Rh4BG156700

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0005913
Physical Location & Seq
Reverse (-)
28272489 .. 28273496
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG156700.1

Sequence Viewer

Length: 915 bp
ATGGAGAAACCAGTATTAGAAGTATGCGCTAATTCTTCCGAGGCCTCGAGCATCATCTCGGCCGCCTCGGACAAGAAGAATACTATGAAGATGAAGGAGATCAACGTCGCCGGCGAATCCAAACAACAACAAAAGCCAGAGGTGGTGGCGGAGGAGGCAGAAGCCAATGTTGAGCTTGCACTTTTCAAGGCTAATCCGCCGGAGGAGGAGGCCTCGGAGGAGTTAAATTGCGCGCGTGGTCAACAGAAGAAAGAAAAAGAAGATACTAGGGTTTTCAAGTGCAACTTCTGCAACAGAAACTTCTCTACTTCCCAAGCCTTGGGAGGCCACCAAAACGCTCACAAACCGGAACGCCAGCTTGCAAAACGGCGTAGCCAAGGATTGGATGTGGGTGGTGGATTTGGATTAGGGCAGTCATACTATCCTTACAATTTCAGTCCATATTCTTCATCTACTCTTTCTCCACACTACTCACTTTATGGATCTAGGTCGACGTCTCTTGGTGTTAGGCTAGATTCCATGATTCATAAGCCTTCTTATACCCCGTGGTACGACCGCCTAGGTGGCGGTGCAGGGTGGTCGAGACCAGCTTCCTCAAGCCTCCTGCAGAACCACCCTATTAATGATCATAGGCTCAGCTTCCAGGGTTCTCAGAATAATATCAACACCAACGAATTAGGGCTTGGTGTACGAACATTTAATGCTTCATCAAGATTGGAGGAGAGTATTACTAGTACTCGTGCTGTTCGCAACTTCGGTGGTACTTGGAATCTTAACGCAATCAACAACAACAACAACAAAAAGCCGCCACTGCCACCATTCAGTGGTAGTACTGATCTTCTGTCTCGAGTAGAGCGGCCCCGAAAGAATGACCAGGATGGTGACGATGACATCGATTTGACGCTTAAGCTTTGA

Protein Analysis

304

Amino Acids

33.56

Weight (kDa)

8.25

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 91 - 116 5.7e-06 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 497
AccB7I CCANNNNNTGG 3 cut(s) 319, 382, 824
AccBSI CCGCTC 1 cut(s) 856
AccI GTMKAC 1 cut(s) 491
AccII CGCG 2 cut(s) 233, 235
AciI CCGC 7 cut(s) 63, 149, 197, 556, 567, 806, 856
AclWI GGATC 1 cut(s) 490
AcoI YGGCCR 1 cut(s) 60
AcyI GRCGYC 1 cut(s) 494
AfaI GTAC 5 cut(s) 551, 690, 736, 763, 832
AfiI CCNNNNNNNGG 3 cut(s) 319, 382, 824
AflII CTTAAG 1 cut(s) 905
AgsI TTSAA 2 cut(s) 187, 277
AhlI ACTAGT 1 cut(s) 731
AjnI CCWGG 2 cut(s) 642, 873
AjuI GAANNNNNNNTTGG 2 cut(s) 666, 698
AluBI AGCT 5 cut(s) 175, 358, 590, 639, 910
AluI AGCT 5 cut(s) 175, 358, 590, 639, 910
Alw26I GTCTC 3 cut(s) 501, 577, 849
AlwI GGATC 1 cut(s) 490
Ama87I CYCGRG 2 cut(s) 46, 846
AoxI GGCC 5 cut(s) 42, 60, 210, 325, 857
AseI ATTAAT 1 cut(s) 621
AspA2I CCTAGG 1 cut(s) 559
AspLEI GCGC 3 cut(s) 29, 233, 235
AspS9I GGNCC 1 cut(s) 858
AsuHPI GGTGA 1 cut(s) 893
AvaI CYCGRG 2 cut(s) 46, 846
AvrII CCTAGG 1 cut(s) 559
BaeI ACNNNNGTAYC 2 cut(s) 255, 288
BauI CACGAG 1 cut(s) 738
BccI CCATC 1 cut(s) 872
BceAI ACGGC 1 cut(s) 383
BcgI CGANNNNNNTGC 2 cut(s) 561, 595
BciT130I CCWGG 2 cut(s) 644, 875
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 3 cut(s) 501, 577, 849
BcuI ACTAGT 1 cut(s) 731
BfaI CTAG 5 cut(s) 267, 486, 512, 560, 732
BfmI CTRYAG 1 cut(s) 605
BfrI CTTAAG 1 cut(s) 905
BglI GCCNNNNNGGC 1 cut(s) 564
BisI GCNGC 3 cut(s) 63, 806, 857
BlnI CCTAGG 1 cut(s) 559
BlpI GCTNAGC 1 cut(s) 635
BlsI GCNGC 3 cut(s) 64, 807, 858
BmcAI AGTACT 2 cut(s) 736, 832
Bme1390I CCNGG 2 cut(s) 644, 875
BmeT110I CYCGRG 2 cut(s) 46, 846
BmgT120I GGNCC 1 cut(s) 858
BmiI GGNNCC 1 cut(s) 860
BmrFI CCNGG 2 cut(s) 644, 875
BmsI GCATC 1 cut(s) 60
BplI GAGNNNNNCTC 2 cut(s) 197, 229
Bpu1102I GCTNAGC 1 cut(s) 635
BpuEI CTTGAG 1 cut(s) 580
Bsa29I ATCGAT 1 cut(s) 894
BsaHI GRCGYC 1 cut(s) 494
BsaI GGTCTC 1 cut(s) 577
BsaJI CCNNGG 8 cut(s) 39, 66, 213, 318, 376, 545, 559, 643
BsaWI WCCGGW 1 cut(s) 346
BsaXI ACNNNNNCTCC 2 cut(s) 445, 475
Bsc4I CCNNNNNNNGG 3 cut(s) 319, 382, 824
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 11
BseBI CCWGG 2 cut(s) 644, 875
BseCI ATCGAT 1 cut(s) 894
BseDI CCNNGG 8 cut(s) 39, 66, 213, 318, 376, 545, 559, 643
BseGI GGATG 2 cut(s) 391, 883
BseLI CCNNNNNNNGG 3 cut(s) 319, 382, 824
BseMII CTCAG 2 cut(s) 649, 665
BseNI ACTGG 1 cut(s) 11
BsePI GCGCGC 1 cut(s) 231
BseRI GAGGAG 5 cut(s) 167, 218, 221, 233, 734
BseX3I CGGCCG 1 cut(s) 60
BsgI GTGCAG 1 cut(s) 591
Bsh1236I CGCG 2 cut(s) 233, 235
Bsh1285I CGRYCG 2 cut(s) 63, 556
BshFI GGCC 5 cut(s) 44, 62, 212, 327, 859
BshVI ATCGAT 1 cut(s) 894
BsiEI CGRYCG 2 cut(s) 63, 556
BsiHKCI CYCGRG 2 cut(s) 46, 846
BsiSI CCGG 3 cut(s) 111, 200, 347
BslI CCNNNNNNNGG 3 cut(s) 319, 382, 824
BsmAI GTCTC 3 cut(s) 501, 577, 849
BsmBI CGTCTC 1 cut(s) 501
BsnI GGCC 5 cut(s) 44, 62, 212, 327, 859
Bso31I GGTCTC 1 cut(s) 577
BsoBI CYCGRG 2 cut(s) 46, 846
Bsp143I GATC 4 cut(s) 99, 482, 625, 835
Bsp1720I GCTNAGC 1 cut(s) 635
BspACI CCGC 7 cut(s) 63, 149, 197, 556, 567, 806, 856
BspANI GGCC 5 cut(s) 44, 62, 212, 327, 859
BspCNI CTCAG 2 cut(s) 648, 664
BspDI ATCGAT 1 cut(s) 894
BspFNI CGCG 2 cut(s) 233, 235
BspLI GGNNCC 1 cut(s) 860
BspMAI CTGCAG 1 cut(s) 609
BspPI GGATC 1 cut(s) 490
BspTI CTTAAG 1 cut(s) 905
BspTNI GGTCTC 1 cut(s) 577
BsrBI CCGCTC 1 cut(s) 856
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 1 cut(s) 11
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 8 cut(s) 39, 66, 213, 318, 376, 545, 559, 643
BssHII GCGCGC 1 cut(s) 231
BssMI GATC 4 cut(s) 99, 482, 625, 835
BssNI GRCGYC 1 cut(s) 494
BssSI CACGAG 1 cut(s) 738
BssT1I CCWWGG 3 cut(s) 318, 376, 559
Bst2BI CACGAG 1 cut(s) 738
Bst2UI CCWGG 2 cut(s) 644, 875
BstACI GRCGYC 1 cut(s) 494
BstAFI CTTAAG 1 cut(s) 905
BstAPI GCANNNNNTGC 1 cut(s) 288
BstC8I GCNNGC 5 cut(s) 112, 177, 233, 356, 360
BstDEI CTNAG 2 cut(s) 635, 651
BstDSI CCRYGG 1 cut(s) 545
BstF5I GGATG 2 cut(s) 391, 883
BstFNI CGCG 2 cut(s) 233, 235
BstHHI GCGC 3 cut(s) 29, 233, 235
BstKTI GATC 4 cut(s) 102, 485, 628, 838
BstMAI GTCTC 3 cut(s) 501, 577, 849
BstMBI GATC 4 cut(s) 99, 482, 625, 835
BstMCI CGRYCG 2 cut(s) 63, 556
BstMWI GCNNNNNNNGC 4 cut(s) 155, 288, 564, 811
BstNI CCWGG 2 cut(s) 644, 875
BstSCI CCNGG 2 cut(s) 642, 873
BstSFI CTRYAG 1 cut(s) 605
BstUI CGCG 2 cut(s) 233, 235
BstX2I RGATCY 1 cut(s) 482
BstYI RGATCY 1 cut(s) 482
BstZI CGGCCG 1 cut(s) 60
Bsu15I ATCGAT 1 cut(s) 894
BsuRI GGCC 5 cut(s) 44, 62, 212, 327, 859
BsuTUI ATCGAT 1 cut(s) 894
BtgI CCRYGG 1 cut(s) 545
BtsCI GGATG 2 cut(s) 391, 883
BtsI GCAGTG 1 cut(s) 809
BtsIMutI CAGTG 2 cut(s) 809, 829
Cac8I GCNNGC 5 cut(s) 112, 177, 233, 356, 360
CfoI GCGC 3 cut(s) 29, 233, 235
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 858
ClaI ATCGAT 1 cut(s) 894
CseI GACGC 1 cut(s) 910
Csp6I GTAC 5 cut(s) 550, 689, 735, 762, 831
CspCI CAANNNNNGTGG 2 cut(s) 739, 774
CviAII CATG 1 cut(s) 520
CviQI GTAC 5 cut(s) 550, 689, 735, 762, 831
DdeI CTNAG 2 cut(s) 635, 651
DpnI GATC 4 cut(s) 101, 484, 627, 837
DpnII GATC 4 cut(s) 99, 482, 625, 835
EaeI YGGCCR 1 cut(s) 60
EagI CGGCCG 1 cut(s) 60
EciI GGCGGA 2 cut(s) 164, 186
EclXI CGGCCG 1 cut(s) 60
Eco130I CCWWGG 3 cut(s) 318, 376, 559
Eco147I AGGCCT 2 cut(s) 44, 212
Eco31I GGTCTC 1 cut(s) 577
Eco52I CGGCCG 1 cut(s) 60
Eco88I CYCGRG 2 cut(s) 46, 846
EcoRII CCWGG 2 cut(s) 642, 873
EcoT14I CCWWGG 3 cut(s) 318, 376, 559
ErhI CCWWGG 3 cut(s) 318, 376, 559
Esp3I CGTCTC 1 cut(s) 501
FaeI CATG 1 cut(s) 523
FaiI YATR 9 cut(s) 25, 86, 418, 442, 480, 521, 528, 540, 630
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FatI CATG 1 cut(s) 519
FbaI TGATCA 1 cut(s) 625
FblI GTMKAC 1 cut(s) 491
Fnu4HI GCNGC 3 cut(s) 63, 806, 857
FokI GGATG 2 cut(s) 398, 890
Fsp4HI GCNGC 3 cut(s) 63, 806, 857
FspBI CTAG 5 cut(s) 267, 486, 512, 560, 732
GlaI GCGC 3 cut(s) 28, 232, 234
GluI GCNGC 3 cut(s) 63, 806, 857
HaeIII GGCC 5 cut(s) 44, 62, 212, 327, 859
HapII CCGG 3 cut(s) 111, 200, 347
HgaI GACGC 1 cut(s) 910
HhaI GCGC 3 cut(s) 29, 233, 235
Hin1I GRCGYC 1 cut(s) 494
Hin1II CATG 1 cut(s) 523
Hin6I GCGC 3 cut(s) 27, 231, 233
HinP1I GCGC 3 cut(s) 27, 231, 233
HincII GTYRAC 2 cut(s) 242, 492
HindII GTYRAC 2 cut(s) 242, 492
HindIII AAGCTT 1 cut(s) 908
HinfI GANTC 4 cut(s) 116, 515, 523, 769
HpaII CCGG 3 cut(s) 111, 200, 347
HphI GGTGA 1 cut(s) 893
Hpy166II GTNNAC 3 cut(s) 242, 492, 689
Hpy188I TCNGA 4 cut(s) 40, 70, 217, 654
Hpy188III TCNNGA 3 cut(s) 582, 711, 846
Hpy8I GTNNAC 3 cut(s) 242, 492, 689
Hpy99I CGWCG 2 cut(s) 110, 496
HpyAV CCTTC 2 cut(s) 88, 543
HpyCH4IV ACGT 2 cut(s) 105, 494
HpyCH4V TGCA 6 cut(s) 179, 282, 291, 362, 572, 607
HpyF10VI GCNNNNNNNGC 4 cut(s) 155, 288, 564, 811
HpyF3I CTNAG 2 cut(s) 635, 651
HpySE526I ACGT 2 cut(s) 105, 494
Hsp92I GRCGYC 1 cut(s) 494
Hsp92II CATG 1 cut(s) 523
HspAI GCGC 3 cut(s) 27, 231, 233
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 4 cut(s) 99, 482, 625, 835
LweI GCATC 1 cut(s) 60
MaeI CTAG 5 cut(s) 267, 486, 512, 560, 732
MaeII ACGT 2 cut(s) 105, 494
MaeIII GTNAC 1 cut(s) 881
MalI GATC 4 cut(s) 101, 484, 627, 837
MbiI CCGCTC 1 cut(s) 856
MboI GATC 4 cut(s) 99, 482, 625, 835
MboII GAAGA 7 cut(s) 27, 88, 100, 259, 272, 438, 830
MflI RGATCY 1 cut(s) 482
MluCI AATT 4 cut(s) 31, 226, 430, 674
MreI CGCCGGCG 1 cut(s) 110
MroNI GCCGGC 1 cut(s) 110
MseI TTAA 5 cut(s) 224, 621, 699, 774, 906
MspCI CTTAAG 1 cut(s) 905
MspI CCGG 3 cut(s) 111, 200, 347
MspR9I CCNGG 2 cut(s) 644, 875
MvaI CCWGG 2 cut(s) 644, 875
MvnI CGCG 2 cut(s) 233, 235
MwoI GCNNNNNNNGC 4 cut(s) 155, 288, 564, 811
NaeI GCCGGC 1 cut(s) 112
NdeII GATC 4 cut(s) 99, 482, 625, 835
NgoMIV GCCGGC 1 cut(s) 110
NlaIII CATG 1 cut(s) 523
NlaIV GGNNCC 1 cut(s) 860
NmeAIII GCCGAG 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 881
PaeR7I CTCGAG 2 cut(s) 46, 846
PauI GCGCGC 1 cut(s) 231
PceI AGGCCT 2 cut(s) 44, 212
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 891
PdiI GCCGGC 1 cut(s) 112
PfeI GAWTC 4 cut(s) 116, 515, 523, 769
PflMI CCANNNNNTGG 3 cut(s) 319, 382, 824
PkrI GCNGC 3 cut(s) 64, 807, 858
PshBI ATTAAT 1 cut(s) 621
Psp6I CCWGG 2 cut(s) 642, 873
PspGI CCWGG 2 cut(s) 642, 873
PspN4I GGNNCC 1 cut(s) 860
PspPI GGNCC 1 cut(s) 858
PspXI VCTCGAGB 1 cut(s) 46
PstI CTGCAG 1 cut(s) 609
PsuI RGATCY 1 cut(s) 482
PteI GCGCGC 1 cut(s) 231
RsaI GTAC 5 cut(s) 551, 690, 736, 763, 832
RsaNI GTAC 5 cut(s) 550, 689, 735, 762, 831
SalI GTCGAC 1 cut(s) 490
SaqAI TTAA 5 cut(s) 224, 621, 699, 774, 906
SatI GCNGC 3 cut(s) 63, 806, 857
Sau3AI GATC 4 cut(s) 99, 482, 625, 835
Sau96I GGNCC 1 cut(s) 858
ScaI AGTACT 2 cut(s) 736, 832
ScrFI CCNGG 2 cut(s) 644, 875
SfaNI GCATC 1 cut(s) 60
SfcI CTRYAG 1 cut(s) 605
Sfr274I CTCGAG 2 cut(s) 46, 846
SgrAI CRCCGGYG 1 cut(s) 110
SlaI CTCGAG 2 cut(s) 46, 846
SmlI CTYRAG 4 cut(s) 46, 595, 846, 905
SmoI CTYRAG 4 cut(s) 46, 595, 846, 905
SpeI ACTAGT 1 cut(s) 731
Sse9I AATT 4 cut(s) 31, 226, 430, 674
SseBI AGGCCT 2 cut(s) 44, 212
SsiI CCGC 7 cut(s) 63, 149, 197, 556, 567, 806, 856
SspMI CTAG 5 cut(s) 267, 486, 512, 560, 732
StuI AGGCCT 2 cut(s) 44, 212
StyD4I CCNGG 2 cut(s) 642, 873
StyI CCWWGG 3 cut(s) 318, 376, 559
TaiI ACGT 2 cut(s) 108, 497
TaqI TCGA 5 cut(s) 47, 491, 581, 847, 894
TasI AATT 4 cut(s) 31, 226, 430, 674
TatI WGTACW 2 cut(s) 734, 830
TauI GCSGC 3 cut(s) 65, 808, 859
TfiI GAWTC 4 cut(s) 116, 515, 523, 769
Tru1I TTAA 5 cut(s) 224, 621, 699, 774, 906
Tru9I TTAA 5 cut(s) 224, 621, 699, 774, 906
TscAI CASTG 2 cut(s) 816, 829
TseFI GTSAC 1 cut(s) 881
Tsp45I GTSAC 1 cut(s) 881
TspDTI ATGAA 5 cut(s) 101, 107, 438, 515, 696
TspRI CASTG 2 cut(s) 816, 829
Van91I CCANNNNNTGG 3 cut(s) 319, 382, 824
Vha464I CTTAAG 1 cut(s) 905
VspI ATTAAT 1 cut(s) 621
XhoI CTCGAG 2 cut(s) 46, 846
XmaJI CCTAGG 1 cut(s) 559
XmiI GTMKAC 1 cut(s) 491
XspI CTAG 5 cut(s) 267, 486, 512, 560, 732
ZraI GACGTC 1 cut(s) 495
ZrmI AGTACT 2 cut(s) 736, 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.