Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005913

Physical Location & Seq

Genomic Coordinates Forward (+)

11666457 .. 11667525

Gene Structure 1069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG075500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGAAGAAACCAGGTGCAGTGGAAGCATGTCCTTTGGAGTCCCAGGTTGCCTCTGAAGTACCACCATCGCCTTCTTCGCTTCCCAAAGAAGGTGGTGATGGTGATGACAAGAGCAATATGAAGATGAAGGAGAAAGTAATTGTCTTAATAGACGAGCCCCAACAATCACTAGAGAAGGAGAAGGAGGCTGCGGTGGGTGGATCCACCAGATCTGGTGTGGTGCTTGATATGACACCTTCCAACCAGGGTCCGCCGGGTGGATCCAATCTAGAACTCGCTCTTTTCAACTCGTCGTCGTCTCAGTTAGTACCAGAGGTGGTGGAGGTGGAGGAGGGCTCAGACGAGAACCCAGTGGCGCGTGATCAGAAAAAGGAGCCCAGGGTTTTCAAATGCAACTTTTGCCAGAGAAAGTTCTCGACCTCCCAGGCCTTGGGAGGGCACCAGAACGCCCACAAGCAGGAGCGCCAGCTGGCGAAACGGCGGAGTCAAGCATTTGATCATATGGGTGGATTAGGGCACTCGCACTTTCCTTATTACAGCCCATATTCAGGCTTCTCCACACACTCTCTCTATGGATCTTACAACAGGTCTTCTCTTGGTGTCAGAATGGACTCCATGATTCATAAGCCTTCTTATACCCCGTGGTCCCAAACTTACGGCCGCTTTGGCCTTGCCCTCGGCGGTGCTGCCAGCGGCCTCGCTGGAGGCGCTTCTGGCTGGTCGCGGCCAGGCTCGAGCCTCATCAACTGTATTGATCAACATAGGCTAACCTCCTTGCAAGGCCTCCAGAATAATATCAATGAATTAGGGCTTGCTGGACGAACTGCTACCGCTCCAAGATTCGAGCAGGGGAGTACTAGTGGTCTTCAAAACTTTGGTGGTTCAAATCTGTCAGCTCTCAACAACAGGGTGCCGCCAACAAATGGTGCTGATCTTCTCCGACAAGCAGAGCCTCCTCAATGTGATACCGATGGGGTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009787 GO:0009788 GO:0009791 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

327

Amino Acids

34.91

Weight (kDa)

6.71

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005913)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12011 FvH4_7g04251
malus_domestica	MD07G1042100.v1.1
prunus_persica	Prupe.2G048100_v2.0.a1 Prupe.2G048400_v2.0.a1
pyrus_communis	pycom02g23410
rosa_chinensis	RchiOBHm_Chr1g0328791
rosa_laevigata	RLG00000008539 RLG00000029918
rosa_multiflora	Rmu_co8270465.1_g000001 Rmu_sc0000652.1_g000003 Rmu_sc0004241.1_g000001 Rmu_sc0013419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321370 Rroxscaffold_5G00354150
rosa_rugosa	Rorug01G0075900 Rorug04G0095500
rosa_samantha	Rh1AG094600 Rh1BG075500 Rh1CG091900 Rh1DG097900 Rh4AG157200 Rh4BG156700 Rh4CG167200 Rh4DG150900
rosa_wichuraiana	Rw1G007380 Rw4G012850 Rw4G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	438, 910
AccB7I	CCANNNNNTGG	2 cut(s)	430, 923
AccBSI	CCGCTC	1 cut(s)	833
AccII	CGCG	2 cut(s)	358, 724
AciI	CCGC	9 cut(s)	191, 251, 481, 661, 681, 693, 724, 831, 914
AclWI	GGATC	5 cut(s)	195, 208, 255, 268, 583
AcoI	YGGCCR	2 cut(s)	658, 725
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	3 cut(s)	60, 309, 856
AfiI	CCNNNNNNNGG	7 cut(s)	89, 257, 430, 435, 457, 548, 923
AgsI	TTSAA	4 cut(s)	286, 388, 869, 885
AhlI	ACTAGT	1 cut(s)	857
AjnI	CCWGG	6 cut(s)	10, 42, 243, 377, 423, 727
AluBI	AGCT	2 cut(s)	469, 896
AluI	AGCT	2 cut(s)	469, 896
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	5 cut(s)	195, 208, 255, 268, 583
Ama87I	CYCGRG	1 cut(s)	733
AoxI	GGCC	6 cut(s)	426, 658, 667, 694, 725, 781
ApeKI	GCWGC	2 cut(s)	188, 686
AspLEI	GCGC	3 cut(s)	358, 465, 710
AspS9I	GGNCC	2 cut(s)	248, 645
AsuC2I	CCSGG	1 cut(s)	255
AsuHPI	GGTGA	2 cut(s)	107, 113
AvaI	CYCGRG	1 cut(s)	733
AvaII	GGWCC	2 cut(s)	248, 645
BaeGI	GKGCMC	2 cut(s)	441, 519
BamHI	GGATCC	2 cut(s)	200, 260
BanI	GGYRCC	2 cut(s)	438, 910
BanII	GRGCYC	3 cut(s)	159, 338, 378
BbsI	GAAGAC	2 cut(s)	582, 857
BbvI	GCAGC	2 cut(s)	175, 673
BccI	CCATC	3 cut(s)	73, 92, 965
BceAI	ACGGC	2 cut(s)	494, 673
BciT130I	CCWGG	6 cut(s)	12, 44, 245, 379, 425, 729
BclI	TGATCA	3 cut(s)	361, 496, 754
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	303
BcuI	ACTAGT	1 cut(s)	857
BfaI	CTAG	3 cut(s)	170, 269, 858
BfoI	RGCGCY	2 cut(s)	466, 711
BglI	GCCNNNNNGGC	1 cut(s)	666
BglII	AGATCT	1 cut(s)	209
BisI	GCNGC	6 cut(s)	189, 661, 687, 694, 725, 914
BlsI	GCNGC	6 cut(s)	190, 662, 688, 695, 726, 915
BmcAI	AGTACT	1 cut(s)	856
Bme1390I	CCNGG	7 cut(s)	12, 44, 245, 255, 379, 425, 729
Bme18I	GGWCC	2 cut(s)	248, 645
BmeT110I	CYCGRG	1 cut(s)	733
BmgT120I	GGNCC	2 cut(s)	248, 645
BmiI	GGNNCC	7 cut(s)	202, 249, 262, 375, 440, 647, 912
BmrFI	CCNGG	7 cut(s)	12, 44, 245, 255, 379, 425, 729
BmrI	ACTGGG	1 cut(s)	344
BmuI	ACTGGG	1 cut(s)	344
BpiI	GAAGAC	2 cut(s)	582, 857
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
BpmI	CTGGAG	2 cut(s)	723, 770
BpuMI	CCSGG	1 cut(s)	255
BsaJI	CCNNGG	8 cut(s)	42, 244, 377, 378, 423, 429, 641, 676
BsaXI	ACNNNNNCTCC	2 cut(s)	844, 874
Bsc4I	CCNNNNNNNGG	7 cut(s)	89, 257, 430, 435, 457, 548, 923
Bse1I	ACTGG	1 cut(s)	350
BseBI	CCWGG	6 cut(s)	12, 44, 245, 379, 425, 729
BseDI	CCNNGG	8 cut(s)	42, 244, 377, 378, 423, 429, 641, 676
BseLI	CCNNNNNNNGG	7 cut(s)	89, 257, 430, 435, 457, 548, 923
BseMII	CTCAG	2 cut(s)	314, 351
BseNI	ACTGG	1 cut(s)	350
BseRI	GAGGAG	2 cut(s)	344, 945
BseSI	GKGCMC	2 cut(s)	441, 519
BseX3I	CGGCCG	1 cut(s)	658
BseXI	GCAGC	2 cut(s)	175, 673
BsgI	GTGCAG	1 cut(s)	36
Bsh1236I	CGCG	2 cut(s)	358, 724
Bsh1285I	CGRYCG	1 cut(s)	661
BshFI	GGCC	6 cut(s)	428, 660, 669, 696, 727, 783
BshNI	GGYRCC	2 cut(s)	438, 910
BsiEI	CGRYCG	1 cut(s)	661
BsiHKCI	CYCGRG	1 cut(s)	733
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	2 cut(s)	25, 631
BslI	CCNNNNNNNGG	7 cut(s)	89, 257, 430, 435, 457, 548, 923
BsmAI	GTCTC	1 cut(s)	303
BsmBI	CGTCTC	1 cut(s)	303
BsmFI	GGGAC	2 cut(s)	25, 631
BsnI	GGCC	6 cut(s)	428, 660, 669, 696, 727, 783
BsoBI	CYCGRG	1 cut(s)	733
Bsp1286I	GDGCHC	5 cut(s)	159, 338, 378, 441, 519
Bsp143I	GATC	8 cut(s)	200, 209, 260, 361, 496, 575, 754, 931
BspACI	CCGC	9 cut(s)	191, 251, 481, 661, 681, 693, 724, 831, 914
BspANI	GGCC	6 cut(s)	428, 660, 669, 696, 727, 783
BspCNI	CTCAG	2 cut(s)	313, 350
BspFNI	CGCG	2 cut(s)	358, 724
BspLI	GGNNCC	7 cut(s)	202, 249, 262, 375, 440, 647, 912
BspPI	GGATC	5 cut(s)	195, 208, 255, 268, 583
BspT107I	GGYRCC	2 cut(s)	438, 910
BsrBI	CCGCTC	1 cut(s)	833
BsrI	ACTGG	1 cut(s)	350
BssECI	CCNNGG	8 cut(s)	42, 244, 377, 378, 423, 429, 641, 676
BssMI	GATC	8 cut(s)	200, 209, 260, 361, 496, 575, 754, 931
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	6 cut(s)	12, 44, 245, 379, 425, 729
Bst4CI	ACNGT	1 cut(s)	749
BstAPI	GCANNNNNTGC	1 cut(s)	399
BstC8I	GCNNGC	4 cut(s)	467, 471, 691, 813
BstDEI	CTNAG	2 cut(s)	300, 337
BstDSI	CCRYGG	1 cut(s)	641
BstFNI	CGCG	2 cut(s)	358, 724
BstH2I	RGCGCY	2 cut(s)	466, 711
BstHHI	GCGC	3 cut(s)	358, 465, 710
BstKTI	GATC	8 cut(s)	203, 212, 263, 364, 499, 578, 757, 934
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	8 cut(s)	200, 209, 260, 361, 496, 575, 754, 931
BstMCI	CGRYCG	1 cut(s)	661
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 76, 399, 666, 707, 714
BstNI	CCWGG	6 cut(s)	12, 44, 245, 379, 425, 729
BstNSI	RCATGY	1 cut(s)	30
BstSCI	CCNGG	7 cut(s)	10, 42, 243, 253, 377, 423, 727
BstSLI	GKGCMC	2 cut(s)	441, 519
BstUI	CGCG	2 cut(s)	358, 724
BstV1I	GCAGC	2 cut(s)	175, 673
BstV2I	GAAGAC	2 cut(s)	582, 857
BstX2I	RGATCY	4 cut(s)	200, 209, 260, 575
BstYI	RGATCY	4 cut(s)	200, 209, 260, 575
BstZI	CGGCCG	1 cut(s)	658
BsuRI	GGCC	6 cut(s)	428, 660, 669, 696, 727, 783
BtgI	CCRYGG	1 cut(s)	641
BtgZI	GCGATG	1 cut(s)	51
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	2 cut(s)	24, 357
Cac8I	GCNNGC	4 cut(s)	467, 471, 691, 813
CfoI	GCGC	3 cut(s)	358, 465, 710
Cfr13I	GGNCC	2 cut(s)	248, 645
CsiI	ACCWGGT	1 cut(s)	10
Csp6I	GTAC	3 cut(s)	59, 308, 855
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviAII	CATG	2 cut(s)	27, 616
CviQI	GTAC	3 cut(s)	59, 308, 855
DdeI	CTNAG	2 cut(s)	300, 337
DpnI	GATC	8 cut(s)	202, 211, 262, 363, 498, 577, 756, 933
DpnII	GATC	8 cut(s)	200, 209, 260, 361, 496, 575, 754, 931
EaeI	YGGCCR	2 cut(s)	658, 725
EagI	CGGCCG	1 cut(s)	658
EciI	GGCGGA	2 cut(s)	240, 496
EclXI	CGGCCG	1 cut(s)	658
Eco130I	CCWWGG	1 cut(s)	429
Eco147I	AGGCCT	2 cut(s)	428, 783
Eco24I	GRGCYC	3 cut(s)	159, 338, 378
Eco47I	GGWCC	2 cut(s)	248, 645
Eco52I	CGGCCG	1 cut(s)	658
Eco57I	CTGAAG	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	733
EcoRII	CCWGG	6 cut(s)	10, 42, 243, 377, 423, 727
EcoT14I	CCWWGG	1 cut(s)	429
EcoT38I	GRGCYC	3 cut(s)	159, 338, 378
ErhI	CCWWGG	1 cut(s)	429
Esp3I	CGTCTC	1 cut(s)	303
FaeI	CATG	2 cut(s)	30, 619
FaqI	GGGAC	2 cut(s)	25, 631
FatI	CATG	2 cut(s)	26, 615
FauNDI	CATATG	1 cut(s)	501
FbaI	TGATCA	3 cut(s)	361, 496, 754
Fnu4HI	GCNGC	6 cut(s)	189, 661, 687, 694, 725, 914
FriOI	GRGCYC	3 cut(s)	159, 338, 378
Fsp4HI	GCNGC	6 cut(s)	189, 661, 687, 694, 725, 914
FspBI	CTAG	3 cut(s)	170, 269, 858
GlaI	GCGC	3 cut(s)	357, 464, 709
GluI	GCNGC	6 cut(s)	189, 661, 687, 694, 725, 914
GsuI	CTGGAG	2 cut(s)	723, 770
HaeII	RGCGCY	2 cut(s)	466, 711
HaeIII	GGCC	6 cut(s)	428, 660, 669, 696, 727, 783
HapII	CCGG	1 cut(s)	254
HhaI	GCGC	3 cut(s)	358, 465, 710
Hin1II	CATG	2 cut(s)	30, 619
Hin6I	GCGC	3 cut(s)	356, 463, 708
HinP1I	GCGC	3 cut(s)	356, 463, 708
HinfI	GANTC	5 cut(s)	38, 484, 611, 619, 840
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	2 cut(s)	107, 113
Hpy188I	TCNGA	5 cut(s)	55, 340, 366, 605, 941
Hpy188III	TCNNGA	3 cut(s)	269, 415, 787
Hpy99I	CGWCG	2 cut(s)	295, 298
HpyAV	CCTTC	7 cut(s)	81, 83, 121, 169, 175, 246, 639
HpyCH4III	ACNGT	1 cut(s)	749
HpyCH4V	TGCA	3 cut(s)	17, 393, 778
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 76, 399, 666, 707, 714
HpyF3I	CTNAG	2 cut(s)	300, 337
Hsp92II	CATG	2 cut(s)	30, 619
HspAI	GCGC	3 cut(s)	356, 463, 708
Ksp22I	TGATCA	3 cut(s)	361, 496, 754
Kzo9I	GATC	8 cut(s)	200, 209, 260, 361, 496, 575, 754, 931
LmnI	GCTCC	3 cut(s)	373, 460, 838
Lsp1109I	GCAGC	2 cut(s)	175, 673
MabI	ACCWGGT	1 cut(s)	10
MaeI	CTAG	3 cut(s)	170, 269, 858
MalI	GATC	8 cut(s)	202, 211, 262, 363, 498, 577, 756, 933
MbiI	CCGCTC	1 cut(s)	833
MboI	GATC	8 cut(s)	200, 209, 260, 361, 496, 575, 754, 931
MboII	GAAGA	6 cut(s)	16, 66, 133, 582, 857, 926
MflI	RGATCY	4 cut(s)	200, 209, 260, 575
MhlI	GDGCHC	5 cut(s)	159, 338, 378, 441, 519
MluCI	AATT	2 cut(s)	138, 803
MlyI	GAGTC	3 cut(s)	47, 493, 605
MmeI	TCCRAC	2 cut(s)	264, 964
MseI	TTAA	1 cut(s)	146
MslI	CAYNNNNRTG	1 cut(s)	504
MspA1I	CMGCKG	2 cut(s)	469, 693
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	7 cut(s)	12, 44, 245, 255, 379, 425, 729
MvaI	CCWGG	6 cut(s)	12, 44, 245, 379, 425, 729
MvnI	CGCG	2 cut(s)	358, 724
MwoI	GCNNNNNNNGC	6 cut(s)	23, 76, 399, 666, 707, 714
NciI	CCSGG	1 cut(s)	255
NdeI	CATATG	1 cut(s)	501
NdeII	GATC	8 cut(s)	200, 209, 260, 361, 496, 575, 754, 931
NlaIII	CATG	2 cut(s)	30, 619
NlaIV	GGNNCC	7 cut(s)	202, 249, 262, 375, 440, 647, 912
NmeAIII	GCCGAG	1 cut(s)	657
NspI	RCATGY	1 cut(s)	30
PaeR7I	CTCGAG	1 cut(s)	733
PasI	CCCWGGG	1 cut(s)	378
PceI	AGGCCT	2 cut(s)	428, 783
PfeI	GAWTC	2 cut(s)	619, 840
PflMI	CCANNNNNTGG	2 cut(s)	430, 923
PkrI	GCNGC	6 cut(s)	190, 662, 688, 695, 726, 915
PleI	GAGTC	3 cut(s)	46, 492, 605
PpsI	GAGTC	3 cut(s)	46, 492, 605
Psp6I	CCWGG	6 cut(s)	10, 42, 243, 377, 423, 727
PspGI	CCWGG	6 cut(s)	10, 42, 243, 377, 423, 727
PspN4I	GGNNCC	7 cut(s)	202, 249, 262, 375, 440, 647, 912
PspPI	GGNCC	2 cut(s)	248, 645
PspXI	VCTCGAGB	1 cut(s)	733
PsuI	RGATCY	4 cut(s)	200, 209, 260, 575
PvuII	CAGCTG	1 cut(s)	469
RsaI	GTAC	3 cut(s)	60, 309, 856
RsaNI	GTAC	3 cut(s)	59, 308, 855
RseI	CAYNNNNRTG	1 cut(s)	504
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	6 cut(s)	189, 661, 687, 694, 725, 914
Sau3AI	GATC	8 cut(s)	200, 209, 260, 361, 496, 575, 754, 931
Sau96I	GGNCC	2 cut(s)	248, 645
ScaI	AGTACT	1 cut(s)	856
SchI	GAGTC	3 cut(s)	47, 493, 605
ScrFI	CCNGG	7 cut(s)	12, 44, 245, 255, 379, 425, 729
SduI	GDGCHC	5 cut(s)	159, 338, 378, 441, 519
SexAI	ACCWGGT	1 cut(s)	10
SfiI	GGCCNNNNNGGCC	1 cut(s)	666
Sfr274I	CTCGAG	1 cut(s)	733
SinI	GGWCC	2 cut(s)	248, 645
SlaI	CTCGAG	1 cut(s)	733
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	733
SmoI	CTYRAG	1 cut(s)	733
SpeI	ACTAGT	1 cut(s)	857
Sse9I	AATT	2 cut(s)	138, 803
SseBI	AGGCCT	2 cut(s)	428, 783
SsiI	CCGC	9 cut(s)	191, 251, 481, 661, 681, 693, 724, 831, 914
SspMI	CTAG	3 cut(s)	170, 269, 858
StuI	AGGCCT	2 cut(s)	428, 783
StyD4I	CCNGG	7 cut(s)	10, 42, 243, 253, 377, 423, 727
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	749
TaqI	TCGA	3 cut(s)	416, 734, 843
TasI	AATT	2 cut(s)	138, 803
TatI	WGTACW	1 cut(s)	854
TauI	GCSGC	4 cut(s)	663, 696, 727, 916
TfiI	GAWTC	2 cut(s)	619, 840
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	2 cut(s)	24, 357
TseI	GCWGC	2 cut(s)	188, 686
TspDTI	ATGAA	5 cut(s)	17, 134, 140, 611, 816
TspRI	CASTG	2 cut(s)	24, 357
Van91I	CCANNNNNTGG	2 cut(s)	430, 923
VpaK11BI	GGWCC	2 cut(s)	248, 645
XbaI	TCTAGA	1 cut(s)	268
XceI	RCATGY	1 cut(s)	30
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XhoI	CTCGAG	1 cut(s)	733
XspI	CTAG	3 cut(s)	170, 269, 858
ZrmI	AGTACT	1 cut(s)	856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.