Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005913

Physical Location & Seq

Genomic Coordinates Reverse (-)

21512577 .. 21513605

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g23410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCAGAAGAATATCAAAGCCCTTTTGAAGCCTCTAACATCTCAGCCGCCTCAGATGGCACTCCACCACCAAAAAAAGATAGCCCTTCTCCTCTCCCTCCTCCTGACCTTCCAGACCAAAAAATGAAGATGAAAATGAAAGAAAAAGTCATTATCGATGATTCTGATGATGAACAACGCAAGCCTAAACAGCCATCCCCGGCAGCCGGATCATCATCATCACCAACACAAAATTCTCGTCCCTTGCTTGATCTGAAGCGTTCCAACAACGACCCTGGTCATGCGTCAGGGGCGTTGCCCTCGAAGGAACTCATTCTGTTCAACCCTCTGAACCAGGGTTCATCATCGAACCCCGGGGGATTAGGATTATTATCTCAACACAACGAGCCAAGAGACGAGAACCCGCGTGGTGATGATGGGAAAAAACCCCAAAGTAGGGTTTTCACATGCAACTTTTGCAAGAGAGATTTCTCTACTTCCCAAGCATTGGGAGGTCATCAAAACGCTCACAAACAAGAGCGTGCCTTGGCCAAAAAGCATCAAGGAGGAATAGGAATGGACCATAATTTCTTCGGACATTCCCATCCTTATTATAGCCCATATTCAAGTATCACTCAACACCCTCTCTATGGATCATATGGTAGATCTCTTGGGATTATGATGGACTCCATGATTCACAAGCCTTATCCATGGTCCTCCTCGACCTCCTGGTTTGGACGCTTTGGCCATGGTGTTGGTTCCGGGGGCTGGTCATCATCAAGGCCAGGGGACCTCATGAATAATTTTCAATCCTCCATTGATAGGCTCAACCTTGATGGCCTTCATGCTAATACTACTTCCAGTGAAACATTAGGCCTTCCAGGAAGCATCAGTGGTTCAAGGTATGTTCAGGAAATTGGATCTGCTCGCAATTTTGGTGGTTCAAACTTCGGAATCAACAGGCCAATCATTGGTGGTGATGTTCTCGGCCGTGAGCCTCCAAAACCCGATACAGATACTTCTGGACTTGATTTGTCTCTTAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009787 GO:0009788 GO:0009791 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

343

Amino Acids

36.91

Weight (kDa)

7.82

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005913)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12011 FvH4_7g04251
malus_domestica	MD07G1042100.v1.1
prunus_persica	Prupe.2G048100_v2.0.a1 Prupe.2G048400_v2.0.a1
pyrus_communis	pycom02g23410
rosa_chinensis	RchiOBHm_Chr1g0328791
rosa_laevigata	RLG00000008539 RLG00000029918
rosa_multiflora	Rmu_co8270465.1_g000001 Rmu_sc0000652.1_g000003 Rmu_sc0004241.1_g000001 Rmu_sc0013419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321370 Rroxscaffold_5G00354150
rosa_rugosa	Rorug01G0075900 Rorug04G0095500
rosa_samantha	Rh1AG094600 Rh1BG075500 Rh1CG091900 Rh1DG097900 Rh4AG157200 Rh4BG156700 Rh4CG167200 Rh4DG150900
rosa_wichuraiana	Rw1G007380 Rw4G012850 Rw4G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	487, 950
AccII	CGCG	1 cut(s)	406
AciI	CCGC	2 cut(s)	48, 404
AclWI	GGATC	3 cut(s)	217, 640, 907
AcoI	YGGCCR	3 cut(s)	528, 724, 967
AcsI	RAATTY	1 cut(s)	232
AcuI	CTGAAG	1 cut(s)	275
AfiI	CCNNNNNNNGG	8 cut(s)	206, 435, 436, 487, 629, 747, 801, 950
AflII	CTTAAG	1 cut(s)	1019
AgsI	TTSAA	6 cut(s)	29, 322, 606, 788, 879, 924
AjnI	CCWGG	5 cut(s)	274, 333, 707, 763, 859
AjuI	GAANNNNNNNTTGG	2 cut(s)	217, 249
AluBI	AGCT	1 cut(s)	1024
AluI	AGCT	1 cut(s)	1024
Alw26I	GTCTC	2 cut(s)	387, 1020
AlwI	GGATC	3 cut(s)	217, 640, 907
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	7 cut(s)	528, 724, 761, 817, 853, 941, 967
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	1 cut(s)	232
ArsI	GACNNNNNNTTYG	2 cut(s)	223, 255
Asp700I	GAANNNNTTC	1 cut(s)	312
AspS9I	GGNCC	3 cut(s)	559, 693, 769
AsuC2I	CCSGG	4 cut(s)	200, 354, 355, 742
AsuHPI	GGTGA	3 cut(s)	213, 422, 968
AvaI	CYCGRG	1 cut(s)	353
AvaII	GGWCC	3 cut(s)	559, 693, 769
BalI	TGGCCA	2 cut(s)	530, 726
BbvI	GCAGC	1 cut(s)	215
BccI	CCATC	6 cut(s)	50, 202, 410, 591, 655, 809
BceAI	ACGGC	1 cut(s)	954
BciT130I	CCWGG	5 cut(s)	276, 335, 709, 765, 861
BcnI	CCSGG	4 cut(s)	200, 354, 355, 742
BcoDI	GTCTC	2 cut(s)	387, 1020
BfrI	CTTAAG	1 cut(s)	1019
BglII	AGATCT	1 cut(s)	644
BisI	GCNGC	2 cut(s)	48, 204
BlsI	GCNGC	2 cut(s)	49, 205
Bme1390I	CCNGG	9 cut(s)	200, 276, 335, 354, 355, 709, 742, 765, 861
Bme18I	GGWCC	3 cut(s)	559, 693, 769
BmeT110I	CYCGRG	1 cut(s)	353
BmgT120I	GGNCC	3 cut(s)	559, 693, 769
BmiI	GGNNCC	2 cut(s)	739, 770
BmrFI	CCNGG	9 cut(s)	200, 276, 335, 354, 355, 709, 742, 765, 861
BmsI	GCATC	2 cut(s)	547, 876
BoxI	GACNNNNGTC	1 cut(s)	276
BpuMI	CCSGG	4 cut(s)	200, 354, 355, 742
Bsa29I	ATCGAT	1 cut(s)	156
BsaBI	GATNNNNATC	2 cut(s)	214, 370
Bsc4I	CCNNNNNNNGG	8 cut(s)	206, 435, 436, 487, 629, 747, 801, 950
Bse1I	ACTGG	1 cut(s)	840
Bse8I	GATNNNNATC	2 cut(s)	214, 370
BseBI	CCWGG	5 cut(s)	276, 335, 709, 765, 861
BseCI	ATCGAT	1 cut(s)	156
BseGI	GGATG	2 cut(s)	194, 583
BseJI	GATNNNNATC	2 cut(s)	214, 370
BseLI	CCNNNNNNNGG	8 cut(s)	206, 435, 436, 487, 629, 747, 801, 950
BseMII	CTCAG	2 cut(s)	57, 66
BseNI	ACTGG	1 cut(s)	840
BseRI	GAGGAG	3 cut(s)	81, 90, 688
BseX3I	CGGCCG	1 cut(s)	967
BseXI	GCAGC	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	406
Bsh1285I	CGRYCG	1 cut(s)	970
BshFI	GGCC	7 cut(s)	530, 726, 763, 819, 855, 943, 969
BshVI	ATCGAT	1 cut(s)	156
BsiEI	CGRYCG	1 cut(s)	970
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	4 cut(s)	200, 207, 354, 741
BslFI	GGGAC	2 cut(s)	225, 782
BslI	CCNNNNNNNGG	8 cut(s)	206, 435, 436, 487, 629, 747, 801, 950
BsmAI	GTCTC	2 cut(s)	387, 1020
BsmBI	CGTCTC	1 cut(s)	387
BsmFI	GGGAC	2 cut(s)	225, 782
BsnI	GGCC	7 cut(s)	530, 726, 763, 819, 855, 943, 969
BsoBI	CYCGRG	1 cut(s)	353
Bsp143I	GATC	5 cut(s)	209, 250, 632, 644, 899
Bsp19I	CCATGG	2 cut(s)	689, 727
BspACI	CCGC	2 cut(s)	48, 404
BspANI	GGCC	7 cut(s)	530, 726, 763, 819, 855, 943, 969
BspCNI	CTCAG	2 cut(s)	56, 65
BspDI	ATCGAT	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	406
BspHI	TCATGA	1 cut(s)	774
BspLI	GGNNCC	2 cut(s)	739, 770
BspPI	GGATC	3 cut(s)	217, 640, 907
BspTI	CTTAAG	1 cut(s)	1019
BsrI	ACTGG	1 cut(s)	840
BssMI	GATC	5 cut(s)	209, 250, 632, 644, 899
BssT1I	CCWWGG	3 cut(s)	525, 689, 727
Bst2UI	CCWGG	5 cut(s)	276, 335, 709, 765, 861
BstAFI	CTTAAG	1 cut(s)	1019
BstAPI	GCANNNNNTGC	1 cut(s)	456
BstC8I	GCNNGC	3 cut(s)	182, 522, 907
BstDEI	CTNAG	2 cut(s)	43, 52
BstDSI	CCRYGG	2 cut(s)	689, 727
BstF5I	GGATG	2 cut(s)	194, 583
BstFNI	CGCG	1 cut(s)	406
BstKTI	GATC	5 cut(s)	212, 253, 635, 647, 902
BstMAI	GTCTC	2 cut(s)	387, 1020
BstMBI	GATC	5 cut(s)	209, 250, 632, 644, 899
BstMCI	CGRYCG	1 cut(s)	970
BstMWI	GCNNNNNNNGC	3 cut(s)	190, 290, 456
BstNI	CCWGG	5 cut(s)	276, 335, 709, 765, 861
BstNSI	RCATGY	1 cut(s)	450
BstPAI	GACNNNNGTC	1 cut(s)	276
BstSCI	CCNGG	9 cut(s)	198, 274, 333, 352, 353, 707, 740, 763, 859
BstUI	CGCG	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	215
BstX2I	RGATCY	2 cut(s)	644, 899
BstXI	CCANNNNNNTGG	1 cut(s)	734
BstYI	RGATCY	2 cut(s)	644, 899
BstZI	CGGCCG	1 cut(s)	967
Bsu15I	ATCGAT	1 cut(s)	156
BsuRI	GGCC	7 cut(s)	530, 726, 763, 819, 855, 943, 969
BsuTUI	ATCGAT	1 cut(s)	156
BtgI	CCRYGG	2 cut(s)	689, 727
BtsCI	GGATG	2 cut(s)	194, 583
BtsIMutI	CAGTG	2 cut(s)	847, 877
Cac8I	GCNNGC	3 cut(s)	182, 522, 907
CciI	TCATGA	1 cut(s)	774
Cfr13I	GGNCC	3 cut(s)	559, 693, 769
Cfr9I	CCCGGG	1 cut(s)	353
ClaI	ATCGAT	1 cut(s)	156
CseI	GACGC	2 cut(s)	273, 726
CspCI	CAANNNNNGTGG	2 cut(s)	898, 933
CviAII	CATG	7 cut(s)	281, 447, 670, 690, 728, 775, 824
DdeI	CTNAG	2 cut(s)	43, 52
DpnI	GATC	5 cut(s)	211, 252, 634, 646, 901
DpnII	GATC	5 cut(s)	209, 250, 632, 644, 899
EaeI	YGGCCR	3 cut(s)	528, 724, 967
EagI	CGGCCG	1 cut(s)	967
EclXI	CGGCCG	1 cut(s)	967
Eco130I	CCWWGG	3 cut(s)	525, 689, 727
Eco147I	AGGCCT	1 cut(s)	855
Eco47I	GGWCC	3 cut(s)	559, 693, 769
Eco52I	CGGCCG	1 cut(s)	967
Eco57I	CTGAAG	1 cut(s)	275
Eco88I	CYCGRG	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	769
EcoRII	CCWGG	5 cut(s)	274, 333, 707, 763, 859
EcoT14I	CCWWGG	3 cut(s)	525, 689, 727
ErhI	CCWWGG	3 cut(s)	525, 689, 727
Esp3I	CGTCTC	1 cut(s)	387
FaeI	CATG	7 cut(s)	284, 450, 673, 693, 731, 778, 827
FaqI	GGGAC	2 cut(s)	225, 782
FatI	CATG	7 cut(s)	280, 446, 669, 689, 727, 774, 823
FauI	CCCGC	1 cut(s)	411
FauNDI	CATATG	1 cut(s)	637
Fnu4HI	GCNGC	2 cut(s)	48, 204
FokI	GGATG	2 cut(s)	181, 570
Fsp4HI	GCNGC	2 cut(s)	48, 204
GluI	GCNGC	2 cut(s)	48, 204
HaeIII	GGCC	7 cut(s)	530, 726, 763, 819, 855, 943, 969
HapII	CCGG	4 cut(s)	200, 207, 354, 741
HgaI	GACGC	2 cut(s)	273, 726
Hin1II	CATG	7 cut(s)	284, 450, 673, 693, 731, 778, 827
HindIII	AAGCTT	1 cut(s)	1022
HinfI	GANTC	4 cut(s)	161, 665, 673, 933
HpaII	CCGG	4 cut(s)	200, 207, 354, 741
HphI	GGTGA	3 cut(s)	213, 422, 968
Hpy188I	TCNGA	6 cut(s)	55, 166, 255, 330, 575, 932
Hpy188III	TCNNGA	5 cut(s)	104, 113, 775, 890, 1002
HpyAV	CCTTC	5 cut(s)	96, 119, 298, 830, 866
HpyCH4V	TGCA	2 cut(s)	450, 459
HpyF10VI	GCNNNNNNNGC	3 cut(s)	190, 290, 456
HpyF3I	CTNAG	2 cut(s)	43, 52
Hsp92II	CATG	7 cut(s)	284, 450, 673, 693, 731, 778, 827
Kzo9I	GATC	5 cut(s)	209, 250, 632, 644, 899
Lsp1109I	GCAGC	1 cut(s)	215
LweI	GCATC	2 cut(s)	547, 876
MalI	GATC	5 cut(s)	211, 252, 634, 646, 901
MboI	GATC	5 cut(s)	209, 250, 632, 644, 899
MboII	GAAGA	3 cut(s)	20, 139, 562
MflI	RGATCY	2 cut(s)	644, 899
MlsI	TGGCCA	2 cut(s)	530, 726
MluCI	AATT	5 cut(s)	232, 565, 781, 894, 910
MluNI	TGGCCA	2 cut(s)	530, 726
MlyI	GAGTC	1 cut(s)	659
MmeI	TCCRAC	1 cut(s)	288
Mox20I	TGGCCA	2 cut(s)	530, 726
MroXI	GAANNNNTTC	1 cut(s)	312
MscI	TGGCCA	2 cut(s)	530, 726
MseI	TTAA	2 cut(s)	1020, 1027
Msp20I	TGGCCA	2 cut(s)	530, 726
MspCI	CTTAAG	1 cut(s)	1019
MspI	CCGG	4 cut(s)	200, 207, 354, 741
MspR9I	CCNGG	9 cut(s)	200, 276, 335, 354, 355, 709, 742, 765, 861
MvaI	CCWGG	5 cut(s)	276, 335, 709, 765, 861
MvnI	CGCG	1 cut(s)	406
MwoI	GCNNNNNNNGC	3 cut(s)	190, 290, 456
NciI	CCSGG	4 cut(s)	200, 354, 355, 742
NcoI	CCATGG	2 cut(s)	689, 727
NdeI	CATATG	1 cut(s)	637
NdeII	GATC	5 cut(s)	209, 250, 632, 644, 899
NlaIII	CATG	7 cut(s)	284, 450, 673, 693, 731, 778, 827
NlaIV	GGNNCC	2 cut(s)	739, 770
NmeAIII	GCCGAG	1 cut(s)	945
NspI	RCATGY	1 cut(s)	450
PagI	TCATGA	1 cut(s)	774
PceI	AGGCCT	1 cut(s)	855
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	3 cut(s)	161, 673, 933
PflMI	CCANNNNNTGG	2 cut(s)	487, 950
PfoI	TCCNGGA	1 cut(s)	859
PkrI	GCNGC	2 cut(s)	49, 205
PleI	GAGTC	1 cut(s)	659
PpsI	GAGTC	1 cut(s)	659
PpuMI	RGGWCCY	1 cut(s)	769
PshAI	GACNNNNGTC	1 cut(s)	276
Psp5II	RGGWCCY	1 cut(s)	769
Psp6I	CCWGG	5 cut(s)	274, 333, 707, 763, 859
PspGI	CCWGG	5 cut(s)	274, 333, 707, 763, 859
PspN4I	GGNNCC	2 cut(s)	739, 770
PspPI	GGNCC	3 cut(s)	559, 693, 769
PspPPI	RGGWCCY	1 cut(s)	769
PsuI	RGATCY	2 cut(s)	644, 899
SaqAI	TTAA	2 cut(s)	1020, 1027
SatI	GCNGC	2 cut(s)	48, 204
Sau3AI	GATC	5 cut(s)	209, 250, 632, 644, 899
Sau96I	GGNCC	3 cut(s)	559, 693, 769
SchI	GAGTC	1 cut(s)	659
ScrFI	CCNGG	9 cut(s)	200, 276, 335, 354, 355, 709, 742, 765, 861
SetI	ASST	7 cut(s)	111, 496, 707, 774, 813, 884, 1026
SfaNI	GCATC	2 cut(s)	547, 876
SinI	GGWCC	3 cut(s)	559, 693, 769
SmaI	CCCGGG	1 cut(s)	355
SmlI	CTYRAG	1 cut(s)	1019
SmoI	CTYRAG	1 cut(s)	1019
Sse9I	AATT	5 cut(s)	232, 565, 781, 894, 910
SseBI	AGGCCT	1 cut(s)	855
SsiI	CCGC	2 cut(s)	48, 404
StuI	AGGCCT	1 cut(s)	855
StyD4I	CCNGG	9 cut(s)	198, 274, 333, 352, 353, 707, 740, 763, 859
StyI	CCWWGG	3 cut(s)	525, 689, 727
TaqI	TCGA	4 cut(s)	156, 302, 347, 701
TasI	AATT	5 cut(s)	232, 565, 781, 894, 910
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	3 cut(s)	161, 673, 933
Tru1I	TTAA	2 cut(s)	1020, 1027
Tru9I	TTAA	2 cut(s)	1020, 1027
TscAI	CASTG	2 cut(s)	847, 877
TseI	GCWGC	1 cut(s)	203
TspDTI	ATGAA	7 cut(s)	140, 146, 152, 186, 330, 791, 812
TspMI	CCCGGG	1 cut(s)	353
TspRI	CASTG	2 cut(s)	847, 877
Van91I	CCANNNNNTGG	2 cut(s)	487, 950
Vha464I	CTTAAG	1 cut(s)	1019
VpaK11BI	GGWCC	3 cut(s)	559, 693, 769
XapI	RAATTY	1 cut(s)	232
XceI	RCATGY	1 cut(s)	450
XmaI	CCCGGG	1 cut(s)	353
XmnI	GAANNNNTTC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.