCH4IV	ACGT	2 cut(s)	111, 497
HpyCH4V	TGCA	2 cut(s)	179, 392
HpyF10VI	GCNNNNNNNGC	3 cut(s)	570, 768, 835
HpyF3I	CTNAG	2 cut(s)	61, 70
HpySE526I	ACGT	2 cut(s)	111, 497
Hsp92I	GRCGYC	2 cut(s)	497, 836
Hsp92II	CATG	1 cut(s)	529
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	5 cut(s)	105, 225, 485, 631, 859
Lsp1109I	GCAGC	4 cut(s)	77, 170, 173, 370
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	3 cut(s)	20, 270, 489
MaeII	ACGT	2 cut(s)	111, 497
MaeIII	GTNAC	4 cut(s)	284, 293, 623, 905
MalI	GATC	5 cut(s)	107, 227, 487, 633, 861
MbiI	CCGCTC	2 cut(s)	849, 880
MboI	GATC	5 cut(s)	105, 225, 485, 631, 859
MboII	GAAGA	7 cut(s)	88, 91, 94, 106, 275, 441, 854
MflI	RGATCY	1 cut(s)	485
MluCI	AATT	4 cut(s)	34, 433, 683, 704
MmeI	TCCRAC	1 cut(s)	498
MseI	TTAA	3 cut(s)	660, 708, 930
MslI	CAYNNNNRTG	1 cut(s)	336
MspCI	CTTAAG	1 cut(s)	659
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	2 cut(s)	135, 380
MvaI	CCWGG	2 cut(s)	135, 380
MwoI	GCNNNNNNNGC	3 cut(s)	570, 768, 835
NdeII	GATC	5 cut(s)	105, 225, 485, 631, 859
NlaIII	CATG	1 cut(s)	529
NlaIV	GGNNCC	1 cut(s)	785
NmuCI	GTSAC	1 cut(s)	905
PaeR7I	CTCGAG	1 cut(s)	49
PaqCI	CACCTGC	1 cut(s)	383
PceI	AGGCCT	2 cut(s)	47, 215
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfeI	GAWTC	4 cut(s)	122, 402, 521, 529
PflFI	GACNNNGTC	1 cut(s)	499
PflMI	CCANNNNNTGG	1 cut(s)	385
PkrI	GCNGC	8 cut(s)	67, 160, 163, 360, 773, 828, 840, 882
PsiI	TTATAA	1 cut(s)	432
Psp6I	CCWGG	2 cut(s)	133, 378
PspGI	CCWGG	2 cut(s)	133, 378
PspN4I	GGNNCC	1 cut(s)	785
PspXI	VCTCGAGB	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	485
PsyI	GACNNNGTC	1 cut(s)	499
RsaI	GTAC	7 cut(s)	150, 557, 699, 739, 748, 778, 856
RsaNI	GTAC	7 cut(s)	149, 556, 698, 738, 747, 777, 855
RseI	CAYNNNNRTG	1 cut(s)	336
SalI	GTCGAC	2 cut(s)	113, 493
SaqAI	TTAA	3 cut(s)	660, 708, 930
SatI	GCNGC	8 cut(s)	66, 159, 162, 359, 772, 827, 839, 881
Sau3AI	GATC	5 cut(s)	105, 225, 485, 631, 859
ScaI	AGTACT	3 cut(s)	739, 748, 856
ScrFI	CCNGG	2 cut(s)	135, 380
SetI	ASST	8 cut(s)	114, 150, 363, 397, 494, 500, 518, 789
SfaNI	GCATC	1 cut(s)	379
SfcI	CTRYAG	1 cut(s)	611
Sfr274I	CTCGAG	1 cut(s)	49
SgrDI	CGTCGACG	1 cut(s)	113
SlaI	CTCGAG	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	5 cut(s)	49, 315, 601, 659, 870
SmoI	CTYRAG	5 cut(s)	49, 315, 601, 659, 870
Sse9I	AATT	4 cut(s)	34, 433, 683, 704
SseBI	AGGCCT	2 cut(s)	47, 215
SsiI	CCGC	9 cut(s)	200, 562, 573, 771, 774, 827, 839, 849, 880
SspMI	CTAG	3 cut(s)	20, 270, 489
StuI	AGGCCT	2 cut(s)	47, 215
StyD4I	CCNGG	2 cut(s)	133, 378
StyI	CCWWGG	2 cut(s)	321, 565
TaaI	ACNGT	1 cut(s)	623
TaiI	ACGT	2 cut(s)	114, 500
TaqI	TCGA	5 cut(s)	50, 114, 494, 587, 918
TasI	AATT	4 cut(s)	34, 433, 683, 704
TatI	WGTACW	3 cut(s)	737, 746, 854
TauI	GCSGC	4 cut(s)	774, 829, 841, 883
TfiI	GAWTC	4 cut(s)	122, 402, 521, 529
Tru1I	TTAA	3 cut(s)	660, 708, 930
Tru9I	TTAA	3 cut(s)	660, 708, 930
TseFI	GTSAC	1 cut(s)	905
TseI	GCWGC	4 cut(s)	65, 158, 161, 358
Tsp45I	GTSAC	1 cut(s)	905
TspDTI	ATGAA	5 cut(s)	107, 113, 441, 521, 705
Tth111I	GACNNNGTC	1 cut(s)	499
Van91I	CCANNNNNTGG	1 cut(s)	385
Vha464I	CTTAAG	1 cut(s)	659
XapI	RAATTY	1 cut(s)	704
XhoI	CTCGAG	1 cut(s)	49
XmiI	GTMKAC	2 cut(s)	114, 494
XspI	CTAG	3 cut(s)	20, 270, 489
ZraI	GACGTC	1 cut(s)	498
ZrmI	AGTACT	3 cut(s)	739, 748, 856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.