Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005913

Physical Location & Seq

Genomic Coordinates Reverse (-)

36801967 .. 36802977

Gene Structure 1011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG167200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAGATACCAGTACTAGAAGTATGCGCTAATTCTTCCGAGGCCTCGAGCATCATCTCAGCCGCCTCGGACAAGAAGAATACTATGAAGATGAAGGAGATCAACATCGCCGGCGAATCCCAACAACAACAACAAAAGCCAGAGGTGGTGGCGGAGGAGGCAGAAGCCAATGTTGAACTTGCACTTTTCAAGGCTAATCCGCCGGAGGAGGAGGCCTCGGAGGAGTTAAATGGCGTGCGTGGTCAACAGAAGAAAGAAAAAGAAGATACTAGGGTTTTCAAGTGCAACTTCTGCAACAGAAACTTCTCTACTTCCCAAGCCTTGGGAGGCCACCAAAACGCTCACAAACCGGAACGCCAGCTTGCAAAACGGCGTAGCCAAGGATTGGATGTGGGTGGTGGATTTGGATTAGGGCAGTCATACTATCCTTACAATTTCAGTCCATATTCTTCATCTACTCTTTCTCCACACTACTCACTTTATGGATCTAGGTCGACGTCTCTTGGTGTTAGGCTAGATTCCATGATTCATAAGCCTACTTATACCCCGTGGTACGACCGCCTAGGTGGCGGTGCGGGGTGGTCGAGGCCAGCTTCCTCAAGCCTCCTGCAGAACCACCCTATTAATGATCATAGGCTCAGCTTCCAGGGCGCTCAGAATAATATCAACACCAACGAATTAGGGCTTGGTGTACGAACATTTAATGCTTCATCAAGATTGGAGGAGAGTAGTACTAGTGCTCGTGCTGTTCGCAACTTCGGTGGTACTTGGAATCTTAACGCAATCAACAACAACAACAACAAAAAGCCGCCACTGCCACCATTCAGTGGTAGTACTGATCTTCTGTCTCGAGTAGAGCGGCCCCGAAAGAATGACCAGGATGGTGACGATGACATCGATTTGACGCTCAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009787 GO:0009788 GO:0009791 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

305

Amino Acids

33.61

Weight (kDa)

7.02

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	92 - 117	5.7e-06	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005913)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12011 FvH4_7g04251
malus_domestica	MD07G1042100.v1.1
prunus_persica	Prupe.2G048100_v2.0.a1 Prupe.2G048400_v2.0.a1
pyrus_communis	pycom02g23410
rosa_chinensis	RchiOBHm_Chr1g0328791
rosa_laevigata	RLG00000008539 RLG00000029918
rosa_multiflora	Rmu_co8270465.1_g000001 Rmu_sc0000652.1_g000003 Rmu_sc0004241.1_g000001 Rmu_sc0013419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321370 Rroxscaffold_5G00354150
rosa_rugosa	Rorug01G0075900 Rorug04G0095500
rosa_samantha	Rh1AG094600 Rh1BG075500 Rh1CG091900 Rh1DG097900 Rh4AG157200 Rh4BG156700 Rh4CG167200 Rh4DG150900
rosa_wichuraiana	Rw1G007380 Rw4G012850 Rw4G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	500
AccB7I	CCANNNNNTGG	3 cut(s)	322, 385, 827
AccBSI	CCGCTC	1 cut(s)	859
AccI	GTMKAC	1 cut(s)	494
AciI	CCGC	8 cut(s)	63, 152, 200, 559, 570, 575, 809, 859
AclWI	GGATC	1 cut(s)	493
AcyI	GRCGYC	1 cut(s)	497
AfaI	GTAC	6 cut(s)	15, 554, 693, 733, 766, 835
AfiI	CCNNNNNNNGG	3 cut(s)	322, 385, 827
AgsI	TTSAA	3 cut(s)	176, 190, 280
AhlI	ACTAGT	1 cut(s)	734
AjnI	CCWGG	2 cut(s)	645, 876
AjuI	GAANNNNNNNTTGG	2 cut(s)	669, 701
AluBI	AGCT	4 cut(s)	361, 593, 642, 913
AluI	AGCT	4 cut(s)	361, 593, 642, 913
Alw21I	GWGCWC	1 cut(s)	742
Alw26I	GTCTC	2 cut(s)	504, 852
AlwI	GGATC	1 cut(s)	493
Ama87I	CYCGRG	2 cut(s)	46, 849
AoxI	GGCC	5 cut(s)	42, 213, 328, 587, 860
AseI	ATTAAT	1 cut(s)	624
AspA2I	CCTAGG	1 cut(s)	562
AspLEI	GCGC	2 cut(s)	29, 653
AspS9I	GGNCC	1 cut(s)	861
AsuHPI	GGTGA	1 cut(s)	896
AvaI	CYCGRG	2 cut(s)	46, 849
AvrII	CCTAGG	1 cut(s)	562
BaeI	ACNNNNGTAYC	2 cut(s)	258, 291
BauI	CACGAG	1 cut(s)	741
Bbv12I	GWGCWC	1 cut(s)	742
BccI	CCATC	1 cut(s)	875
BceAI	ACGGC	1 cut(s)	386
BciT130I	CCWGG	2 cut(s)	647, 878
BclI	TGATCA	1 cut(s)	628
BcoDI	GTCTC	2 cut(s)	504, 852
BcuI	ACTAGT	1 cut(s)	734
BfaI	CTAG	6 cut(s)	17, 270, 489, 515, 563, 735
BfmI	CTRYAG	1 cut(s)	608
BfoI	RGCGCY	1 cut(s)	654
BglI	GCCNNNNNGGC	1 cut(s)	567
BisI	GCNGC	3 cut(s)	63, 809, 860
BlnI	CCTAGG	1 cut(s)	562
BlpI	GCTNAGC	1 cut(s)	638
BlsI	GCNGC	3 cut(s)	64, 810, 861
BmcAI	AGTACT	3 cut(s)	15, 733, 835
Bme1390I	CCNGG	2 cut(s)	647, 878
BmeT110I	CYCGRG	2 cut(s)	46, 849
BmgT120I	GGNCC	1 cut(s)	861
BmiI	GGNNCC	1 cut(s)	863
BmrFI	CCNGG	2 cut(s)	647, 878
BmsI	GCATC	1 cut(s)	60
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
Bpu1102I	GCTNAGC	1 cut(s)	638
BpuEI	CTTGAG	2 cut(s)	583, 893
Bsa29I	ATCGAT	1 cut(s)	897
BsaBI	GATNNNNATC	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	497
BsaJI	CCNNGG	8 cut(s)	39, 66, 216, 321, 379, 548, 562, 646
BsaWI	WCCGGW	1 cut(s)	349
BsaXI	ACNNNNNCTCC	2 cut(s)	448, 478
Bsc4I	CCNNNNNNNGG	3 cut(s)	322, 385, 827
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	11
Bse8I	GATNNNNATC	1 cut(s)	104
BseBI	CCWGG	2 cut(s)	647, 878
BseCI	ATCGAT	1 cut(s)	897
BseDI	CCNNGG	8 cut(s)	39, 66, 216, 321, 379, 548, 562, 646
BseGI	GGATG	2 cut(s)	394, 886
BseJI	GATNNNNATC	1 cut(s)	104
BseLI	CCNNNNNNNGG	3 cut(s)	322, 385, 827
BseMII	CTCAG	3 cut(s)	72, 652, 668
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	5 cut(s)	170, 221, 224, 236, 737
Bsh1285I	CGRYCG	1 cut(s)	559
BshFI	GGCC	5 cut(s)	44, 215, 330, 589, 862
BshVI	ATCGAT	1 cut(s)	897
BsiEI	CGRYCG	1 cut(s)	559
BsiHKAI	GWGCWC	1 cut(s)	742
BsiHKCI	CYCGRG	2 cut(s)	46, 849
BsiSI	CCGG	3 cut(s)	111, 203, 350
BslI	CCNNNNNNNGG	3 cut(s)	322, 385, 827
BsmAI	GTCTC	2 cut(s)	504, 852
BsmBI	CGTCTC	1 cut(s)	504
BsnI	GGCC	5 cut(s)	44, 215, 330, 589, 862
BsoBI	CYCGRG	2 cut(s)	46, 849
Bsp1286I	GDGCHC	1 cut(s)	742
Bsp143I	GATC	4 cut(s)	99, 485, 628, 838
Bsp1720I	GCTNAGC	1 cut(s)	638
BspACI	CCGC	8 cut(s)	63, 152, 200, 559, 570, 575, 809, 859
BspANI	GGCC	5 cut(s)	44, 215, 330, 589, 862
BspCNI	CTCAG	3 cut(s)	71, 651, 667
BspDI	ATCGAT	1 cut(s)	897
BspLI	GGNNCC	1 cut(s)	863
BspMAI	CTGCAG	1 cut(s)	612
BspPI	GGATC	1 cut(s)	493
BsrBI	CCGCTC	1 cut(s)	859
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	8 cut(s)	39, 66, 216, 321, 379, 548, 562, 646
BssMI	GATC	4 cut(s)	99, 485, 628, 838
BssNI	GRCGYC	1 cut(s)	497
BssSI	CACGAG	1 cut(s)	741
BssT1I	CCWWGG	3 cut(s)	321, 379, 562
Bst2BI	CACGAG	1 cut(s)	741
Bst2UI	CCWGG	2 cut(s)	647, 878
BstACI	GRCGYC	1 cut(s)	497
BstAPI	GCANNNNNTGC	1 cut(s)	291
BstC8I	GCNNGC	5 cut(s)	112, 236, 359, 363, 591
BstDEI	CTNAG	3 cut(s)	58, 638, 654
BstDSI	CCRYGG	1 cut(s)	548
BstF5I	GGATG	2 cut(s)	394, 886
BstH2I	RGCGCY	1 cut(s)	654
BstHHI	GCGC	2 cut(s)	29, 653
BstKTI	GATC	4 cut(s)	102, 488, 631, 841
BstMAI	GTCTC	2 cut(s)	504, 852
BstMBI	GATC	4 cut(s)	99, 485, 628, 838
BstMCI	CGRYCG	1 cut(s)	559
BstMWI	GCNNNNNNNGC	5 cut(s)	158, 291, 567, 648, 814
BstNI	CCWGG	2 cut(s)	647, 878
BstSCI	CCNGG	2 cut(s)	645, 876
BstSFI	CTRYAG	1 cut(s)	608
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
Bsu15I	ATCGAT	1 cut(s)	897
BsuRI	GGCC	5 cut(s)	44, 215, 330, 589, 862
BsuTUI	ATCGAT	1 cut(s)	897
BtgI	CCRYGG	1 cut(s)	548
BtgZI	GCGATG	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	394, 886
BtsI	GCAGTG	1 cut(s)	812
BtsIMutI	CAGTG	2 cut(s)	812, 832
Cac8I	GCNNGC	5 cut(s)	112, 236, 359, 363, 591
CfoI	GCGC	2 cut(s)	29, 653
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	861
ClaI	ATCGAT	1 cut(s)	897
CseI	GACGC	1 cut(s)	913
Csp6I	GTAC	6 cut(s)	14, 553, 692, 732, 765, 834
CspCI	CAANNNNNGTGG	2 cut(s)	742, 777
CviAII	CATG	1 cut(s)	523
CviQI	GTAC	6 cut(s)	14, 553, 692, 732, 765, 834
DdeI	CTNAG	3 cut(s)	58, 638, 654
DpnI	GATC	4 cut(s)	101, 487, 630, 840
DpnII	GATC	4 cut(s)	99, 485, 628, 838
EciI	GGCGGA	2 cut(s)	167, 189
Eco130I	CCWWGG	3 cut(s)	321, 379, 562
Eco147I	AGGCCT	2 cut(s)	44, 215
Eco88I	CYCGRG	2 cut(s)	46, 849
EcoRII	CCWGG	2 cut(s)	645, 876
EcoT14I	CCWWGG	3 cut(s)	321, 379, 562
ErhI	CCWWGG	3 cut(s)	321, 379, 562
Esp3I	CGTCTC	1 cut(s)	504
FaeI	CATG	1 cut(s)	526
FaiI	YATR	9 cut(s)	25, 86, 421, 445, 483, 524, 531, 543, 633
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FatI	CATG	1 cut(s)	522
FauI	CCCGC	1 cut(s)	568
FbaI	TGATCA	1 cut(s)	628
FblI	GTMKAC	1 cut(s)	494
Fnu4HI	GCNGC	3 cut(s)	63, 809, 860
FokI	GGATG	2 cut(s)	401, 893
Fsp4HI	GCNGC	3 cut(s)	63, 809, 860
FspBI	CTAG	6 cut(s)	17, 270, 489, 515, 563, 735
GlaI	GCGC	2 cut(s)	28, 652
GluI	GCNGC	3 cut(s)	63, 809, 860
HaeII	RGCGCY	1 cut(s)	654
HaeIII	GGCC	5 cut(s)	44, 215, 330, 589, 862
HapII	CCGG	3 cut(s)	111, 203, 350
HgaI	GACGC	1 cut(s)	913
HhaI	GCGC	2 cut(s)	29, 653
Hin1I	GRCGYC	1 cut(s)	497
Hin1II	CATG	1 cut(s)	526
Hin6I	GCGC	2 cut(s)	27, 651
HinP1I	GCGC	2 cut(s)	27, 651
HincII	GTYRAC	2 cut(s)	245, 495
HindII	GTYRAC	2 cut(s)	245, 495
HindIII	AAGCTT	1 cut(s)	911
HinfI	GANTC	4 cut(s)	116, 518, 526, 772
HpaII	CCGG	3 cut(s)	111, 203, 350
HphI	GGTGA	1 cut(s)	896
Hpy166II	GTNNAC	3 cut(s)	245, 495, 692
Hpy188I	TCNGA	4 cut(s)	40, 70, 220, 657
Hpy188III	TCNNGA	2 cut(s)	714, 849
Hpy8I	GTNNAC	3 cut(s)	245, 495, 692
Hpy99I	CGWCG	1 cut(s)	499
HpyAV	CCTTC	1 cut(s)	88
HpyCH4IV	ACGT	1 cut(s)	497
HpyCH4V	TGCA	5 cut(s)	182, 285, 294, 365, 610
HpyF10VI	GCNNNNNNNGC	5 cut(s)	158, 291, 567, 648, 814
HpyF3I	CTNAG	3 cut(s)	58, 638, 654
HpySE526I	ACGT	1 cut(s)	497
Hsp92I	GRCGYC	1 cut(s)	497
Hsp92II	CATG	1 cut(s)	526
HspAI	GCGC	2 cut(s)	27, 651
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	4 cut(s)	99, 485, 628, 838
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	6 cut(s)	17, 270, 489, 515, 563, 735
MaeII	ACGT	1 cut(s)	497
MaeIII	GTNAC	1 cut(s)	884
MalI	GATC	4 cut(s)	101, 487, 630, 840
MbiI	CCGCTC	1 cut(s)	859
MboI	GATC	4 cut(s)	99, 485, 628, 838
MboII	GAAGA	7 cut(s)	27, 88, 100, 262, 275, 441, 833
MflI	RGATCY	1 cut(s)	485
MhlI	GDGCHC	1 cut(s)	742
MluCI	AATT	3 cut(s)	31, 433, 677
MreI	CGCCGGCG	1 cut(s)	110
MroNI	GCCGGC	1 cut(s)	110
MseI	TTAA	5 cut(s)	227, 624, 702, 777, 916
MspI	CCGG	3 cut(s)	111, 203, 350
MspR9I	CCNGG	2 cut(s)	647, 878
MvaI	CCWGG	2 cut(s)	647, 878
MwoI	GCNNNNNNNGC	5 cut(s)	158, 291, 567, 648, 814
NaeI	GCCGGC	1 cut(s)	112
NdeII	GATC	4 cut(s)	99, 485, 628, 838
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	1 cut(s)	526
NlaIV	GGNNCC	1 cut(s)	863
NmuCI	GTSAC	1 cut(s)	884
PaeR7I	CTCGAG	2 cut(s)	46, 849
PceI	AGGCCT	2 cut(s)	44, 215
PcsI	WCGNNNNNNNCGW	1 cut(s)	894
PdiI	GCCGGC	1 cut(s)	112
PfeI	GAWTC	4 cut(s)	116, 518, 526, 772
PflMI	CCANNNNNTGG	3 cut(s)	322, 385, 827
PkrI	GCNGC	3 cut(s)	64, 810, 861
PshBI	ATTAAT	1 cut(s)	624
Psp6I	CCWGG	2 cut(s)	645, 876
PspGI	CCWGG	2 cut(s)	645, 876
PspN4I	GGNNCC	1 cut(s)	863
PspPI	GGNCC	1 cut(s)	861
PspXI	VCTCGAGB	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	612
PsuI	RGATCY	1 cut(s)	485
RsaI	GTAC	6 cut(s)	15, 554, 693, 733, 766, 835
RsaNI	GTAC	6 cut(s)	14, 553, 692, 732, 765, 834
SalI	GTCGAC	1 cut(s)	493
SaqAI	TTAA	5 cut(s)	227, 624, 702, 777, 916
SatI	GCNGC	3 cut(s)	63, 809, 860
Sau3AI	GATC	4 cut(s)	99, 485, 628, 838
Sau96I	GGNCC	1 cut(s)	861
ScaI	AGTACT	3 cut(s)	15, 733, 835
ScrFI	CCNGG	2 cut(s)	647, 878
SduI	GDGCHC	1 cut(s)	742
SetI	ASST	8 cut(s)	147, 363, 494, 500, 568, 595, 644, 915
SfaNI	GCATC	1 cut(s)	60
SfcI	CTRYAG	1 cut(s)	608
Sfr274I	CTCGAG	2 cut(s)	46, 849
SgrAI	CRCCGGYG	1 cut(s)	110
SlaI	CTCGAG	2 cut(s)	46, 849
SmlI	CTYRAG	4 cut(s)	46, 598, 849, 908
SmoI	CTYRAG	4 cut(s)	46, 598, 849, 908
SpeI	ACTAGT	1 cut(s)	734
Sse9I	AATT	3 cut(s)	31, 433, 677
SseBI	AGGCCT	2 cut(s)	44, 215
SsiI	CCGC	8 cut(s)	63, 152, 200, 559, 570, 575, 809, 859
SspMI	CTAG	6 cut(s)	17, 270, 489, 515, 563, 735
StuI	AGGCCT	2 cut(s)	44, 215
StyD4I	CCNGG	2 cut(s)	645, 876
StyI	CCWWGG	3 cut(s)	321, 379, 562
TaiI	ACGT	1 cut(s)	500
TaqI	TCGA	5 cut(s)	47, 494, 584, 850, 897
TasI	AATT	3 cut(s)	31, 433, 677
TatI	WGTACW	3 cut(s)	13, 731, 833
TauI	GCSGC	3 cut(s)	65, 811, 862
TfiI	GAWTC	4 cut(s)	116, 518, 526, 772
Tru1I	TTAA	5 cut(s)	227, 624, 702, 777, 916
Tru9I	TTAA	5 cut(s)	227, 624, 702, 777, 916
TscAI	CASTG	2 cut(s)	819, 832
TseFI	GTSAC	1 cut(s)	884
Tsp45I	GTSAC	1 cut(s)	884
TspDTI	ATGAA	5 cut(s)	101, 107, 441, 518, 699
TspRI	CASTG	2 cut(s)	819, 832
Van91I	CCANNNNNTGG	3 cut(s)	322, 385, 827
VspI	ATTAAT	1 cut(s)	624
XhoI	CTCGAG	2 cut(s)	46, 849
XmaJI	CCTAGG	1 cut(s)	562
XmiI	GTMKAC	1 cut(s)	494
XspI	CTAG	6 cut(s)	17, 270, 489, 515, 563, 735
ZraI	GACGTC	1 cut(s)	498
ZrmI	AGTACT	3 cut(s)	15, 733, 835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.