RLG00000029918

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
51287054 .. 51288058
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029918

Sequence Viewer

Length: 1005 bp
ATGAAGAAACCAGGTGCAGTGGAAGCATGTCCTTTGGAGTCCCAGTTTGCCTCTGAAGTACCACCATCGCCTTCTTCGCTTCCCAAAGAAGGTGGTGATGGTGATGACAAGAGCAATATGAAGATGAAGGAGAAAGTAATTGTCTTAATAGACGAGCCCCAACAATCACTAGAGAAGGAGAAGGAGGCTGCAGTGGGTGGATCCACCAGCTCTGGTGTGGTGCTTGATATGATACCTTCCAACGAGGGTCCGCCGGGAGGATCCAATCTAGAACTCGCGCTTTTCAACTCTTCGTCGTCTCAGTTAGTACCAGAGGTGGTGGAGGTGGAGGAGGGCTCAGACGAGAACCCGGCCGAGCGTGATCAGAAAAAGGAGCCCAGGGTTTTTAAATGCAACTTCTGCCAGAGAAAGTTCTCGACCTCCCAGGCCTTGGGAGGGCACCAGAACGCCCACAAGCAGGAGCGCCAGCTGGCGAAACGGCGGAGCCAAGCATTTGATCATATGGGTGGATTAGGGCACTCGCACTTTCCTTATTACAGCCCATATTCAGGCTTCTCCACACACTCTCTCTATGGATCTTACAACAGGTCTTCTCTTGGTGTCAGAATGGACTCCATGATTCATAAGCCTTCTTATACCCCGTGGTCCCAAACTTACGGCCGCTTTGGCCTTTCCATCGGCGGTGCTGCCAGCGGCCTCTGTGGAGGCGCTTCTGGCTGGTCGCGGCCAGGCTCGAGCCTCATCAACTCTATTGATCAACATAGGCTAACCTCCTTGCAAGGCCTCCAGAATAATATCAATGAATTAGGGCTTGCTGGACGAACTGCTACCACTCCAAGATTCGAGCAGGGGAGTACTAGTGGTCTTCAAAACTTTGGTGGTTCAAATCTGTCAACTCTCAACAACAGGGTGCCGCCAACAAATAGTGCTGATCTTCTCCGACAAGCAGAGCCTCCTCAATGTGATACTGATGGTGCTGGACTCGATCTGTCCCTTAAGCTTTAG

Protein Analysis

335

Amino Acids

35.76

Weight (kDa)

6.09

Isoelectric Point (pI)

50.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 438, 910
AccB7I CCANNNNNTGG 1 cut(s) 430
AccII CGCG 2 cut(s) 278, 724
AciI CCGC 7 cut(s) 251, 481, 661, 681, 693, 724, 914
AclWI GGATC 5 cut(s) 195, 208, 255, 268, 583
AcoI YGGCCR 3 cut(s) 351, 658, 725
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 3 cut(s) 60, 309, 856
AfiI CCNNNNNNNGG 6 cut(s) 89, 257, 430, 435, 457, 548
AflII CTTAAG 1 cut(s) 995
AgsI TTSAA 3 cut(s) 286, 869, 885
AhlI ACTAGT 1 cut(s) 857
AjnI CCWGG 4 cut(s) 10, 377, 423, 727
AluBI AGCT 3 cut(s) 210, 469, 1000
AluI AGCT 3 cut(s) 210, 469, 1000
Alw26I GTCTC 1 cut(s) 303
AlwI GGATC 5 cut(s) 195, 208, 255, 268, 583
Ama87I CYCGRG 1 cut(s) 733
AoxI GGCC 7 cut(s) 351, 426, 658, 667, 694, 725, 781
ApeKI GCWGC 2 cut(s) 188, 686
AspLEI GCGC 3 cut(s) 280, 465, 710
AspS9I GGNCC 2 cut(s) 248, 645
AsuC2I CCSGG 2 cut(s) 255, 350
AsuHPI GGTGA 2 cut(s) 107, 113
AvaI CYCGRG 1 cut(s) 733
AvaII GGWCC 2 cut(s) 248, 645
BaeGI GKGCMC 2 cut(s) 441, 519
BamHI GGATCC 2 cut(s) 200, 260
BanI GGYRCC 2 cut(s) 438, 910
BanII GRGCYC 3 cut(s) 159, 338, 378
BbsI GAAGAC 2 cut(s) 582, 857
BbvI GCAGC 2 cut(s) 175, 673
BccI CCATC 4 cut(s) 73, 92, 683, 965
BceAI ACGGC 2 cut(s) 494, 673
BciT130I CCWGG 4 cut(s) 12, 379, 425, 729
BclI TGATCA 3 cut(s) 361, 496, 754
BcnI CCSGG 2 cut(s) 255, 350
BcoDI GTCTC 1 cut(s) 303
BcuI ACTAGT 1 cut(s) 857
BfaI CTAG 3 cut(s) 170, 269, 858
BfmI CTRYAG 1 cut(s) 189
BfoI RGCGCY 2 cut(s) 466, 711
BfrI CTTAAG 1 cut(s) 995
BglI GCCNNNNNGGC 1 cut(s) 666
BisI GCNGC 6 cut(s) 189, 661, 687, 694, 725, 914
BlsI GCNGC 6 cut(s) 190, 662, 688, 695, 726, 915
BmcAI AGTACT 1 cut(s) 856
Bme1390I CCNGG 6 cut(s) 12, 255, 350, 379, 425, 729
Bme18I GGWCC 2 cut(s) 248, 645
BmeT110I CYCGRG 1 cut(s) 733
BmgT120I GGNCC 2 cut(s) 248, 645
BmiI GGNNCC 8 cut(s) 202, 249, 262, 375, 440, 485, 647, 912
BmrFI CCNGG 6 cut(s) 12, 255, 350, 379, 425, 729
BmrI ACTGGG 1 cut(s) 37
BmuI ACTGGG 1 cut(s) 37
BpiI GAAGAC 2 cut(s) 582, 857
BplI GAGNNNNNCTC 2 cut(s) 320, 352
BpmI CTGGAG 1 cut(s) 770
BpuMI CCSGG 2 cut(s) 255, 350
BsaJI CCNNGG 5 cut(s) 377, 378, 423, 429, 641
BsaXI ACNNNNNCTCC 4 cut(s) 29, 59, 844, 874
Bsc4I CCNNNNNNNGG 6 cut(s) 89, 257, 430, 435, 457, 548
Bse1I ACTGG 1 cut(s) 43
BseBI CCWGG 4 cut(s) 12, 379, 425, 729
BseDI CCNNGG 5 cut(s) 377, 378, 423, 429, 641
BseLI CCNNNNNNNGG 6 cut(s) 89, 257, 430, 435, 457, 548
BseMII CTCAG 2 cut(s) 314, 351
BseNI ACTGG 1 cut(s) 43
BseRI GAGGAG 2 cut(s) 344, 945
BseSI GKGCMC 2 cut(s) 441, 519
BseX3I CGGCCG 2 cut(s) 351, 658
BseXI GCAGC 2 cut(s) 175, 673
BsgI GTGCAG 1 cut(s) 36
Bsh1236I CGCG 2 cut(s) 278, 724
Bsh1285I CGRYCG 2 cut(s) 354, 661
BshFI GGCC 7 cut(s) 353, 428, 660, 669, 696, 727, 783
BshNI GGYRCC 2 cut(s) 438, 910
BsiEI CGRYCG 2 cut(s) 354, 661
BsiHKCI CYCGRG 1 cut(s) 733
BsiSI CCGG 2 cut(s) 254, 350
BslFI GGGAC 3 cut(s) 25, 631, 976
BslI CCNNNNNNNGG 6 cut(s) 89, 257, 430, 435, 457, 548
BsmAI GTCTC 1 cut(s) 303
BsmBI CGTCTC 1 cut(s) 303
BsmFI GGGAC 3 cut(s) 25, 631, 976
BsnI GGCC 7 cut(s) 353, 428, 660, 669, 696, 727, 783
BsoBI CYCGRG 1 cut(s) 733
Bsp1286I GDGCHC 5 cut(s) 159, 338, 378, 441, 519
Bsp143I GATC 8 cut(s) 200, 260, 361, 496, 575, 754, 931, 985
BspACI CCGC 7 cut(s) 251, 481, 661, 681, 693, 724, 914
BspANI GGCC 7 cut(s) 353, 428, 660, 669, 696, 727, 783
BspCNI CTCAG 2 cut(s) 313, 350
BspFNI CGCG 2 cut(s) 278, 724
BspLI GGNNCC 8 cut(s) 202, 249, 262, 375, 440, 485, 647, 912
BspMAI CTGCAG 1 cut(s) 193
BspPI GGATC 5 cut(s) 195, 208, 255, 268, 583
BspT107I GGYRCC 2 cut(s) 438, 910
BspTI CTTAAG 1 cut(s) 995
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 5 cut(s) 377, 378, 423, 429, 641
BssMI GATC 8 cut(s) 200, 260, 361, 496, 575, 754, 931, 985
BssT1I CCWWGG 1 cut(s) 429
Bst2UI CCWGG 4 cut(s) 12, 379, 425, 729
Bst6I CTCTTC 1 cut(s) 295
BstAFI CTTAAG 1 cut(s) 995
BstAPI GCANNNNNTGC 1 cut(s) 399
BstC8I GCNNGC 4 cut(s) 467, 471, 691, 813
BstDEI CTNAG 2 cut(s) 300, 337
BstDSI CCRYGG 1 cut(s) 641
BstFNI CGCG 2 cut(s) 278, 724
BstH2I RGCGCY 2 cut(s) 466, 711
BstHHI GCGC 3 cut(s) 280, 465, 710
BstKTI GATC 8 cut(s) 203, 263, 364, 499, 578, 757, 934, 988
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 8 cut(s) 200, 260, 361, 496, 575, 754, 931, 985
BstMCI CGRYCG 2 cut(s) 354, 661
BstMWI GCNNNNNNNGC 5 cut(s) 23, 76, 399, 666, 714
BstNI CCWGG 4 cut(s) 12, 379, 425, 729
BstNSI RCATGY 1 cut(s) 30
BstSCI CCNGG 6 cut(s) 10, 253, 348, 377, 423, 727
BstSFI CTRYAG 1 cut(s) 189
BstSLI GKGCMC 2 cut(s) 441, 519
BstUI CGCG 2 cut(s) 278, 724
BstV1I GCAGC 2 cut(s) 175, 673
BstV2I GAAGAC 2 cut(s) 582, 857
BstX2I RGATCY 3 cut(s) 200, 260, 575
BstYI RGATCY 3 cut(s) 200, 260, 575
BstZI CGGCCG 2 cut(s) 351, 658
BsuRI GGCC 7 cut(s) 353, 428, 660, 669, 696, 727, 783
BtgI CCRYGG 1 cut(s) 641
BtgZI GCGATG 1 cut(s) 51
BtsI GCAGTG 2 cut(s) 24, 198
BtsIMutI CAGTG 2 cut(s) 24, 198
Cac8I GCNNGC 4 cut(s) 467, 471, 691, 813
CfoI GCGC 3 cut(s) 280, 465, 710
Cfr13I GGNCC 2 cut(s) 248, 645
CsiI ACCWGGT 1 cut(s) 10
Csp6I GTAC 3 cut(s) 59, 308, 855
CspCI CAANNNNNGTGG 2 cut(s) 73, 108
CviAII CATG 2 cut(s) 27, 616
CviQI GTAC 3 cut(s) 59, 308, 855
DdeI CTNAG 2 cut(s) 300, 337
DpnI GATC 8 cut(s) 202, 262, 363, 498, 577, 756, 933, 987
DpnII GATC 8 cut(s) 200, 260, 361, 496, 575, 754, 931, 985
DraI TTTAAA 1 cut(s) 388
EaeI YGGCCR 3 cut(s) 351, 658, 725
EagI CGGCCG 2 cut(s) 351, 658
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
EciI GGCGGA 2 cut(s) 240, 496
EclXI CGGCCG 2 cut(s) 351, 658
Eco130I CCWWGG 1 cut(s) 429
Eco147I AGGCCT 2 cut(s) 428, 783
Eco24I GRGCYC 3 cut(s) 159, 338, 378
Eco47I GGWCC 2 cut(s) 248, 645
Eco52I CGGCCG 2 cut(s) 351, 658
Eco57I CTGAAG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 733
EcoRII CCWGG 4 cut(s) 10, 377, 423, 727
EcoT14I CCWWGG 1 cut(s) 429
EcoT38I GRGCYC 3 cut(s) 159, 338, 378
ErhI CCWWGG 1 cut(s) 429
Esp3I CGTCTC 1 cut(s) 303
FaeI CATG 2 cut(s) 30, 619
FaqI GGGAC 3 cut(s) 25, 631, 976
FatI CATG 2 cut(s) 26, 615
FauNDI CATATG 1 cut(s) 501
FbaI TGATCA 3 cut(s) 361, 496, 754
Fnu4HI GCNGC 6 cut(s) 189, 661, 687, 694, 725, 914
FriOI GRGCYC 3 cut(s) 159, 338, 378
Fsp4HI GCNGC 6 cut(s) 189, 661, 687, 694, 725, 914
FspBI CTAG 3 cut(s) 170, 269, 858
GlaI GCGC 3 cut(s) 279, 464, 709
GluI GCNGC 6 cut(s) 189, 661, 687, 694, 725, 914
GsuI CTGGAG 1 cut(s) 770
HaeII RGCGCY 2 cut(s) 466, 711
HaeIII GGCC 7 cut(s) 353, 428, 660, 669, 696, 727, 783
HapII CCGG 2 cut(s) 254, 350
HhaI GCGC 3 cut(s) 280, 465, 710
Hin1II CATG 2 cut(s) 30, 619
Hin6I GCGC 3 cut(s) 278, 463, 708
HinP1I GCGC 3 cut(s) 278, 463, 708
HincII GTYRAC 1 cut(s) 894
HindII GTYRAC 1 cut(s) 894
HindIII AAGCTT 1 cut(s) 998
HinfI GANTC 5 cut(s) 38, 611, 619, 840, 981
HpaII CCGG 2 cut(s) 254, 350
HphI GGTGA 2 cut(s) 107, 113
Hpy166II GTNNAC 1 cut(s) 894
Hpy188I TCNGA 5 cut(s) 55, 340, 366, 605, 941
Hpy188III TCNNGA 3 cut(s) 269, 415, 787
Hpy8I GTNNAC 1 cut(s) 894
Hpy99I CGWCG 1 cut(s) 298
HpyAV CCTTC 7 cut(s) 81, 83, 121, 169, 175, 246, 639
HpyCH4V TGCA 4 cut(s) 17, 191, 393, 778
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 76, 399, 666, 714
HpyF3I CTNAG 2 cut(s) 300, 337
Hsp92II CATG 2 cut(s) 30, 619
HspAI GCGC 3 cut(s) 278, 463, 708
Ksp22I TGATCA 3 cut(s) 361, 496, 754
Kzo9I GATC 8 cut(s) 200, 260, 361, 496, 575, 754, 931, 985
LmnI GCTCC 3 cut(s) 373, 460, 483
Lsp1109I GCAGC 2 cut(s) 175, 673
MabI ACCWGGT 1 cut(s) 10
MaeI CTAG 3 cut(s) 170, 269, 858
MalI GATC 8 cut(s) 202, 262, 363, 498, 577, 756, 933, 987
MboI GATC 8 cut(s) 200, 260, 361, 496, 575, 754, 931, 985
MboII GAAGA 7 cut(s) 16, 66, 133, 282, 582, 857, 926
MflI RGATCY 3 cut(s) 200, 260, 575
MhlI GDGCHC 5 cut(s) 159, 338, 378, 441, 519
MluCI AATT 2 cut(s) 138, 803
MlyI GAGTC 3 cut(s) 47, 605, 975
MmeI TCCRAC 2 cut(s) 264, 964
MseI TTAA 3 cut(s) 146, 387, 996
MslI CAYNNNNRTG 1 cut(s) 504
MspA1I CMGCKG 2 cut(s) 469, 693
MspCI CTTAAG 1 cut(s) 995
MspI CCGG 2 cut(s) 254, 350
MspR9I CCNGG 6 cut(s) 12, 255, 350, 379, 425, 729
MvaI CCWGG 4 cut(s) 12, 379, 425, 729
MvnI CGCG 2 cut(s) 278, 724
MwoI GCNNNNNNNGC 5 cut(s) 23, 76, 399, 666, 714
NciI CCSGG 2 cut(s) 255, 350
NdeI CATATG 1 cut(s) 501
NdeII GATC 8 cut(s) 200, 260, 361, 496, 575, 754, 931, 985
NlaIII CATG 2 cut(s) 30, 619
NlaIV GGNNCC 8 cut(s) 202, 249, 262, 375, 440, 485, 647, 912
NmeAIII GCCGAG 1 cut(s) 379
NspI RCATGY 1 cut(s) 30
PaeR7I CTCGAG 1 cut(s) 733
PasI CCCWGGG 1 cut(s) 378
PceI AGGCCT 2 cut(s) 428, 783
PfeI GAWTC 2 cut(s) 619, 840
PflMI CCANNNNNTGG 1 cut(s) 430
PkrI GCNGC 6 cut(s) 190, 662, 688, 695, 726, 915
PleI GAGTC 3 cut(s) 46, 605, 975
PpsI GAGTC 3 cut(s) 46, 605, 975
Psp6I CCWGG 4 cut(s) 10, 377, 423, 727
PspGI CCWGG 4 cut(s) 10, 377, 423, 727
PspN4I GGNNCC 8 cut(s) 202, 249, 262, 375, 440, 485, 647, 912
PspPI GGNCC 2 cut(s) 248, 645
PspXI VCTCGAGB 1 cut(s) 733
PstI CTGCAG 1 cut(s) 193
PsuI RGATCY 3 cut(s) 200, 260, 575
PvuII CAGCTG 1 cut(s) 469
RsaI GTAC 3 cut(s) 60, 309, 856
RsaNI GTAC 3 cut(s) 59, 308, 855
RseI CAYNNNNRTG 1 cut(s) 504
SaqAI TTAA 3 cut(s) 146, 387, 996
SatI GCNGC 6 cut(s) 189, 661, 687, 694, 725, 914
Sau3AI GATC 8 cut(s) 200, 260, 361, 496, 575, 754, 931, 985
Sau96I GGNCC 2 cut(s) 248, 645
ScaI AGTACT 1 cut(s) 856
SchI GAGTC 3 cut(s) 47, 605, 975
ScrFI CCNGG 6 cut(s) 12, 255, 350, 379, 425, 729
SduI GDGCHC 5 cut(s) 159, 338, 378, 441, 519
SexAI ACCWGGT 1 cut(s) 10
SfcI CTRYAG 1 cut(s) 189
SfiI GGCCNNNNNGGCC 1 cut(s) 666
Sfr274I CTCGAG 1 cut(s) 733
SinI GGWCC 2 cut(s) 248, 645
SlaI CTCGAG 1 cut(s) 733
SmiMI CAYNNNNRTG 1 cut(s) 504
SmlI CTYRAG 2 cut(s) 733, 995
SmoI CTYRAG 2 cut(s) 733, 995
SpeI ACTAGT 1 cut(s) 857
Sse9I AATT 2 cut(s) 138, 803
SseBI AGGCCT 2 cut(s) 428, 783
SsiI CCGC 7 cut(s) 251, 481, 661, 681, 693, 724, 914
SspMI CTAG 3 cut(s) 170, 269, 858
StuI AGGCCT 2 cut(s) 428, 783
StyD4I CCNGG 6 cut(s) 10, 253, 348, 377, 423, 727
StyI CCWWGG 1 cut(s) 429
TaqI TCGA 4 cut(s) 416, 734, 843, 984
TasI AATT 2 cut(s) 138, 803
TatI WGTACW 1 cut(s) 854
TauI GCSGC 4 cut(s) 663, 696, 727, 916
TfiI GAWTC 2 cut(s) 619, 840
Tru1I TTAA 3 cut(s) 146, 387, 996
Tru9I TTAA 3 cut(s) 146, 387, 996
TscAI CASTG 2 cut(s) 24, 198
TseI GCWGC 2 cut(s) 188, 686
TspDTI ATGAA 5 cut(s) 17, 134, 140, 611, 816
TspRI CASTG 2 cut(s) 24, 198
Van91I CCANNNNNTGG 1 cut(s) 430
Vha464I CTTAAG 1 cut(s) 995
VpaK11BI GGWCC 2 cut(s) 248, 645
XbaI TCTAGA 1 cut(s) 268
XceI RCATGY 1 cut(s) 30
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
XhoI CTCGAG 1 cut(s) 733
XspI CTAG 3 cut(s) 170, 269, 858
ZrmI AGTACT 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.